Wall clock time and date at job start Tue Mar 31 2020 20:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47153 * 2 1 4 4 C 1.53003 * 109.47573 * 120.00029 * 2 1 3 5 5 H 1.09002 * 109.46802 * 304.20588 * 4 2 1 6 6 C 1.50698 * 109.46851 * 64.20502 * 4 2 1 7 7 O 1.21284 * 119.99849 * 88.44180 * 6 4 2 8 8 N 1.34775 * 120.00228 * 268.43629 * 6 4 2 9 9 C 1.47017 * 125.65234 * 174.67381 * 8 6 4 10 10 C 1.54324 * 107.40521 * 178.90162 * 9 8 6 11 11 H 1.09000 * 110.71912 * 96.24758 * 10 9 8 12 12 C 1.53004 * 110.72013 * 219.52150 * 10 9 8 13 13 C 1.55400 * 102.82877 * 337.97741 * 10 9 8 14 14 H 1.08999 * 110.88938 * 277.27140 * 13 10 9 15 15 N 1.46491 * 111.04222 * 153.47191 * 13 10 9 16 16 C 1.36936 * 120.00675 * 161.22981 * 15 13 10 17 17 H 1.08000 * 119.99428 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00509 * 180.02562 * 16 15 13 19 19 N 1.31615 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47333 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47229 * 119.99955 * 20 18 16 23 23 H 1.48505 * 109.47149 * 240.00047 * 20 18 16 24 24 C 1.47434 * 125.64848 * 354.72061 * 8 6 4 25 25 N 1.46500 * 109.47351 * 184.20650 * 4 2 1 26 26 C 1.46764 * 124.34823 * 119.72624 * 25 4 2 27 27 C 1.54653 * 105.38138 * 162.85605 * 26 25 4 28 28 C 1.54629 * 101.68798 * 25.76570 * 27 26 25 29 29 C 1.34418 * 124.34755 * 300.02313 * 25 4 2 30 30 O 1.21282 * 124.94335 * 0.43054 * 29 25 4 31 31 H 1.08998 * 109.46515 * 295.15522 * 1 2 3 32 32 H 1.08992 * 109.47548 * 55.15792 * 1 2 3 33 33 H 1.09001 * 109.46817 * 175.16132 * 1 2 3 34 34 H 1.09004 * 109.47365 * 239.99904 * 2 1 3 35 35 H 1.09000 * 109.46773 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46566 * 300.00363 * 3 2 1 37 37 H 1.08997 * 109.46908 * 60.00040 * 3 2 1 38 38 H 1.08997 * 109.88555 * 298.39970 * 9 8 6 39 39 H 1.09007 * 109.88027 * 59.40535 * 9 8 6 40 40 H 1.09001 * 109.46893 * 58.54705 * 12 10 9 41 41 H 1.09003 * 109.46943 * 178.54200 * 12 10 9 42 42 H 1.09001 * 109.47254 * 298.54398 * 12 10 9 43 43 H 0.97009 * 119.99739 * 341.23381 * 15 13 10 44 44 H 0.96999 * 120.00250 * 180.02562 * 19 18 16 45 45 H 1.09003 * 110.35874 * 322.93021 * 24 8 6 46 46 H 1.08997 * 110.36794 * 85.13924 * 24 8 6 47 47 H 1.09009 * 110.24599 * 281.98231 * 26 25 4 48 48 H 1.08993 * 110.24634 * 43.98200 * 26 25 4 49 49 H 1.09001 * 111.19399 * 267.59116 * 27 26 25 50 50 H 1.09000 * 110.85487 * 143.78884 * 27 26 25 51 51 H 1.08998 * 110.48571 * 216.31351 * 28 27 26 52 52 H 1.08997 * 110.60072 * 93.71929 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6165 -0.2527 2.1376 6 6 1.6247 -2.1689 1.1982 7 8 2.3359 -2.9850 0.6512 8 7 0.4629 -2.5569 1.7605 9 6 -0.1150 -3.9068 1.6891 10 6 -1.4294 -3.8897 2.4975 11 1 -2.2842 -3.7299 1.8403 12 6 -1.5919 -5.1858 3.2942 13 6 -1.2337 -2.6765 3.4487 14 1 -0.6518 -2.9601 4.3257 15 7 -2.5230 -2.1016 3.8400 16 6 -2.6070 -1.2972 4.9450 17 1 -1.7226 -1.0869 5.5283 18 6 -3.8288 -0.7528 5.3161 19 7 -4.9065 -1.0094 4.6056 20 14 -3.9434 0.3439 6.8239 21 1 -2.6005 0.4747 7.4442 22 1 -4.4370 1.6860 6.4235 23 1 -4.8839 -0.2576 7.8032 24 6 -0.4396 -1.6975 2.5483 25 7 3.5016 -0.6341 1.3009 26 6 4.2555 -0.0019 2.3900 27 6 5.7031 -0.5265 2.2452 28 6 5.7653 -0.8621 0.7370 29 6 4.3241 -1.1178 0.3542 30 8 3.9635 -1.6774 -0.6596 31 1 -0.3632 0.4368 0.9302 32 1 -0.3634 0.5871 -0.8433 33 1 -0.3633 -1.0240 -0.0867 34 1 1.8934 -0.5139 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 -0.3216 -4.1673 0.6510 39 1 0.5769 -4.6296 2.1217 40 1 -0.7423 -5.3082 3.9661 41 1 -2.5122 -5.1413 3.8766 42 1 -1.6369 -6.0311 2.6076 43 1 -3.3173 -2.2907 3.3163 44 1 -5.7603 -0.6288 4.8646 45 1 0.1363 -1.0023 3.1593 46 1 -1.1154 -1.1523 1.8895 47 1 4.2321 1.0828 2.2848 48 1 3.8433 -0.2970 3.3548 49 1 5.8611 -1.4192 2.8503 50 1 6.4244 0.2493 2.5022 51 1 6.3685 -1.7544 0.5694 52 1 6.1662 -0.0201 0.1729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082956684.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:26 Heat of formation + Delta-G solvation = -54.655937 kcal Electronic energy + Delta-G solvation = -31673.876852 eV Core-core repulsion = 27673.574675 eV Total energy + Delta-G solvation = -4000.302177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.97259 -39.47256 -37.48742 -36.36991 -35.74121 -34.08543 -32.45356 -31.80882 -30.76647 -27.99804 -27.62288 -27.58673 -26.85668 -25.58455 -23.99030 -22.09758 -21.67553 -20.98866 -20.21220 -19.75058 -18.28826 -17.26165 -17.14559 -16.84624 -16.49906 -15.96544 -15.42151 -14.82014 -14.72844 -14.26166 -14.07081 -13.69843 -13.67167 -13.47176 -13.25774 -13.15459 -13.11360 -13.00158 -12.87036 -12.69980 -12.55291 -12.45809 -12.14781 -11.84826 -11.72104 -11.63268 -11.23223 -11.17328 -11.15290 -11.07733 -11.04368 -10.87460 -10.66325 -10.62248 -10.26221 -9.95462 -9.88920 -9.76328 -9.45605 -9.06612 -8.58896 -8.28612 -7.13097 -5.90195 -3.20983 2.52939 2.82026 2.94207 3.34486 3.39168 3.42759 3.43002 4.22701 4.28297 4.45680 4.59025 4.62720 4.72132 4.82122 4.92466 4.98486 5.10143 5.15251 5.22216 5.23664 5.27896 5.32048 5.47622 5.50948 5.56777 5.61278 5.62051 5.64207 5.73637 5.75466 5.80316 5.81636 5.85045 5.91534 5.99376 6.04354 6.17345 6.21139 6.23975 6.28625 6.33503 6.43358 6.47072 6.54274 6.63850 6.84515 7.16239 7.58317 7.81299 8.26585 8.28192 8.47379 9.39422 9.93247 10.28344 11.31719 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012745 B = 0.003462 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.466534 B = 8085.883994 C = 8881.198289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.138 4.138 4 C 0.153 3.847 5 H 0.106 0.894 6 C 0.514 3.486 7 O -0.522 6.522 8 N -0.612 5.612 9 C 0.118 3.882 10 C -0.113 4.113 11 H 0.084 0.916 12 C -0.133 4.133 13 C 0.178 3.822 14 H 0.063 0.937 15 N -0.710 5.710 16 C -0.248 4.248 17 H 0.072 0.928 18 C -0.007 4.007 19 N -0.928 5.928 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.068 3.932 25 N -0.612 5.612 26 C 0.103 3.897 27 C -0.130 4.130 28 C -0.155 4.155 29 C 0.519 3.481 30 O -0.500 6.500 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.089 0.911 51 H 0.098 0.902 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.344 2.579 -5.341 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 C -0.195 4.195 4 C 0.046 3.954 5 H 0.124 0.876 6 C 0.300 3.700 7 O -0.397 6.397 8 N -0.348 5.348 9 C -0.005 4.005 10 C -0.132 4.132 11 H 0.103 0.897 12 C -0.191 4.191 13 C 0.065 3.935 14 H 0.081 0.919 15 N -0.350 5.350 16 C -0.379 4.379 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.575 5.575 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.058 4.058 25 N -0.348 5.348 26 C -0.020 4.020 27 C -0.168 4.168 28 C -0.195 4.195 29 C 0.306 3.694 30 O -0.372 6.372 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.222 0.778 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.117 0.883 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.543 1.945 -6.056 18.660 hybrid contribution -0.506 0.694 0.820 1.187 sum 17.037 2.639 -5.236 18.017 Atomic orbital electron populations 1.22006 0.93578 1.02659 1.02735 1.21374 0.96590 0.96494 0.97536 1.21748 1.00833 0.94932 1.01994 1.20927 0.79936 0.93376 1.01145 0.87578 1.20462 0.80320 0.90539 0.78705 1.90759 1.51764 1.53853 1.43290 1.48537 1.21135 1.12454 1.52632 1.21926 0.94388 0.84204 0.99942 1.22512 0.96252 0.96921 0.97548 0.89750 1.21652 1.02540 0.95448 0.99459 1.21396 0.88848 0.89537 0.93672 0.91868 1.42295 1.03767 1.57325 1.31643 1.19254 0.94170 1.21658 1.02770 0.91013 1.24748 0.95583 1.00869 0.99150 1.69662 0.98983 1.48445 1.40419 0.86149 0.77471 0.80185 0.82519 1.20497 1.21770 1.21782 1.23666 0.92451 0.95347 0.94334 1.48023 1.04514 1.58982 1.23236 1.22144 0.91597 0.97587 0.90705 1.22600 0.95963 1.02452 0.95783 1.22321 0.95611 1.04398 0.97202 1.20728 0.88157 0.77429 0.83112 1.90736 1.80651 1.39853 1.25998 0.91545 0.92001 0.92050 0.89341 0.92855 0.92316 0.92441 0.92175 0.91841 0.92894 0.91437 0.93193 0.77826 0.93366 0.91689 0.90514 0.90865 0.90412 0.90010 0.89268 0.88336 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 7.45 37.16 0.28 -1.68 16 2 C -0.10 -1.31 2.28 -90.61 -0.21 -1.52 16 3 C -0.14 -1.45 8.99 37.16 0.33 -1.12 16 4 C 0.15 2.09 1.97 -69.08 -0.14 1.95 16 5 H 0.11 1.32 6.39 -51.93 -0.33 0.98 16 6 C 0.51 8.69 6.25 -10.99 -0.07 8.62 16 7 O -0.52 -10.74 14.29 -16.87 -0.24 -10.98 16 8 N -0.61 -9.78 2.78 -170.52 -0.47 -10.26 16 9 C 0.12 1.83 6.46 -3.07 -0.02 1.81 16 10 C -0.11 -1.75 3.19 -88.65 -0.28 -2.03 16 11 H 0.08 1.35 8.00 -51.93 -0.42 0.93 16 12 C -0.13 -1.89 9.14 37.16 0.34 -1.55 16 13 C 0.18 3.20 3.14 -65.65 -0.21 2.99 16 14 H 0.06 1.18 8.03 -51.93 -0.42 0.77 16 15 N -0.71 -15.99 5.28 -51.23 -0.27 -16.26 16 16 C -0.25 -6.26 9.98 -15.06 -0.15 -6.41 16 17 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 19 N -0.93 -26.25 13.06 55.49 0.72 -25.53 16 20 Si 0.91 21.00 29.55 -169.99 -5.02 15.98 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.07 1.10 5.15 -2.52 -0.01 1.09 16 25 N -0.61 -7.59 1.89 -166.05 -0.31 -7.90 16 26 C 0.10 0.85 7.31 -3.03 -0.02 0.83 16 27 C -0.13 -0.88 7.19 -25.01 -0.18 -1.06 16 28 C -0.15 -1.41 6.86 -26.74 -0.18 -1.59 16 29 C 0.52 7.35 6.76 -10.86 -0.07 7.28 16 30 O -0.50 -9.40 14.50 -16.87 -0.24 -9.64 16 31 H 0.07 0.85 7.04 -51.93 -0.37 0.48 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.89 6.46 -51.93 -0.34 0.55 16 34 H 0.09 1.41 6.91 -51.93 -0.36 1.06 16 35 H 0.05 0.55 7.38 -51.93 -0.38 0.17 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.98 7.82 -51.93 -0.41 0.58 16 40 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.39 9.38 7.72 -40.82 -0.31 9.06 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.06 1.01 6.87 -51.93 -0.36 0.66 16 46 H 0.08 1.30 5.94 -51.93 -0.31 0.99 16 47 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 52 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -32.82 400.83 -9.52 -42.34 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -9.03 Total: 8.88 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -0.69 Total: 7.33 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.33 Total: -59.94 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.49 Total: -20.62 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.82 -9.52 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082956684.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.314 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds