Wall clock time and date at job start Tue Mar 31 2020 21:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50703 * 120.00521 * 2 1 4 4 C 1.50705 * 119.99596 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47349 * 94.99947 * 4 2 1 6 6 H 1.09007 * 109.46884 * 304.99909 * 5 4 2 7 7 C 1.53004 * 109.47300 * 64.99524 * 5 4 2 8 8 C 1.50698 * 109.47524 * 185.00021 * 5 4 2 9 9 O 1.21290 * 119.99787 * 359.97438 * 8 5 4 10 10 N 1.34771 * 120.00042 * 180.02562 * 8 5 4 11 11 C 1.46509 * 119.99581 * 179.97438 * 10 8 5 12 12 C 1.53001 * 109.46802 * 179.97438 * 11 10 8 13 13 C 1.53781 * 113.61341 * 174.99846 * 12 11 10 14 14 C 1.53781 * 87.08070 * 140.06609 * 13 12 11 15 15 N 1.46900 * 113.61428 * 219.93557 * 14 13 12 16 16 C 1.46895 * 110.99924 * 203.46824 * 15 14 13 17 17 C 1.50700 * 109.47106 * 180.02562 * 16 15 14 18 18 O 1.21294 * 120.00101 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00188 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00693 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99366 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00595 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99765 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00044 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46971 * 90.00384 * 24 22 20 26 26 H 1.48500 * 109.47214 * 210.00448 * 24 22 20 27 27 H 1.48501 * 109.46973 * 330.00376 * 24 22 20 28 28 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 29 29 H 1.08000 * 120.00602 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99682 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47029 * 270.00150 * 3 2 1 32 32 H 1.08999 * 109.46891 * 30.00350 * 3 2 1 33 33 H 1.08998 * 109.47031 * 150.00452 * 3 2 1 34 34 H 1.08995 * 109.47062 * 334.99577 * 4 2 1 35 35 H 1.09001 * 109.47035 * 214.99488 * 4 2 1 36 36 H 1.08997 * 109.47363 * 180.02562 * 7 5 4 37 37 H 1.09002 * 109.47146 * 300.00793 * 7 5 4 38 38 H 1.08998 * 109.46860 * 60.00129 * 7 5 4 39 39 H 0.96997 * 120.00572 * 359.97438 * 10 8 5 40 40 H 1.09002 * 109.47110 * 59.99931 * 11 10 8 41 41 H 1.08998 * 109.47069 * 299.99860 * 11 10 8 42 42 H 1.09003 * 112.84746 * 43.80477 * 12 11 10 43 43 H 1.08999 * 113.61181 * 25.51665 * 13 12 11 44 44 H 1.08998 * 113.61680 * 254.61217 * 13 12 11 45 45 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 46 46 H 1.00902 * 110.99925 * 79.51829 * 15 14 13 47 47 H 1.08994 * 109.47448 * 300.00310 * 16 15 14 48 48 H 1.09001 * 109.47145 * 60.00387 * 16 15 14 49 49 H 0.97006 * 119.99894 * 359.97438 * 19 17 16 50 50 H 0.97003 * 119.99901 * 179.97438 * 23 22 20 51 51 H 1.08992 * 113.61675 * 140.02412 * 28 14 13 52 52 H 1.09000 * 113.60973 * 270.92699 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4272 -1.6834 -1.4378 6 1 1.5243 -1.7026 -2.0481 7 6 3.4044 -0.6517 -2.0049 8 6 3.0714 -3.0458 -1.4510 9 8 3.2248 -3.6541 -0.4130 10 7 3.4779 -3.5876 -2.6161 11 6 4.1046 -4.9119 -2.6288 12 6 4.4684 -5.2901 -4.0660 13 6 5.2441 -6.6133 -4.1772 14 6 4.4000 -6.9120 -5.4275 15 7 3.9764 -8.3148 -5.5302 16 6 3.6844 -8.6759 -6.9238 17 6 3.2534 -10.1185 -6.9892 18 8 3.1948 -10.7805 -5.9746 19 7 2.9331 -10.6730 -8.1751 20 6 2.5405 -11.9852 -8.2346 21 1 2.4884 -12.5747 -7.3312 22 6 2.2098 -12.5567 -9.4571 23 7 1.8340 -13.8147 -9.5141 24 14 2.2993 -11.5370 -11.0197 25 1 3.6558 -11.6569 -11.6119 26 1 1.2898 -12.0297 -11.9909 27 1 2.0236 -10.1136 -10.6983 28 6 3.3267 -5.9863 -4.8308 29 1 -0.5401 -0.9352 0.0004 30 1 -0.5400 0.9354 0.0004 31 1 2.2452 1.6197 -1.0277 32 1 1.4745 2.0647 0.5139 33 1 3.0160 1.1746 0.5138 34 1 1.4384 -2.0856 0.4334 35 1 2.9741 -1.1992 0.5888 36 1 3.6633 -0.9209 -3.0289 37 1 2.9384 0.3337 -1.9953 38 1 4.3073 -0.6326 -1.3946 39 1 3.3555 -3.1010 -3.4462 40 1 3.4086 -5.6471 -2.2250 41 1 5.0073 -4.8924 -2.0182 42 1 4.9255 -4.4683 -4.6171 43 1 5.0581 -7.2992 -3.3507 44 1 6.3052 -6.4809 -4.3882 45 1 4.8385 -6.5336 -6.3509 46 1 3.1820 -8.4970 -4.9354 47 1 2.8844 -8.0405 -7.3038 48 1 4.5790 -8.5357 -7.5305 49 1 2.9796 -10.1434 -8.9865 50 1 1.6027 -14.2136 -10.3675 51 1 2.8409 -5.3483 -5.5689 52 1 2.6175 -6.5012 -4.1827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100587539.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:56 Heat of formation + Delta-G solvation = -46.945663 kcal Electronic energy + Delta-G solvation = -27968.630918 eV Core-core repulsion = 23968.663083 eV Total energy + Delta-G solvation = -3999.967835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.46960 -39.47911 -38.25388 -37.22553 -35.17080 -34.11983 -33.49707 -32.92210 -31.64968 -28.51825 -28.32927 -26.87113 -26.45143 -25.82919 -24.11852 -23.47844 -21.61849 -20.61707 -19.79006 -19.26229 -18.78626 -18.27789 -17.40254 -16.57528 -16.09526 -16.02860 -15.73465 -15.36216 -15.08605 -14.83635 -14.67747 -14.52098 -14.34784 -14.01865 -13.93378 -13.52021 -13.42720 -13.05125 -12.75380 -12.60253 -12.57387 -12.52881 -12.47013 -12.20819 -12.05685 -11.85881 -11.72037 -11.66436 -11.46040 -11.34236 -11.19182 -11.11224 -10.73378 -10.60917 -10.53174 -10.05148 -9.97554 -9.57814 -9.42162 -9.35303 -8.58063 -8.19179 -8.09066 -6.31385 -3.82847 1.75960 2.34417 2.86155 3.01198 3.05995 3.14092 3.73770 4.07050 4.10506 4.14942 4.31146 4.34932 4.40399 4.42054 4.59887 4.63288 4.67930 4.73947 4.86970 4.92827 5.03287 5.06620 5.08386 5.19012 5.22642 5.24732 5.27303 5.39011 5.43467 5.50811 5.53009 5.54635 5.61020 5.64221 5.65737 5.71696 5.73718 5.75980 5.88254 5.92431 5.97272 6.12363 6.20490 6.23930 6.43427 7.15184 7.16399 7.56996 7.59078 7.91461 8.14483 8.59535 8.94824 9.42170 9.82589 10.81800 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022604 B = 0.001485 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.394514 B =18845.963711 C =19145.176536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.068 4.068 5 C -0.104 4.104 6 H 0.097 0.903 7 C -0.149 4.149 8 C 0.514 3.486 9 O -0.540 6.540 10 N -0.728 5.728 11 C 0.130 3.870 12 C -0.124 4.124 13 C -0.116 4.116 14 C 0.069 3.931 15 N -0.657 5.657 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.565 6.565 19 N -0.591 5.591 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.166 4.166 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.400 0.600 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.353 0.647 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.066 0.934 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 33.430 11.424 35.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.124 4.124 3 C -0.179 4.179 4 C -0.105 4.105 5 C -0.126 4.126 6 H 0.115 0.885 7 C -0.207 4.207 8 C 0.300 3.700 9 O -0.416 6.416 10 N -0.380 5.380 11 C 0.006 3.994 12 C -0.144 4.144 13 C -0.155 4.155 14 C -0.043 4.043 15 N -0.289 5.289 16 C -0.085 4.085 17 C 0.234 3.766 18 O -0.446 6.446 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.205 4.205 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.234 0.766 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.174 0.826 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.084 0.916 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.279 32.039 12.712 34.625 hybrid contribution -0.972 1.308 -2.064 2.630 sum 2.307 33.347 10.648 35.082 Atomic orbital electron populations 1.23744 0.95271 1.01981 1.02207 1.21726 0.95348 0.95604 0.99758 1.21006 1.00288 0.94507 1.02051 1.20510 1.00889 0.94430 0.94694 1.21293 0.99947 0.92267 0.99061 0.88472 1.21950 0.98969 0.99036 1.00712 1.20681 0.78149 0.87653 0.83501 1.90723 1.55501 1.63283 1.32113 1.46050 1.62406 1.20052 1.09443 1.21399 0.97885 0.83602 0.96465 1.22707 0.98727 0.98106 0.94812 1.23048 0.98924 0.94634 0.98906 1.22996 0.96024 0.87272 0.97963 1.60002 1.43100 1.18258 1.07494 1.21741 1.00328 0.95429 0.91003 1.19751 0.83977 0.88524 0.84298 1.90570 1.56578 1.63377 1.34119 1.42210 1.61434 1.12326 1.07067 1.19442 1.41665 0.85141 0.97185 0.86287 1.25036 0.97406 0.95863 0.97833 1.69624 1.44556 1.11543 1.26412 0.86665 0.78930 0.79977 0.83756 1.19597 1.20198 1.19571 1.23904 0.97097 0.99563 0.99957 0.88403 0.88461 0.91163 0.91962 0.91723 0.90382 0.90539 0.92259 0.90705 0.91979 0.76628 0.91134 0.91318 0.88760 0.89056 0.91026 0.88609 0.82607 0.93787 0.89524 0.79714 0.91619 0.91562 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.15 13.89 29.02 0.40 -0.74 16 2 C -0.12 -0.74 4.94 -101.06 -0.50 -1.24 16 3 C -0.12 -0.54 9.01 36.01 0.32 -0.21 16 4 C -0.07 -0.49 4.22 -27.88 -0.12 -0.60 16 5 C -0.10 -0.66 2.71 -91.77 -0.25 -0.91 16 6 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 7 C -0.15 -0.66 8.64 37.16 0.32 -0.34 16 8 C 0.51 4.75 7.15 -10.99 -0.08 4.67 16 9 O -0.54 -7.30 15.92 5.55 0.09 -7.21 16 10 N -0.73 -5.30 5.45 -60.29 -0.33 -5.63 16 11 C 0.13 1.10 5.52 -4.04 -0.02 1.08 16 12 C -0.12 -0.91 3.76 -89.67 -0.34 -1.24 16 13 C -0.12 -1.09 7.44 -25.92 -0.19 -1.28 16 14 C 0.07 0.72 4.16 -66.90 -0.28 0.45 16 15 N -0.66 -9.83 6.24 -107.13 -0.67 -10.49 16 16 C 0.05 0.77 6.02 -4.98 -0.03 0.74 16 17 C 0.45 10.17 7.82 -10.99 -0.09 10.08 16 18 O -0.56 -15.24 15.78 5.55 0.09 -15.15 16 19 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 20 C -0.31 -8.68 10.16 -14.93 -0.15 -8.83 16 21 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 24 Si 0.88 19.28 27.74 -169.99 -4.71 14.56 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 28 C -0.17 -1.44 7.28 -25.77 -0.19 -1.62 16 29 H 0.10 0.58 7.99 -52.49 -0.42 0.16 16 30 H 0.10 0.48 8.04 -52.49 -0.42 0.05 16 31 H 0.07 0.25 6.39 -51.93 -0.33 -0.09 16 32 H 0.06 0.25 8.06 -51.93 -0.42 -0.17 16 33 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 34 H 0.08 0.68 7.80 -51.93 -0.41 0.27 16 35 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.06 0.20 7.56 -51.93 -0.39 -0.20 16 37 H 0.07 0.27 5.08 -51.93 -0.26 0.01 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.40 1.89 7.89 -40.82 -0.32 1.57 16 40 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.92 7.88 -51.93 -0.41 0.51 16 46 H 0.35 5.56 7.91 -39.29 -0.31 5.25 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 49 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 52 H 0.09 0.84 7.59 -51.93 -0.39 0.45 16 LS Contribution 420.02 15.07 6.33 6.33 Total: -1.00 -34.74 420.02 -8.69 -43.43 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -8.93 Total: 12.25 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.28 Total: 1.03 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.28 Total: -55.24 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.18 Total: -22.37 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.74 -8.69 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100587539.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.512 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds