Wall clock time and date at job start Tue Mar 31 2020 19:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.46923 * 120.63273 * 0.28271 * 4 2 1 6 6 C 1.53192 * 108.77564 * 233.58447 * 5 4 2 7 7 C 1.53043 * 109.31235 * 305.36054 * 6 5 4 8 8 C 1.53036 * 109.53620 * 61.36579 * 7 6 5 9 9 H 1.09003 * 109.49977 * 58.58508 * 8 7 6 10 10 C 1.50703 * 109.50031 * 178.65239 * 8 7 6 11 11 O 1.21281 * 119.99517 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00515 * 179.97438 * 10 8 7 13 13 C 1.46493 * 120.00179 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47341 * 180.02562 * 13 12 10 15 15 H 1.08998 * 110.63750 * 56.68351 * 14 13 12 16 16 C 1.54323 * 110.71828 * 293.54767 * 14 13 12 17 17 N 1.47023 * 107.27211 * 219.43969 * 16 14 13 18 18 C 1.36939 * 125.64815 * 178.97520 * 17 16 14 19 19 H 1.08002 * 119.99989 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99766 * 180.02562 * 18 17 16 21 21 N 1.31615 * 119.99921 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99891 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47269 * 89.99425 * 22 20 18 24 24 H 1.48499 * 109.46706 * 209.99634 * 22 20 18 25 25 H 1.48496 * 109.46975 * 329.99427 * 22 20 18 26 26 C 1.47418 * 108.69995 * 358.94450 * 17 16 14 27 27 C 1.54910 * 104.83692 * 24.12700 * 26 17 16 28 28 H 1.08992 * 111.00590 * 81.06401 * 27 26 17 29 29 C 1.53001 * 111.00483 * 204.91791 * 27 26 17 30 30 C 1.46929 * 120.63092 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 33 33 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 34 34 H 1.09003 * 109.58523 * 353.36859 * 5 4 2 35 35 H 1.08996 * 109.59476 * 113.79560 * 5 4 2 36 36 H 1.08998 * 109.49840 * 65.31182 * 6 5 4 37 37 H 1.09006 * 109.49996 * 185.40914 * 6 5 4 38 38 H 1.08996 * 109.46188 * 181.38449 * 7 6 5 39 39 H 1.09005 * 109.46046 * 301.36136 * 7 6 5 40 40 H 0.97001 * 119.99827 * 0.02562 * 12 10 8 41 41 H 1.08997 * 109.47389 * 300.00282 * 13 12 10 42 42 H 1.08998 * 109.47019 * 60.00219 * 13 12 10 43 43 H 1.09007 * 109.88425 * 338.86050 * 16 14 13 44 44 H 1.09008 * 109.88278 * 99.87068 * 16 14 13 45 45 H 0.97006 * 119.99611 * 180.02562 * 21 20 18 46 46 H 1.09003 * 110.36675 * 142.96903 * 26 17 16 47 47 H 1.08998 * 110.36478 * 265.17582 * 26 17 16 48 48 H 1.09000 * 109.46864 * 172.19461 * 29 27 26 49 49 H 1.08997 * 109.47077 * 292.19561 * 29 27 26 50 50 H 1.09006 * 109.47200 * 52.19461 * 29 27 26 51 51 H 1.09007 * 109.58815 * 246.20444 * 30 4 2 52 52 H 1.08999 * 109.58776 * 6.63087 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4604 -2.4476 0.0058 6 6 1.9639 -3.2967 1.1772 7 6 3.4857 -3.4319 1.0869 8 6 4.1291 -2.0467 1.1827 9 1 3.8415 -1.5761 2.1229 10 6 5.6289 -2.1837 1.1270 11 8 6.1339 -3.2812 1.0206 12 7 6.4088 -1.0866 1.1944 13 6 7.8667 -1.2199 1.1408 14 6 8.5094 0.1653 1.2365 15 1 8.1874 0.6763 2.1438 16 6 8.1772 1.0087 -0.0124 17 7 9.3897 1.7614 -0.3660 18 6 9.5176 2.6147 -1.4294 19 1 8.6816 2.7796 -2.0930 20 6 10.7221 3.2668 -1.6549 21 7 11.7410 3.0653 -0.8465 22 14 10.8964 4.4313 -3.1051 23 1 10.5167 5.8044 -2.6858 24 1 12.3051 4.4290 -3.5751 25 1 10.0062 3.9863 -4.2071 26 6 10.4446 1.4458 0.6142 27 6 10.0563 0.0577 1.1818 28 1 10.3688 -0.7408 0.5090 29 6 10.6416 -0.1462 2.5806 30 6 3.6501 -1.1834 0.0052 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 -0.3633 -0.5138 0.8900 34 1 0.3917 -2.2655 0.1193 35 1 1.6462 -2.9716 -0.9317 36 1 1.6967 -2.8144 2.1174 37 1 1.5075 -4.2856 1.1324 38 1 3.8440 -4.0561 1.9055 39 1 3.7537 -3.8915 0.1355 40 1 6.0049 -0.2088 1.2791 41 1 8.2061 -1.8359 1.9735 42 1 8.1542 -1.6900 0.2004 43 1 7.8932 0.3546 -0.8368 44 1 7.3626 1.6976 0.2115 45 1 12.5825 3.5213 -1.0039 46 1 11.4164 1.3964 0.1230 47 1 10.4594 2.1917 1.4088 48 1 10.2425 -1.0645 3.0112 49 1 11.7271 -0.2182 2.5132 50 1 10.3722 0.6991 3.2140 51 1 4.0106 -1.6066 -0.9324 52 1 4.0268 -0.1668 0.1185 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092796992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:20 Heat of formation + Delta-G solvation = -85.379587 kcal Electronic energy + Delta-G solvation = -30212.181162 eV Core-core repulsion = 26210.546707 eV Total energy + Delta-G solvation = -4001.634455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.61992 -40.61784 -39.63337 -38.09541 -36.11415 -34.73591 -34.13805 -32.64199 -32.57325 -30.88470 -30.20050 -27.89879 -26.81035 -26.09585 -25.22176 -24.21650 -22.54821 -21.58588 -21.39300 -20.59647 -20.02798 -18.92530 -18.40085 -17.74004 -17.31041 -17.07577 -16.81287 -16.49557 -16.21516 -15.94321 -15.61044 -15.25326 -14.97830 -14.92230 -14.68209 -14.36985 -14.21105 -14.14697 -14.02040 -13.60679 -13.53847 -13.41593 -13.22569 -13.02637 -13.00375 -12.77628 -12.70994 -12.51109 -12.48790 -11.99363 -11.97086 -11.90577 -11.86795 -11.66958 -11.63242 -11.44244 -11.29945 -10.99344 -10.77905 -10.71265 -10.13301 -9.73803 -8.90565 -7.79632 -5.24210 1.43749 1.45682 1.45834 1.54505 1.63501 1.96439 2.19893 2.47140 3.29072 3.51299 3.54439 3.64236 3.74238 3.79737 3.84439 3.86631 3.95029 4.04856 4.15965 4.21039 4.35911 4.42365 4.47179 4.51609 4.59469 4.60691 4.66095 4.72171 4.73153 4.74800 4.78992 4.83439 4.91105 4.94447 5.01827 5.07809 5.13624 5.15569 5.19228 5.32917 5.36839 5.37644 5.42392 5.45420 5.47985 5.70292 5.82222 6.29735 6.39599 6.46211 7.09270 7.14173 7.14748 7.76439 8.40070 9.21786 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011952 B = 0.002797 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.129693 B =10009.973606 C =11817.820792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.501 3.499 3 O -0.602 6.602 4 N -0.610 5.610 5 C 0.098 3.902 6 C -0.127 4.127 7 C -0.099 4.099 8 C -0.108 4.108 9 H 0.113 0.887 10 C 0.518 3.482 11 O -0.575 6.575 12 N -0.719 5.719 13 C 0.145 3.855 14 C -0.090 4.090 15 H 0.092 0.908 16 C 0.138 3.862 17 N -0.628 5.628 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.066 4.066 21 N -0.947 5.947 22 Si 0.979 3.021 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.272 1.272 26 C 0.162 3.838 27 C -0.099 4.099 28 H 0.067 0.933 29 C -0.127 4.127 30 C 0.121 3.879 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.409 0.591 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.021 0.979 45 H 0.248 0.752 46 H 0.070 0.930 47 H -0.010 1.010 48 H 0.074 0.926 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.067 0.933 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.952 -15.463 7.366 30.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.292 3.708 3 O -0.483 6.483 4 N -0.343 5.343 5 C -0.023 4.023 6 C -0.165 4.165 7 C -0.137 4.137 8 C -0.131 4.131 9 H 0.131 0.869 10 C 0.304 3.696 11 O -0.454 6.454 12 N -0.370 5.370 13 C 0.021 3.979 14 C -0.109 4.109 15 H 0.110 0.890 16 C 0.013 3.987 17 N -0.354 5.354 18 C -0.371 4.371 19 H 0.094 0.906 20 C -0.258 4.258 21 N -0.597 5.597 22 Si 0.807 3.193 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.197 1.197 26 C 0.037 3.963 27 C -0.120 4.120 28 H 0.085 0.915 29 C -0.184 4.184 30 C -0.004 4.004 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.245 0.755 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.039 0.961 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.008 0.992 48 H 0.093 0.907 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.086 0.914 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.154 -15.568 7.175 29.619 hybrid contribution 0.757 1.504 -0.880 1.900 sum -23.397 -14.064 6.296 28.015 Atomic orbital electron populations 1.21973 0.87736 1.06046 1.06596 1.21787 0.92594 0.82257 0.74161 1.90743 1.72145 1.33128 1.52267 1.48263 1.05782 1.07435 1.72824 1.22165 0.98246 0.82192 0.99693 1.21941 0.93729 1.01876 0.98918 1.21354 0.96012 0.93225 1.03140 1.21753 0.89711 1.00232 1.01354 0.86935 1.20909 0.89928 0.83647 0.75078 1.90682 1.76554 1.27276 1.50908 1.46121 1.07078 1.10053 1.73795 1.21195 0.79122 0.95862 1.01744 1.22334 0.95991 0.94554 0.98042 0.88960 1.21470 0.89302 0.93019 0.94908 1.44800 1.09878 1.50892 1.29809 1.19432 0.97381 1.17396 1.02902 0.90613 1.25620 0.95853 1.02396 1.01942 1.70055 1.02918 1.46883 1.39796 0.85064 0.76756 0.78547 0.78885 1.21295 1.21661 1.19654 1.21776 0.94098 0.90782 0.89644 1.22433 0.93541 0.97889 0.98089 0.91452 1.21601 1.00775 1.01938 0.94124 1.21437 0.81408 1.00352 0.97162 0.89660 0.86830 0.86410 0.85957 0.90278 0.90614 0.87626 0.91249 0.91944 0.75538 0.90302 0.92920 0.96296 0.96095 0.94266 0.91221 0.99238 0.90680 0.92581 0.92811 0.91440 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.67 71.24 0.62 -0.69 16 2 C 0.50 9.46 7.81 87.66 0.68 10.15 16 3 O -0.60 -18.47 16.50 -3.04 -0.05 -18.52 16 4 N -0.61 -9.33 2.97 -817.98 -2.43 -11.76 16 5 C 0.10 0.66 6.34 86.36 0.55 1.21 16 6 C -0.13 -0.87 6.08 30.67 0.19 -0.68 16 7 C -0.10 -1.44 4.46 30.62 0.14 -1.30 16 8 C -0.11 -1.95 2.69 -11.30 -0.03 -1.99 16 9 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 10 C 0.52 13.07 7.15 87.66 0.63 13.69 16 11 O -0.57 -18.46 15.98 -3.03 -0.05 -18.51 16 12 N -0.72 -18.19 5.31 -463.08 -2.46 -20.65 16 13 C 0.14 4.17 4.99 86.38 0.43 4.60 16 14 C -0.09 -2.99 2.48 -9.61 -0.02 -3.01 16 15 H 0.09 2.82 8.04 -2.39 -0.02 2.80 16 16 C 0.14 5.84 6.52 86.73 0.57 6.41 16 17 N -0.63 -33.54 3.39 -691.97 -2.35 -35.89 16 18 C -0.24 -14.15 10.27 84.03 0.86 -13.28 16 19 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 20 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 21 N -0.95 -57.68 10.09 21.65 0.22 -57.46 16 22 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 26 C 0.16 8.13 5.36 86.86 0.47 8.60 16 27 C -0.10 -3.69 3.09 -9.40 -0.03 -3.72 16 28 H 0.07 2.56 8.05 -2.39 -0.02 2.54 16 29 C -0.13 -3.75 9.31 71.98 0.67 -3.08 16 30 C 0.12 2.40 5.61 86.52 0.48 2.88 16 31 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 32 H 0.11 0.35 7.95 -2.38 -0.02 0.33 16 33 H 0.12 0.26 7.69 -2.39 -0.02 0.24 16 34 H 0.12 0.05 5.93 -2.39 -0.01 0.03 16 35 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 38 H 0.07 1.12 8.07 -2.39 -0.02 1.10 16 39 H 0.06 1.06 8.13 -2.38 -0.02 1.04 16 40 H 0.41 9.44 7.89 -92.71 -0.73 8.71 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.05 1.72 8.06 -2.39 -0.02 1.70 16 43 H 0.02 0.82 7.77 -2.38 -0.02 0.80 16 44 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 46 H 0.07 4.02 5.87 -2.39 -0.01 4.00 16 47 H -0.01 -0.56 7.99 -2.39 -0.02 -0.57 16 48 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.05 1.58 8.08 -2.38 -0.02 1.56 16 51 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 52 H 0.08 1.92 6.62 -2.39 -0.02 1.90 16 Total: -1.00 -80.88 405.09 1.74 -79.13 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.17 Total: 18.10 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 6.66 Total: 16.42 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -7.01 Total: -125.76 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.10 Total: -37.03 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -80.88 1.74 -79.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092796992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.247 kcal (2) G-P(sol) polarization free energy of solvation -80.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds