Wall clock time and date at job start Tue Mar 31 2020 20:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47063 * 2 1 4 4 C 1.50705 * 109.47155 * 239.99794 * 2 1 3 5 5 O 1.21277 * 120.00071 * 240.00032 * 4 2 1 6 6 N 1.34782 * 119.99517 * 60.00206 * 4 2 1 7 7 C 1.46499 * 119.99464 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47146 * 179.97438 * 7 6 4 9 9 C 1.53782 * 113.61779 * 184.99624 * 8 7 6 10 10 C 1.53781 * 87.08260 * 219.93457 * 9 8 7 11 11 N 1.46900 * 113.61428 * 270.79940 * 10 9 8 12 12 C 1.46895 * 110.99924 * 203.46824 * 11 10 9 13 13 C 1.50700 * 109.47106 * 180.02562 * 12 11 10 14 14 O 1.21294 * 120.00101 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00188 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00693 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99366 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00595 * 179.97438 * 16 15 13 19 19 N 1.31405 * 119.99867 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47354 * 59.99469 * 20 18 16 22 22 H 1.48505 * 109.46991 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46967 * 299.99256 * 20 18 16 24 24 C 1.53786 * 87.17350 * 25.39213 * 10 9 8 25 25 C 1.52996 * 109.47431 * 119.99812 * 2 1 3 26 26 C 1.53776 * 113.61546 * 277.49910 * 25 2 1 27 27 C 1.53784 * 87.08114 * 220.01464 * 26 25 2 28 28 C 1.53776 * 87.08040 * 25.43436 * 27 26 25 29 29 H 1.09000 * 109.46921 * 60.00486 * 1 2 3 30 30 H 1.09004 * 109.47063 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46927 * 299.99933 * 1 2 3 32 32 H 0.96996 * 120.00536 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.47550 * 59.99677 * 7 6 4 34 34 H 1.09000 * 109.47294 * 299.99273 * 7 6 4 35 35 H 1.08997 * 112.84789 * 316.19733 * 8 7 6 36 36 H 1.09001 * 113.61250 * 105.38275 * 9 8 7 37 37 H 1.08997 * 113.61225 * 334.48116 * 9 8 7 38 38 H 1.09002 * 113.61445 * 139.98212 * 10 9 8 39 39 H 1.00902 * 110.99925 * 79.51829 * 11 10 9 40 40 H 1.08994 * 109.47448 * 300.00310 * 12 11 10 41 41 H 1.09001 * 109.47145 * 60.00387 * 12 11 10 42 42 H 0.97006 * 119.99894 * 359.97438 * 15 13 12 43 43 H 0.97005 * 120.00057 * 179.97438 * 19 18 16 44 44 H 1.08993 * 113.61491 * 89.15923 * 24 10 9 45 45 H 1.09000 * 113.61138 * 220.06261 * 24 10 9 46 46 H 1.09003 * 112.84562 * 48.80169 * 25 2 1 47 47 H 1.08997 * 113.61608 * 334.56349 * 26 25 2 48 48 H 1.09005 * 113.61626 * 105.46438 * 26 25 2 49 49 H 1.08994 * 113.61442 * 270.88035 * 27 26 25 50 50 H 1.09005 * 113.68733 * 139.98857 * 27 26 25 51 51 H 1.08996 * 113.61375 * 220.02153 * 28 27 26 52 52 H 1.08997 * 113.69454 * 89.12343 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1946 -0.9409 -3.6507 8 6 1.6842 -0.2200 -4.9000 9 6 2.0399 -0.9366 -6.2133 10 6 2.3163 0.4552 -6.8062 11 7 1.1339 1.0824 -7.4116 12 6 1.5239 2.0857 -8.4111 13 6 0.2875 2.7065 -9.0085 14 8 -0.8106 2.3487 -8.6378 15 7 0.4018 3.6594 -9.9548 16 6 -0.7230 4.2246 -10.4980 17 1 -1.7007 3.9060 -10.1678 18 6 -0.6051 5.2073 -11.4732 19 7 0.5845 5.5953 -11.8746 20 14 -2.1377 5.9768 -12.2138 21 1 -2.9319 6.6288 -11.1416 22 1 -1.7435 6.9916 -13.2238 23 1 -2.9562 4.9223 -12.8643 24 6 2.5969 0.9275 -5.3698 25 6 2.0401 -0.7212 1.2492 26 6 2.0721 0.1676 2.5037 27 6 3.4108 -0.5052 2.8502 28 6 3.5739 -0.7767 1.3454 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1488 0.5385 -2.5436 33 1 1.8309 -1.9685 -3.6506 34 1 3.2846 -0.9413 -3.6510 35 1 0.6338 0.0615 -4.8267 36 1 1.1948 -1.4477 -6.6745 37 1 2.9278 -1.5647 -6.1414 38 1 3.1915 0.4873 -7.4552 39 1 0.5383 1.4881 -6.7053 40 1 2.1244 2.8599 -7.9337 41 1 2.1070 1.6072 -9.1979 42 1 1.2799 3.9458 -10.2511 43 1 0.6668 6.2811 -12.5557 44 1 3.6373 0.8099 -5.0669 45 1 2.2008 1.9191 -5.1511 46 1 1.5574 -1.6855 1.4079 47 1 2.1622 1.2312 2.2831 48 1 1.2759 -0.0522 3.2150 49 1 3.3028 -1.4101 3.4481 50 1 4.1549 0.1819 3.2530 51 1 3.9901 -1.7589 1.1216 52 1 4.0745 0.0279 0.8069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100436807.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:33 Heat of formation + Delta-G solvation = -70.497833 kcal Electronic energy + Delta-G solvation = -28390.966021 eV Core-core repulsion = 24389.976888 eV Total energy + Delta-G solvation = -4000.989133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35394 -40.61348 -39.82975 -39.01334 -36.16685 -35.75727 -34.49655 -33.64203 -33.20630 -29.28772 -27.75186 -26.88816 -26.55054 -26.22803 -25.69623 -24.13039 -22.96742 -21.15840 -21.09155 -20.34229 -19.91738 -19.86860 -18.09195 -17.69741 -17.31413 -16.87251 -16.58917 -16.32454 -16.23171 -16.12696 -15.86933 -15.50496 -15.43726 -14.97625 -14.73648 -14.42985 -14.18112 -13.71510 -13.57726 -13.49341 -13.40870 -13.28178 -13.22239 -13.20783 -13.08018 -12.91536 -12.63843 -12.55633 -12.42843 -12.16786 -12.12388 -11.78409 -11.50101 -11.43094 -11.39585 -11.29287 -11.15084 -10.97214 -10.50250 -10.32250 -10.02536 -10.01353 -9.26920 -8.46184 -5.95117 1.40362 1.42513 1.53286 1.70039 2.05653 2.25062 2.29480 2.89610 3.21149 3.48336 3.55746 3.62631 3.69717 3.75322 3.76850 3.83816 4.01207 4.05936 4.08851 4.29539 4.31252 4.36465 4.40821 4.43338 4.49351 4.55085 4.67702 4.71875 4.83198 4.85939 4.86655 4.89202 4.89425 4.93388 4.95201 5.04997 5.11146 5.19131 5.20190 5.24770 5.29921 5.35794 5.41329 5.41570 5.54913 5.63120 5.93975 6.16875 6.44920 6.59538 6.60453 7.12788 7.30391 7.56588 8.11739 8.70816 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020667 B = 0.001592 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.524009 B =17581.412608 C =18247.008532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.114 0.886 4 C 0.510 3.490 5 O -0.579 6.579 6 N -0.721 5.721 7 C 0.137 3.863 8 C -0.111 4.111 9 C -0.118 4.118 10 C 0.060 3.940 11 N -0.663 5.663 12 C 0.067 3.933 13 C 0.437 3.563 14 O -0.624 6.624 15 N -0.572 5.572 16 C -0.336 4.336 17 H 0.079 0.921 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.993 3.007 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.153 4.153 25 C -0.093 4.093 26 C -0.124 4.124 27 C -0.144 4.144 28 C -0.130 4.130 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.411 0.589 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.346 0.654 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.073 0.927 51 H 0.047 0.953 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.383 -8.865 25.418 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.132 0.868 4 C 0.298 3.702 5 O -0.458 6.458 6 N -0.373 5.373 7 C 0.013 3.987 8 C -0.130 4.130 9 C -0.157 4.157 10 C -0.051 4.051 11 N -0.295 5.295 12 C -0.066 4.066 13 C 0.224 3.776 14 O -0.511 6.511 15 N -0.210 5.210 16 C -0.466 4.466 17 H 0.097 0.903 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.816 3.184 21 H -0.196 1.196 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.192 4.192 25 C -0.112 4.112 26 C -0.162 4.162 27 C -0.181 4.181 28 C -0.168 4.168 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.247 0.753 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.165 0.835 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.066 0.934 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.121 -10.150 25.096 27.992 hybrid contribution -0.149 1.397 -0.430 1.469 sum 6.972 -8.753 24.666 27.086 Atomic orbital electron populations 1.21759 0.91608 1.02481 1.03962 1.21406 0.98386 1.00780 0.91239 0.86842 1.21211 0.79290 0.84180 0.85517 1.90673 1.39608 1.28131 1.87409 1.46050 1.53594 1.32360 1.05299 1.21260 0.98684 0.95667 0.83051 1.22701 0.99992 0.97128 0.93132 1.23029 1.02442 0.96009 0.94212 1.22679 0.92105 0.96065 0.94209 1.59926 1.17421 1.34037 1.18079 1.21555 0.93654 0.94671 0.96677 1.20906 0.91568 0.82293 0.82815 1.90488 1.30045 1.65428 1.65108 1.41928 1.09156 1.34609 1.35264 1.19643 0.88071 1.19006 1.19875 0.90293 1.26028 1.01154 0.97070 0.96904 1.69663 1.23771 1.31330 1.31257 0.84993 0.77464 0.77911 0.77992 1.19631 1.19509 1.19815 1.23730 1.00826 0.98085 0.96554 1.22352 0.96190 0.99009 0.93609 1.22944 0.97637 0.99359 0.96229 1.22857 0.98318 1.01097 0.95840 1.22788 0.96271 1.00955 0.96756 0.91209 0.93155 0.89749 0.75255 0.92596 0.91850 0.88868 0.91608 0.88038 0.88905 0.83470 0.91452 0.87917 0.76964 0.91294 0.88364 0.91535 0.90226 0.88945 0.90490 0.90214 0.90842 0.93435 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.08 71.98 0.65 -0.73 16 2 C -0.10 -1.24 2.48 -11.54 -0.03 -1.26 16 3 H 0.11 1.07 7.94 -2.38 -0.02 1.05 16 4 C 0.51 9.71 6.96 87.66 0.61 10.32 16 5 O -0.58 -15.73 14.85 -3.02 -0.04 -15.78 16 6 N -0.72 -11.24 5.45 -463.05 -2.52 -13.76 16 7 C 0.14 2.36 5.52 86.38 0.48 2.84 16 8 C -0.11 -1.84 3.50 -10.21 -0.04 -1.88 16 9 C -0.12 -2.20 7.44 31.12 0.23 -1.97 16 10 C 0.06 1.26 4.26 45.44 0.19 1.45 16 11 N -0.66 -19.65 6.19 -492.86 -3.05 -22.70 16 12 C 0.07 2.20 6.02 85.56 0.52 2.71 16 13 C 0.44 20.40 7.82 87.66 0.69 21.09 16 14 O -0.62 -34.09 15.78 -3.07 -0.05 -34.14 16 15 N -0.57 -29.01 5.29 -306.99 -1.62 -30.64 16 16 C -0.34 -18.96 9.68 84.04 0.81 -18.15 16 17 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 18 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 19 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 20 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 C -0.15 -2.54 7.18 31.18 0.22 -2.32 16 25 C -0.09 -1.33 2.72 -10.27 -0.03 -1.36 16 26 C -0.12 -1.24 7.63 31.12 0.24 -1.00 16 27 C -0.14 -1.72 8.08 31.12 0.25 -1.47 16 28 C -0.13 -2.16 6.19 31.12 0.19 -1.97 16 29 H 0.07 0.57 7.56 -2.39 -0.02 0.55 16 30 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.41 4.63 7.89 -92.71 -0.73 3.90 16 33 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.06 1.16 7.86 -2.39 -0.02 1.14 16 35 H 0.09 1.68 8.05 -2.39 -0.02 1.66 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 1.55 8.10 -2.39 -0.02 1.54 16 38 H 0.09 1.82 7.88 -2.39 -0.02 1.80 16 39 H 0.35 10.66 7.79 -89.69 -0.70 9.96 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.10 3.09 8.13 -2.39 -0.02 3.07 16 42 H 0.40 19.04 7.90 -92.70 -0.73 18.31 16 43 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 44 H 0.10 1.42 7.91 -2.39 -0.02 1.40 16 45 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.09 0.73 7.96 -2.39 -0.02 0.71 16 48 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 49 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.05 1.00 7.96 -2.39 -0.02 0.99 16 52 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -70.79 419.41 -0.76 -71.55 By element: Atomic # 1 Polarization: 44.88 SS G_CDS: -1.24 Total: 43.64 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.46 Total: 6.16 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -6.91 Total: -115.94 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.09 Total: -49.91 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -70.79 -0.76 -71.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100436807.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.054 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds