Wall clock time and date at job start Tue Mar 31 2020 20:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47063 * 2 1 4 4 C 1.50705 * 109.47155 * 239.99794 * 2 1 3 5 5 O 1.21277 * 120.00071 * 240.00032 * 4 2 1 6 6 N 1.34782 * 119.99517 * 60.00206 * 4 2 1 7 7 C 1.46499 * 119.99464 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47146 * 179.97438 * 7 6 4 9 9 C 1.53782 * 113.61779 * 184.99624 * 8 7 6 10 10 C 1.53781 * 87.08260 * 219.93457 * 9 8 7 11 11 N 1.46900 * 113.61428 * 270.79940 * 10 9 8 12 12 C 1.46895 * 110.99924 * 203.46824 * 11 10 9 13 13 C 1.50700 * 109.47106 * 180.02562 * 12 11 10 14 14 O 1.21294 * 120.00101 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00188 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00693 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99366 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00595 * 179.97438 * 16 15 13 19 19 N 1.31405 * 119.99867 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47354 * 59.99469 * 20 18 16 22 22 H 1.48505 * 109.46991 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46967 * 299.99256 * 20 18 16 24 24 C 1.53786 * 87.17350 * 25.39213 * 10 9 8 25 25 C 1.52996 * 109.47431 * 119.99812 * 2 1 3 26 26 C 1.53776 * 113.61546 * 277.49910 * 25 2 1 27 27 C 1.53784 * 87.08114 * 220.01464 * 26 25 2 28 28 C 1.53776 * 87.08040 * 25.43436 * 27 26 25 29 29 H 1.09000 * 109.46921 * 60.00486 * 1 2 3 30 30 H 1.09004 * 109.47063 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46927 * 299.99933 * 1 2 3 32 32 H 0.96996 * 120.00536 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.47550 * 59.99677 * 7 6 4 34 34 H 1.09000 * 109.47294 * 299.99273 * 7 6 4 35 35 H 1.08997 * 112.84789 * 316.19733 * 8 7 6 36 36 H 1.09001 * 113.61250 * 105.38275 * 9 8 7 37 37 H 1.08997 * 113.61225 * 334.48116 * 9 8 7 38 38 H 1.09002 * 113.61445 * 139.98212 * 10 9 8 39 39 H 1.00902 * 110.99925 * 79.51829 * 11 10 9 40 40 H 1.08994 * 109.47448 * 300.00310 * 12 11 10 41 41 H 1.09001 * 109.47145 * 60.00387 * 12 11 10 42 42 H 0.97006 * 119.99894 * 359.97438 * 15 13 12 43 43 H 0.97005 * 120.00057 * 179.97438 * 19 18 16 44 44 H 1.08993 * 113.61491 * 89.15923 * 24 10 9 45 45 H 1.09000 * 113.61138 * 220.06261 * 24 10 9 46 46 H 1.09003 * 112.84562 * 48.80169 * 25 2 1 47 47 H 1.08997 * 113.61608 * 334.56349 * 26 25 2 48 48 H 1.09005 * 113.61626 * 105.46438 * 26 25 2 49 49 H 1.08994 * 113.61442 * 270.88035 * 27 26 25 50 50 H 1.09005 * 113.68733 * 139.98857 * 27 26 25 51 51 H 1.08996 * 113.61375 * 220.02153 * 28 27 26 52 52 H 1.08997 * 113.69454 * 89.12343 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1946 -0.9409 -3.6507 8 6 1.6842 -0.2200 -4.9000 9 6 2.0399 -0.9366 -6.2133 10 6 2.3163 0.4552 -6.8062 11 7 1.1339 1.0824 -7.4116 12 6 1.5239 2.0857 -8.4111 13 6 0.2875 2.7065 -9.0085 14 8 -0.8106 2.3487 -8.6378 15 7 0.4018 3.6594 -9.9548 16 6 -0.7230 4.2246 -10.4980 17 1 -1.7007 3.9060 -10.1678 18 6 -0.6051 5.2073 -11.4732 19 7 0.5845 5.5953 -11.8746 20 14 -2.1377 5.9768 -12.2138 21 1 -2.9319 6.6288 -11.1416 22 1 -1.7435 6.9916 -13.2238 23 1 -2.9562 4.9223 -12.8643 24 6 2.5969 0.9275 -5.3698 25 6 2.0401 -0.7212 1.2492 26 6 2.0721 0.1676 2.5037 27 6 3.4108 -0.5052 2.8502 28 6 3.5739 -0.7767 1.3454 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1488 0.5385 -2.5436 33 1 1.8309 -1.9685 -3.6506 34 1 3.2846 -0.9413 -3.6510 35 1 0.6338 0.0615 -4.8267 36 1 1.1948 -1.4477 -6.6745 37 1 2.9278 -1.5647 -6.1414 38 1 3.1915 0.4873 -7.4552 39 1 0.5383 1.4881 -6.7053 40 1 2.1244 2.8599 -7.9337 41 1 2.1070 1.6072 -9.1979 42 1 1.2799 3.9458 -10.2511 43 1 0.6668 6.2811 -12.5557 44 1 3.6373 0.8099 -5.0669 45 1 2.2008 1.9191 -5.1511 46 1 1.5574 -1.6855 1.4079 47 1 2.1622 1.2312 2.2831 48 1 1.2759 -0.0522 3.2150 49 1 3.3028 -1.4101 3.4481 50 1 4.1549 0.1819 3.2530 51 1 3.9901 -1.7589 1.1216 52 1 4.0745 0.0279 0.8069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100436807.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:34 Heat of formation + Delta-G solvation = -48.418374 kcal Electronic energy + Delta-G solvation = -28390.008584 eV Core-core repulsion = 24389.976888 eV Total energy + Delta-G solvation = -4000.031696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62728 -39.65700 -38.43117 -37.99287 -35.02921 -34.06874 -33.52225 -32.76462 -31.21666 -28.28347 -26.41858 -26.17472 -25.75313 -25.68209 -24.05748 -23.35175 -22.17750 -20.42204 -19.77788 -19.30921 -18.99177 -17.92819 -17.37043 -16.54887 -16.06952 -15.91050 -15.56070 -15.40919 -15.27313 -14.76676 -14.61618 -14.41094 -14.10294 -13.89985 -13.73432 -13.21478 -13.07971 -12.89994 -12.75142 -12.68460 -12.58281 -12.54906 -12.28429 -12.01039 -11.91701 -11.63954 -11.54619 -11.51941 -11.04917 -10.95220 -10.87753 -10.70634 -10.52657 -10.45750 -10.43158 -10.31212 -10.22623 -9.74189 -9.51998 -9.24968 -8.47838 -8.07471 -7.97758 -6.43449 -3.84468 2.45429 2.94245 3.18714 3.24605 3.28884 3.88607 4.02957 4.14717 4.24997 4.27193 4.29940 4.44438 4.49626 4.57380 4.62538 4.66750 4.81226 4.88644 4.94900 4.98085 5.11193 5.15626 5.25155 5.33275 5.35737 5.41735 5.42247 5.44608 5.50161 5.56752 5.59045 5.59893 5.67600 5.72260 5.73297 5.79569 5.87486 5.91269 5.96617 6.05662 6.08880 6.13325 6.18998 6.27154 6.32442 7.23941 7.27899 7.53185 7.63586 8.02701 8.04125 8.59182 9.15822 9.52200 10.03560 10.74119 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020667 B = 0.001592 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.524009 B =17581.412608 C =18247.008532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 H 0.096 0.904 4 C 0.515 3.485 5 O -0.538 6.538 6 N -0.729 5.729 7 C 0.131 3.869 8 C -0.123 4.123 9 C -0.121 4.121 10 C 0.068 3.932 11 N -0.648 5.648 12 C 0.051 3.949 13 C 0.440 3.560 14 O -0.585 6.585 15 N -0.563 5.563 16 C -0.301 4.301 17 H 0.102 0.898 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.166 4.166 25 C -0.089 4.089 26 C -0.136 4.136 27 C -0.147 4.147 28 C -0.123 4.123 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.400 0.600 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.350 0.650 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.072 0.928 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 -9.920 24.615 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.114 0.886 4 C 0.301 3.699 5 O -0.414 6.414 6 N -0.381 5.381 7 C 0.007 3.993 8 C -0.142 4.142 9 C -0.160 4.160 10 C -0.044 4.044 11 N -0.280 5.280 12 C -0.081 4.081 13 C 0.225 3.775 14 O -0.469 6.469 15 N -0.199 5.199 16 C -0.431 4.431 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.206 4.206 25 C -0.108 4.108 26 C -0.173 4.173 27 C -0.184 4.184 28 C -0.161 4.161 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.235 0.765 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.170 0.830 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.111 0.889 47 H 0.099 0.901 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.829 -11.220 24.296 27.619 hybrid contribution -0.100 1.802 -0.188 1.815 sum 6.730 -9.417 24.107 26.742 Atomic orbital electron populations 1.21760 0.92794 1.02813 1.02760 1.21387 0.97556 1.00491 0.92997 0.88611 1.20666 0.80010 0.84639 0.84542 1.90687 1.37666 1.26234 1.86824 1.46095 1.53959 1.32274 1.05773 1.21389 0.98971 0.96123 0.82768 1.22838 1.00260 0.97462 0.93616 1.23022 1.02248 0.96582 0.94170 1.22584 0.93245 0.95453 0.93079 1.59934 1.15518 1.34617 1.17898 1.21708 0.96804 0.93786 0.95826 1.19817 0.90044 0.83538 0.84098 1.90521 1.27706 1.64507 1.64165 1.41856 1.09643 1.33888 1.34532 1.19659 0.87977 1.17287 1.18148 0.87971 1.25260 0.98144 0.97280 0.97183 1.69602 1.22374 1.31170 1.31118 0.85914 0.80958 0.78674 0.78642 1.19936 1.20965 1.19865 1.23824 1.00061 0.98235 0.98440 1.22349 0.97048 0.98949 0.92410 1.22983 0.97908 0.99175 0.97282 1.22855 0.97591 1.00729 0.97249 1.22793 0.95640 1.02463 0.95180 0.92049 0.92050 0.91302 0.76539 0.91508 0.91525 0.88419 0.90037 0.89780 0.89795 0.82967 0.93808 0.89509 0.77446 0.91805 0.89759 0.91455 0.88927 0.90122 0.91505 0.90331 0.91624 0.90936 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.08 37.16 0.34 -0.49 16 2 C -0.10 -0.72 2.48 -91.77 -0.23 -0.95 16 3 H 0.10 0.57 7.94 -51.93 -0.41 0.15 16 4 C 0.52 5.03 6.96 -10.98 -0.08 4.96 16 5 O -0.54 -7.17 14.85 5.56 0.08 -7.08 16 6 N -0.73 -6.09 5.45 -60.29 -0.33 -6.42 16 7 C 0.13 1.19 5.52 -4.04 -0.02 1.17 16 8 C -0.12 -1.11 3.50 -89.71 -0.31 -1.42 16 9 C -0.12 -1.22 7.44 -25.92 -0.19 -1.41 16 10 C 0.07 0.78 4.26 -66.90 -0.28 0.49 16 11 N -0.65 -9.97 6.19 -107.13 -0.66 -10.63 16 12 C 0.05 0.88 6.02 -4.98 -0.03 0.85 16 13 C 0.44 10.23 7.82 -10.99 -0.09 10.15 16 14 O -0.58 -15.68 15.78 5.55 0.09 -15.59 16 15 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 16 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 17 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 20 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.17 -1.57 7.18 -25.82 -0.19 -1.75 16 25 C -0.09 -0.66 2.72 -89.81 -0.24 -0.91 16 26 C -0.14 -0.81 7.63 -25.92 -0.20 -1.01 16 27 C -0.15 -0.95 8.08 -25.92 -0.21 -1.16 16 28 C -0.12 -1.02 6.19 -25.92 -0.16 -1.18 16 29 H 0.06 0.31 7.56 -51.93 -0.39 -0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.40 2.60 7.89 -40.82 -0.32 2.28 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 35 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.08 0.93 7.88 -51.93 -0.41 0.52 16 39 H 0.35 5.52 7.79 -39.29 -0.31 5.21 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 42 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 45 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.08 0.43 7.96 -51.93 -0.41 0.02 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.07 0.72 7.96 -51.93 -0.41 0.30 16 52 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 419.41 15.07 6.32 6.32 Total: -1.00 -32.27 419.41 -10.22 -42.49 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -9.23 Total: 13.49 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.13 Total: -0.65 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.33 Total: -54.83 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.17 Total: -22.68 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.27 -10.22 -42.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100436807.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.932 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds