Wall clock time and date at job start Tue Mar 31 2020 20:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21274 * 120.00113 * 2 1 4 4 N 1.34780 * 119.99552 * 180.02562 * 2 1 3 5 5 C 1.46920 * 120.63674 * 5.47277 * 4 2 1 6 6 C 1.53192 * 108.77830 * 233.63544 * 5 4 2 7 7 C 1.53041 * 109.31098 * 305.36287 * 6 5 4 8 8 C 1.53047 * 109.53789 * 61.36502 * 7 6 5 9 9 C 1.46935 * 120.62301 * 185.49936 * 4 2 1 10 10 H 1.08999 * 109.69961 * 246.22200 * 9 4 2 11 11 C 1.52994 * 109.58797 * 6.58037 * 9 4 2 12 12 C 1.50701 * 109.47101 * 282.76080 * 11 9 4 13 13 O 1.21281 * 119.99941 * 359.97438 * 12 11 9 14 14 N 1.34772 * 120.00020 * 180.02562 * 12 11 9 15 15 C 1.47424 * 125.64889 * 179.97438 * 14 12 11 16 16 C 1.54916 * 104.83076 * 204.15853 * 15 14 12 17 17 H 1.09003 * 111.00210 * 81.06542 * 16 15 14 18 18 C 1.53004 * 111.00478 * 204.91300 * 16 15 14 19 19 C 1.55155 * 101.58205 * 322.98862 * 16 15 14 20 20 H 1.08999 * 110.71809 * 277.14090 * 19 16 15 21 21 N 1.46499 * 110.71897 * 153.86505 * 19 16 15 22 22 C 1.36938 * 120.00117 * 160.02193 * 21 19 16 23 23 H 1.08001 * 119.99731 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00170 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99854 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99847 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47048 * 60.00385 * 26 24 22 28 28 H 1.48503 * 109.47161 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47338 * 300.00046 * 26 24 22 30 30 C 1.47022 * 125.64987 * 0.02562 * 14 12 11 31 31 H 1.09004 * 109.47287 * 185.53495 * 1 2 3 32 32 H 1.09006 * 109.46980 * 305.52902 * 1 2 3 33 33 H 1.08991 * 109.47527 * 65.53211 * 1 2 3 34 34 H 1.09000 * 109.58485 * 113.84474 * 5 4 2 35 35 H 1.09007 * 109.70125 * 353.49415 * 5 4 2 36 36 H 1.08996 * 109.49701 * 185.41526 * 6 5 4 37 37 H 1.08999 * 109.49497 * 65.31400 * 6 5 4 38 38 H 1.09005 * 109.45984 * 301.34552 * 7 6 5 39 39 H 1.08992 * 109.46078 * 181.38313 * 7 6 5 40 40 H 1.08996 * 109.49675 * 178.68468 * 8 7 6 41 41 H 1.08995 * 109.52124 * 58.60091 * 8 7 6 42 42 H 1.09002 * 109.47153 * 162.76335 * 11 9 4 43 43 H 1.09002 * 109.47320 * 42.76149 * 11 9 4 44 44 H 1.08997 * 110.36641 * 322.99530 * 15 14 12 45 45 H 1.08996 * 110.36817 * 85.32322 * 15 14 12 46 46 H 1.08992 * 109.47301 * 172.19344 * 18 16 15 47 47 H 1.09002 * 109.47094 * 292.20276 * 18 16 15 48 48 H 1.09007 * 109.46537 * 52.19493 * 18 16 15 49 49 H 0.97002 * 120.00267 * 340.02866 * 21 19 16 50 50 H 0.96995 * 119.99901 * 180.02562 * 25 24 22 51 51 H 1.08999 * 109.88072 * 59.48858 * 30 14 12 52 52 H 1.09005 * 110.01198 * 298.40125 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4653 -2.4447 -0.1217 6 6 1.8764 -3.3525 1.0419 7 6 3.4008 -3.4858 1.0657 8 6 4.0317 -2.1082 1.2815 9 6 3.6450 -1.1863 0.1206 10 1 4.0854 -1.5589 -0.8042 11 6 4.1552 0.2291 0.3979 12 6 4.1437 1.0267 -0.8807 13 8 3.7652 0.5133 -1.9122 14 7 4.5550 2.3101 -0.8781 15 6 4.5961 3.2016 -2.0515 16 6 5.6656 4.2668 -1.7030 17 1 6.6702 3.8873 -1.8898 18 6 5.4194 5.5643 -2.4756 19 6 5.4208 4.4687 -0.1843 20 1 4.6018 5.1678 -0.0154 21 7 6.6423 4.9286 0.4809 22 6 6.5662 5.5509 1.6984 23 1 5.6057 5.7023 2.1683 24 6 7.7237 5.9861 2.3290 25 7 8.8944 5.8011 1.7565 26 14 7.6198 6.8357 3.9893 27 1 6.9967 5.9180 4.9767 28 1 8.9854 7.1995 4.4456 29 1 6.7948 8.0642 3.8660 30 6 5.0381 3.0527 0.2952 31 1 -0.3634 -1.0229 0.0991 32 1 -0.3633 0.5972 0.8364 33 1 -0.3634 0.4256 -0.9353 34 1 1.7259 -2.9213 -1.0667 35 1 0.3901 -2.2686 -0.0855 36 1 1.4271 -4.3370 0.9115 37 1 1.5345 -2.9174 1.9810 38 1 3.7441 -3.8978 0.1167 39 1 3.6945 -4.1509 1.8776 40 1 5.1164 -2.2071 1.3216 41 1 3.6700 -1.6847 2.2184 42 1 5.1727 0.1792 0.7858 43 1 3.5096 0.7107 1.1324 44 1 4.8910 2.6447 -2.9409 45 1 3.6256 3.6740 -2.2032 46 1 6.0963 6.3375 -2.1123 47 1 5.5980 5.3945 -3.5374 48 1 4.3882 5.8852 -2.3274 49 1 7.5051 4.7923 0.0590 50 1 9.7032 6.1049 2.1973 51 1 5.9119 2.5546 0.7152 52 1 4.2510 3.1161 1.0466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082801798.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:15 Heat of formation + Delta-G solvation = -60.691803 kcal Electronic energy + Delta-G solvation = -31260.551783 eV Core-core repulsion = 27259.987871 eV Total energy + Delta-G solvation = -4000.563912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.99368 -40.56923 -38.69183 -38.34512 -35.81181 -34.47981 -33.86835 -33.58604 -32.49385 -30.27666 -29.42476 -29.04244 -27.07343 -25.89703 -25.54570 -23.55326 -22.83604 -21.96282 -21.38442 -20.21260 -19.87001 -19.07708 -18.26082 -17.75990 -17.35402 -17.06575 -16.69500 -16.27277 -16.09924 -15.55630 -15.41967 -15.31893 -14.96628 -14.86474 -14.61951 -14.46375 -14.16582 -14.12890 -13.82322 -13.76415 -13.55970 -13.30010 -13.28024 -13.01925 -12.87335 -12.80836 -12.74616 -12.58401 -12.25844 -12.18067 -12.07410 -12.04634 -11.86994 -11.69457 -11.64354 -11.46078 -11.42256 -10.98809 -10.78260 -10.13907 -9.58504 -9.46583 -9.06410 -7.93992 -5.24216 1.49270 1.51533 1.52305 1.57603 2.05059 2.05473 2.20956 2.57192 3.36784 3.43806 3.51815 3.76461 3.80328 3.82731 3.91801 3.94083 4.02432 4.16244 4.20059 4.25368 4.27015 4.33965 4.38782 4.45558 4.48087 4.57185 4.59823 4.61520 4.67271 4.73487 4.79103 4.88667 4.91721 4.95347 4.98391 5.02534 5.09416 5.11078 5.12178 5.18670 5.22772 5.29057 5.35775 5.45762 5.49718 5.54010 5.63991 6.26418 6.49233 6.71439 7.24948 7.33713 7.36869 8.04375 8.30647 9.28723 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013467 B = 0.003072 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.670501 B = 9113.295877 C =10068.160137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.498 3.502 3 O -0.578 6.578 4 N -0.602 5.602 5 C 0.095 3.905 6 C -0.130 4.130 7 C -0.118 4.118 8 C -0.127 4.127 9 C 0.163 3.837 10 H 0.064 0.936 11 C -0.126 4.126 12 C 0.567 3.433 13 O -0.601 6.601 14 N -0.617 5.617 15 C 0.123 3.877 16 C -0.102 4.102 17 H 0.073 0.927 18 C -0.126 4.126 19 C 0.174 3.826 20 H 0.062 0.938 21 N -0.720 5.720 22 C -0.244 4.244 23 H 0.076 0.924 24 C -0.068 4.068 25 N -0.967 5.967 26 Si 0.971 3.029 27 H -0.278 1.278 28 H -0.296 1.296 29 H -0.278 1.278 30 C 0.098 3.902 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.050 0.950 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.376 0.624 50 H 0.252 0.748 51 H 0.052 0.948 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.957 -20.194 -3.210 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.289 3.711 3 O -0.460 6.460 4 N -0.334 5.334 5 C -0.026 4.026 6 C -0.168 4.168 7 C -0.156 4.156 8 C -0.165 4.165 9 C 0.059 3.941 10 H 0.082 0.918 11 C -0.166 4.166 12 C 0.360 3.640 13 O -0.484 6.484 14 N -0.350 5.350 15 C 0.000 4.000 16 C -0.122 4.122 17 H 0.091 0.909 18 C -0.184 4.184 19 C 0.064 3.936 20 H 0.080 0.920 21 N -0.360 5.360 22 C -0.376 4.376 23 H 0.094 0.906 24 C -0.261 4.261 25 N -0.617 5.617 26 Si 0.800 3.200 27 H -0.204 1.204 28 H -0.223 1.223 29 H -0.204 1.204 30 C -0.028 4.028 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.122 0.878 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.209 0.791 50 H 0.060 0.940 51 H 0.071 0.929 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.938 -19.920 -3.567 27.043 hybrid contribution 0.832 0.744 0.763 1.352 sum -17.106 -19.176 -2.804 25.850 Atomic orbital electron populations 1.22030 0.88959 1.06388 1.05398 1.21529 0.92198 0.82805 0.74527 1.90589 1.69923 1.33618 1.51900 1.48179 1.06536 1.07137 1.71567 1.22190 0.98410 0.82398 0.99574 1.21926 0.95909 1.00673 0.98243 1.21527 0.95759 0.95370 1.02905 1.21980 1.01699 0.95920 0.96888 1.20943 0.80544 0.93586 0.98997 0.91827 1.22007 1.02433 0.95533 0.96582 1.20012 0.73398 0.80284 0.90259 1.90537 1.51207 1.70820 1.35851 1.48352 1.64811 1.11126 1.10748 1.22118 0.98416 0.90559 0.88897 1.22514 0.98370 0.96190 0.95081 0.90898 1.21558 1.01960 0.95040 0.99810 1.21345 0.89682 0.91580 0.91021 0.92036 1.42427 1.03619 1.68976 1.20932 1.19566 0.93114 1.29041 0.95864 0.90608 1.25512 0.95060 1.03103 1.02422 1.69806 0.97490 1.53719 1.40653 0.85260 0.76106 0.78652 0.80018 1.20428 1.22254 1.20414 1.22751 0.97480 0.94781 0.87805 0.86915 0.88322 0.88939 0.91083 0.86621 0.88085 0.91316 0.91591 0.90000 0.90194 0.91496 0.90176 0.87828 0.91361 0.91748 0.93102 0.90835 0.91873 0.79143 0.93962 0.92921 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.08 71.24 0.72 -1.83 16 2 C 0.50 12.67 7.15 87.66 0.63 13.30 16 3 O -0.58 -20.21 10.64 16.53 0.18 -20.03 16 4 N -0.60 -12.88 2.94 -795.02 -2.34 -15.22 16 5 C 0.10 1.13 6.35 86.36 0.55 1.68 16 6 C -0.13 -1.13 6.08 30.67 0.19 -0.94 16 7 C -0.12 -1.38 5.88 30.62 0.18 -1.20 16 8 C -0.13 -2.20 5.31 30.67 0.16 -2.04 16 9 C 0.16 4.01 2.48 44.97 0.11 4.12 16 10 H 0.06 1.79 7.48 -2.39 -0.02 1.77 16 11 C -0.13 -3.92 3.93 29.85 0.12 -3.81 16 12 C 0.57 21.58 5.00 87.66 0.44 22.02 16 13 O -0.60 -25.31 15.20 16.51 0.25 -25.06 16 14 N -0.62 -23.57 3.33 -811.80 -2.70 -26.27 16 15 C 0.12 4.30 6.38 86.86 0.55 4.86 16 16 C -0.10 -3.57 3.25 -9.40 -0.03 -3.60 16 17 H 0.07 2.70 8.00 -2.39 -0.02 2.68 16 18 C -0.13 -3.81 9.31 71.98 0.67 -3.14 16 19 C 0.17 7.16 3.06 46.18 0.14 7.30 16 20 H 0.06 2.57 8.02 -2.39 -0.02 2.55 16 21 N -0.72 -36.05 5.18 -317.34 -1.64 -37.70 16 22 C -0.24 -13.37 9.98 84.03 0.84 -12.53 16 23 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 24 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 25 N -0.97 -58.42 13.06 21.65 0.28 -58.14 16 26 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 29 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 30 C 0.10 3.91 6.24 86.73 0.54 4.45 16 31 H 0.11 0.86 5.17 -2.38 -0.01 0.85 16 32 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.12 0.76 5.07 -2.38 -0.01 0.75 16 36 H 0.10 0.42 8.14 -2.39 -0.02 0.41 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 43 H 0.10 3.47 6.04 -2.39 -0.01 3.45 16 44 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 45 H 0.06 2.18 7.98 -2.39 -0.02 2.17 16 46 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.06 1.77 8.07 -2.38 -0.02 1.75 16 49 H 0.38 20.24 7.71 -92.71 -0.72 19.52 16 50 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 51 H 0.05 2.24 8.03 -2.39 -0.02 2.22 16 52 H 0.05 2.07 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -74.56 398.68 2.51 -72.04 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: 0.19 Total: 37.45 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: 6.27 Total: 25.23 kcal Atomic # 7 Polarization: -130.93 SS G_CDS: -6.40 Total: -137.33 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: 0.43 Total: -45.09 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -74.56 2.51 -72.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082801798.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.352 kcal (2) G-P(sol) polarization free energy of solvation -74.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds