Wall clock time and date at job start Tue Mar 31 2020 20:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47037 * 2 1 4 4 C 1.52994 * 109.47481 * 120.00117 * 2 1 3 5 5 H 1.09001 * 109.47201 * 301.69099 * 4 2 1 6 6 C 1.50693 * 109.47315 * 181.68621 * 4 2 1 7 7 O 1.21284 * 120.00354 * 278.81429 * 6 4 2 8 8 N 1.34778 * 120.00019 * 98.81545 * 6 4 2 9 9 C 1.47429 * 125.64915 * 175.30980 * 8 6 4 10 10 C 1.54912 * 104.83107 * 204.16788 * 9 8 6 11 11 H 1.08996 * 111.00833 * 81.06386 * 10 9 8 12 12 C 1.53002 * 111.00347 * 204.91623 * 10 9 8 13 13 C 1.55158 * 101.57870 * 322.98791 * 10 9 8 14 14 H 1.08999 * 110.87200 * 277.07152 * 13 10 9 15 15 N 1.46498 * 110.71749 * 153.86716 * 13 10 9 16 16 C 1.36940 * 120.00118 * 160.02440 * 15 13 10 17 17 H 1.08007 * 119.99768 * 359.97438 * 16 15 13 18 18 C 1.38806 * 120.00546 * 180.02562 * 16 15 13 19 19 N 1.31627 * 119.99546 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00179 * 180.27403 * 18 16 15 21 21 H 1.48503 * 109.46706 * 179.72435 * 20 18 16 22 22 H 1.48500 * 109.47363 * 299.72041 * 20 18 16 23 23 H 1.48498 * 109.47090 * 59.72497 * 20 18 16 24 24 C 1.47018 * 125.64905 * 355.35122 * 8 6 4 25 25 N 1.46503 * 109.46929 * 61.68506 * 4 2 1 26 26 C 1.46758 * 124.35391 * 239.72570 * 25 4 2 27 27 C 1.54657 * 105.38701 * 162.85630 * 26 25 4 28 28 C 1.54628 * 101.68266 * 25.76623 * 27 26 25 29 29 C 1.34426 * 124.34904 * 60.02667 * 25 4 2 30 30 O 1.21285 * 124.94186 * 0.42922 * 29 25 4 31 31 H 1.09002 * 109.46659 * 299.99272 * 1 2 3 32 32 H 1.08993 * 109.47560 * 60.00040 * 1 2 3 33 33 H 1.08997 * 109.46734 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46780 * 240.00191 * 2 1 3 35 35 H 1.08995 * 109.46973 * 175.92372 * 3 2 1 36 36 H 1.09001 * 109.47164 * 295.92518 * 3 2 1 37 37 H 1.08998 * 109.46787 * 55.92752 * 3 2 1 38 38 H 1.09006 * 110.36384 * 323.00346 * 9 8 6 39 39 H 1.08993 * 110.36796 * 85.21818 * 9 8 6 40 40 H 1.08994 * 109.47095 * 172.19464 * 12 10 9 41 41 H 1.09003 * 109.46904 * 292.19803 * 12 10 9 42 42 H 1.09003 * 109.47181 * 52.18834 * 12 10 9 43 43 H 0.96998 * 120.00207 * 340.02889 * 15 13 10 44 44 H 0.97004 * 119.99332 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.88057 * 59.48437 * 24 8 6 46 46 H 1.09000 * 110.01220 * 298.39912 * 24 8 6 47 47 H 1.09005 * 110.24864 * 281.98761 * 26 25 4 48 48 H 1.09003 * 110.24629 * 43.98263 * 26 25 4 49 49 H 1.08995 * 111.19402 * 267.59484 * 27 26 25 50 50 H 1.09000 * 110.82274 * 143.77573 * 27 26 25 51 51 H 1.08997 * 110.48693 * 216.31075 * 28 27 26 52 52 H 1.09003 * 110.59854 * 93.72281 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.6523 -0.2252 2.1389 6 6 3.5465 -0.6851 1.2702 7 8 4.1815 -1.4821 0.6125 8 7 4.1881 0.2329 2.0199 9 6 5.6476 0.3195 2.2094 10 6 5.8292 1.0611 3.5573 11 1 5.7072 0.3786 4.3983 12 6 7.1863 1.7650 3.6175 13 6 4.6702 2.0913 3.5045 14 1 4.9588 2.9714 2.9298 15 7 4.2525 2.4713 4.8563 16 6 3.5566 3.6335 5.0567 17 1 3.3161 4.2703 4.2181 18 6 3.1613 3.9939 6.3375 19 7 3.4550 3.2181 7.3595 20 14 2.2054 5.5755 6.6097 21 1 1.8996 5.7264 8.0551 22 1 3.0190 6.7306 6.1527 23 1 0.9376 5.5267 5.8380 24 6 3.5485 1.3132 2.7849 25 7 1.5852 -2.1137 1.2290 26 6 0.7427 -2.7248 2.2636 27 6 0.1705 -4.0098 1.6208 28 6 1.2460 -4.3339 0.5581 29 6 1.8908 -2.9975 0.2633 30 8 2.5830 -2.7584 -0.7035 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1275 1.4434 0.0730 36 1 1.7375 1.9349 -0.9242 37 1 1.6183 1.9769 0.8512 38 1 6.0829 -0.6784 2.2638 39 1 6.1025 0.8873 1.3978 40 1 7.2327 2.3890 4.5099 41 1 7.9809 1.0196 3.6536 42 1 7.3124 2.3876 2.7317 43 1 4.4690 1.8997 5.6095 44 1 3.1784 3.4698 8.2546 45 1 2.8608 0.8914 3.5180 46 1 3.0091 1.9787 2.1110 47 1 1.3415 -2.9726 3.1401 48 1 -0.0673 -2.0490 2.5382 49 1 -0.7954 -3.8200 1.1529 50 1 0.0953 -4.8106 2.3564 51 1 0.7833 -4.7408 -0.3411 52 1 1.9813 -5.0325 0.9572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082956685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:29 Heat of formation + Delta-G solvation = -73.301417 kcal Electronic energy + Delta-G solvation = -31678.082818 eV Core-core repulsion = 27676.972112 eV Total energy + Delta-G solvation = -4001.110706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.07101 -40.69598 -38.89326 -37.48439 -36.72067 -35.82725 -33.88057 -32.72331 -32.48484 -29.18207 -28.96871 -28.40675 -27.91380 -26.74207 -25.78722 -23.14845 -22.80845 -21.94099 -21.41864 -21.18106 -19.40182 -19.04516 -18.53610 -17.87641 -17.43657 -17.00646 -16.61135 -16.54174 -16.04551 -15.58952 -15.33848 -15.12587 -14.73389 -14.67869 -14.59663 -14.39025 -14.28138 -14.00302 -13.90498 -13.68196 -13.58516 -13.46904 -13.32983 -13.05819 -13.00133 -12.78067 -12.76665 -12.36626 -12.26695 -12.21566 -12.17602 -12.07173 -12.02383 -11.98490 -11.73745 -11.63750 -11.41618 -11.08033 -10.88966 -10.54761 -9.68693 -9.59233 -9.02796 -7.90664 -5.20449 1.35467 1.53653 1.54637 1.60495 1.67754 1.84045 2.25775 2.59920 3.25976 3.40580 3.46696 3.63524 3.70591 3.77053 3.80603 3.82856 3.89190 4.05523 4.11632 4.16885 4.22610 4.28919 4.35733 4.45461 4.53950 4.59847 4.62722 4.65962 4.68641 4.70534 4.82106 4.85222 4.86106 4.86986 4.93504 5.07741 5.09174 5.11232 5.11661 5.21768 5.22310 5.25974 5.29560 5.30599 5.46433 5.55691 5.58722 6.20957 6.29302 6.47674 7.07291 7.31315 7.37795 8.08257 8.33216 9.31893 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.003516 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.471044 B = 7960.663714 C = 8777.260446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.153 3.847 5 H 0.117 0.883 6 C 0.509 3.491 7 O -0.559 6.559 8 N -0.611 5.611 9 C 0.118 3.882 10 C -0.101 4.101 11 H 0.072 0.928 12 C -0.128 4.128 13 C 0.173 3.827 14 H 0.068 0.932 15 N -0.720 5.720 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.066 4.066 19 N -0.966 5.966 20 Si 0.966 3.034 21 H -0.301 1.301 22 H -0.281 1.281 23 H -0.275 1.275 24 C 0.079 3.921 25 N -0.613 5.613 26 C 0.091 3.909 27 C -0.112 4.112 28 C -0.150 4.150 29 C 0.499 3.501 30 O -0.554 6.554 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.375 0.625 44 H 0.250 0.750 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.116 0.884 51 H 0.111 0.889 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 -11.031 -11.135 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 C -0.206 4.206 4 C 0.046 3.954 5 H 0.135 0.865 6 C 0.297 3.703 7 O -0.437 6.437 8 N -0.345 5.345 9 C -0.005 4.005 10 C -0.121 4.121 11 H 0.090 0.910 12 C -0.185 4.185 13 C 0.063 3.937 14 H 0.086 0.914 15 N -0.359 5.359 16 C -0.372 4.372 17 H 0.099 0.901 18 C -0.259 4.259 19 N -0.616 5.616 20 Si 0.795 3.205 21 H -0.228 1.228 22 H -0.207 1.207 23 H -0.201 1.201 24 C -0.046 4.046 25 N -0.348 5.348 26 C -0.030 4.030 27 C -0.149 4.149 28 C -0.190 4.190 29 C 0.288 3.712 30 O -0.431 6.431 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.134 0.866 51 H 0.129 0.871 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.973 -11.152 -12.046 17.835 hybrid contribution 0.055 0.706 0.794 1.064 sum -6.917 -10.446 -11.252 16.840 Atomic orbital electron populations 1.21710 0.91770 1.02269 1.03120 1.21313 0.98399 0.96054 0.95779 1.21971 1.00325 0.94772 1.03581 1.20942 0.89215 0.83369 1.01907 0.86532 1.21119 0.91235 0.79667 0.78268 1.90766 1.69118 1.41210 1.42604 1.48627 1.08240 1.30144 1.47506 1.22242 0.80795 1.00439 0.97031 1.22506 0.96636 0.96966 0.96015 0.90995 1.21566 0.94480 1.00243 1.02257 1.21382 0.91044 0.94812 0.86474 0.91359 1.42441 1.66003 1.24421 1.03018 1.19568 1.26275 0.98431 0.92895 0.90142 1.25447 1.03117 1.01642 0.95662 1.69804 1.53096 1.39950 0.98797 0.85335 0.79012 0.80098 0.76035 1.22768 1.20708 1.20126 1.23201 0.98206 0.88544 0.94680 1.48260 1.52120 1.09305 1.25094 1.22486 0.94211 0.96312 0.89997 1.22636 0.97924 0.96592 0.97788 1.22367 1.00094 0.93670 1.02846 1.21725 0.79459 0.88287 0.81753 1.90713 1.38825 1.82260 1.31311 0.91102 0.91340 0.92461 0.92384 0.94136 0.90641 0.90736 0.91679 0.90731 0.93094 0.91228 0.91597 0.79220 0.94114 0.92129 0.90301 0.91204 0.88235 0.88154 0.86596 0.87069 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.05 71.98 0.65 -1.84 16 2 C -0.10 -2.45 2.39 -10.79 -0.03 -2.47 16 3 C -0.15 -3.57 7.66 71.98 0.55 -3.01 16 4 C 0.15 4.21 1.98 44.24 0.09 4.29 16 5 H 0.12 2.91 6.71 -2.39 -0.02 2.89 16 6 C 0.51 17.62 5.76 87.65 0.50 18.12 16 7 O -0.56 -23.97 14.24 18.79 0.27 -23.70 16 8 N -0.61 -19.58 2.91 -811.79 -2.36 -21.94 16 9 C 0.12 3.57 6.36 86.86 0.55 4.12 16 10 C -0.10 -3.11 3.25 -9.40 -0.03 -3.14 16 11 H 0.07 2.38 8.00 -2.39 -0.02 2.37 16 12 C -0.13 -3.45 9.31 71.98 0.67 -2.78 16 13 C 0.17 6.10 3.06 46.18 0.14 6.24 16 14 H 0.07 2.40 8.02 -2.39 -0.02 2.38 16 15 N -0.72 -32.34 5.18 -317.33 -1.64 -33.98 16 16 C -0.24 -11.97 9.98 84.03 0.84 -11.13 16 17 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 18 C -0.07 -3.49 5.50 84.86 0.47 -3.02 16 19 N -0.97 -55.30 13.06 21.65 0.28 -55.02 16 20 Si 0.97 42.89 29.55 68.60 2.03 44.92 16 21 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.08 2.53 5.48 86.73 0.48 3.00 16 25 N -0.61 -15.21 2.13 -797.86 -1.70 -16.90 16 26 C 0.09 1.42 7.31 86.89 0.64 2.06 16 27 C -0.11 -1.12 7.19 31.71 0.23 -0.89 16 28 C -0.15 -2.54 6.86 30.59 0.21 -2.34 16 29 C 0.50 14.35 7.01 87.90 0.62 14.97 16 30 O -0.55 -21.86 14.24 18.79 0.27 -21.59 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.05 7.65 -2.39 -0.02 1.03 16 34 H 0.06 1.90 6.75 -2.39 -0.02 1.88 16 35 H 0.04 1.13 6.18 -2.39 -0.01 1.11 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.64 6.92 -2.39 -0.02 1.62 16 38 H 0.06 2.05 8.08 -2.38 -0.02 2.03 16 39 H 0.07 2.12 7.99 -2.39 -0.02 2.10 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 43 H 0.38 18.53 7.71 -92.71 -0.72 17.81 16 44 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 45 H 0.06 2.09 7.52 -2.38 -0.02 2.07 16 46 H 0.08 2.34 5.14 -2.39 -0.01 2.32 16 47 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 48 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -73.30 401.22 3.91 -69.39 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: 0.19 Total: 36.65 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 6.57 Total: 22.19 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -5.42 Total: -127.85 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: 0.54 Total: -45.29 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -73.30 3.91 -69.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082956685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.912 kcal (2) G-P(sol) polarization free energy of solvation -73.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds