Wall clock time and date at job start Tue Mar 31 2020 19:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99523 * 2 1 4 4 C 1.50697 * 120.00247 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47150 * 94.99780 * 4 2 1 6 6 C 1.50707 * 109.46859 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00165 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99476 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99324 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47035 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.27490 * 55.63074 * 10 9 8 12 12 C 1.53997 * 110.30778 * 293.54560 * 10 9 8 13 13 N 1.47906 * 107.05871 * 242.30679 * 12 10 9 14 14 C 1.46896 * 111.00163 * 214.15425 * 13 12 10 15 15 C 1.50696 * 109.47263 * 170.00158 * 14 13 12 16 16 O 1.21288 * 119.99961 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99977 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99511 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00685 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99643 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00244 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47209 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47339 * 119.99939 * 22 20 18 25 25 H 1.48503 * 109.47358 * 240.00160 * 22 20 18 26 26 C 1.48529 * 105.81645 * 334.66750 * 13 12 10 27 27 C 1.54593 * 110.31247 * 177.82630 * 10 9 8 28 28 H 1.09004 * 110.72424 * 22.33918 * 27 10 9 29 29 C 1.52995 * 110.72702 * 259.23352 * 27 10 9 30 30 H 1.08002 * 120.00516 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99474 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47156 * 240.00182 * 3 2 1 33 33 H 1.08998 * 109.47622 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.46781 * 120.00598 * 3 2 1 35 35 H 1.09002 * 109.46856 * 334.99691 * 4 2 1 36 36 H 1.08994 * 109.46971 * 214.99888 * 4 2 1 37 37 H 1.08990 * 109.47274 * 59.99797 * 5 4 2 38 38 H 1.09004 * 109.46828 * 299.99576 * 5 4 2 39 39 H 0.97000 * 120.00366 * 359.97438 * 8 6 5 40 40 H 1.08998 * 109.47836 * 60.00332 * 9 8 6 41 41 H 1.09005 * 109.47497 * 299.99261 * 9 8 6 42 42 H 1.08998 * 109.91454 * 1.65688 * 12 10 9 43 43 H 1.09004 * 109.92077 * 122.95359 * 12 10 9 44 44 H 1.09002 * 109.47199 * 290.00055 * 14 13 12 45 45 H 1.09006 * 109.47203 * 49.99943 * 14 13 12 46 46 H 0.97001 * 120.00040 * 359.97438 * 17 15 14 47 47 H 0.97001 * 120.00443 * 180.02562 * 21 20 18 48 48 H 1.08995 * 110.67216 * 280.77320 * 26 13 12 49 49 H 1.09004 * 110.80922 * 157.70497 * 26 13 12 50 50 H 1.08993 * 109.47208 * 59.99251 * 29 27 10 51 51 H 1.08996 * 109.47135 * 179.97438 * 29 27 10 52 52 H 1.09002 * 109.46585 * 299.99440 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 6 3.1805 -2.9887 -1.4383 7 8 3.4045 -3.5600 -0.3923 8 7 3.6058 -3.5206 -2.6013 9 6 4.3383 -4.7894 -2.6018 10 6 4.7021 -5.1677 -4.0390 11 1 5.2624 -4.3610 -4.5116 12 6 3.4295 -5.4798 -4.8480 13 7 3.5192 -6.8948 -5.2692 14 6 2.9072 -7.0906 -6.5902 15 6 3.2299 -8.4740 -7.0931 16 8 3.9038 -9.2230 -6.4178 17 7 2.7705 -8.8787 -8.2939 18 6 3.0646 -10.1371 -8.7516 19 1 3.6646 -10.8040 -8.1503 20 6 2.5905 -10.5545 -9.9893 21 7 1.8608 -9.7429 -10.7212 22 14 2.9917 -12.2688 -10.6134 23 1 3.8237 -12.9791 -9.6091 24 1 1.7315 -13.0225 -10.8350 25 1 3.7394 -12.1676 -11.8924 26 6 4.9688 -7.2165 -5.3011 27 6 5.5237 -6.4771 -4.0577 28 1 5.3476 -7.0559 -3.1509 29 6 7.0147 -6.1785 -4.2258 30 1 -0.5401 0.9353 0.0004 31 1 -0.5399 -0.9354 0.0004 32 1 2.6901 1.3630 -0.8900 33 1 1.3551 2.1336 0.0005 34 1 2.6901 1.3629 0.8899 35 1 1.4386 -2.0856 0.4334 36 1 2.9742 -1.1990 0.5889 37 1 3.0522 -0.9027 -1.8718 38 1 1.5166 -1.7893 -2.0272 39 1 3.4270 -3.0635 -3.4380 40 1 3.7133 -5.5700 -2.1682 41 1 5.2489 -4.6835 -2.0121 42 1 2.5477 -5.3333 -4.2241 43 1 3.3789 -4.8339 -5.7246 44 1 1.8262 -6.9760 -6.5104 45 1 3.3007 -6.3499 -7.2864 46 1 2.2319 -8.2796 -8.8341 47 1 1.5295 -10.0344 -11.5850 48 1 5.4279 -6.8339 -6.2127 49 1 5.1291 -8.2911 -5.2129 50 1 7.3572 -5.5598 -3.3964 51 1 7.5738 -7.1141 -4.2358 52 1 7.1754 -5.6487 -5.1648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102010896.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:46 Heat of formation + Delta-G solvation = -68.182000 kcal Electronic energy + Delta-G solvation = -28729.042240 eV Core-core repulsion = 24728.153529 eV Total energy + Delta-G solvation = -4000.888711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.20493 -39.35887 -37.82257 -36.77961 -35.04827 -33.97876 -33.09862 -31.76649 -31.25750 -30.08002 -27.78846 -27.61460 -26.20262 -25.22788 -24.40446 -23.01842 -21.10592 -20.49265 -19.78661 -19.23660 -18.78624 -17.88160 -17.28465 -16.43454 -16.05714 -15.96450 -15.38567 -15.18312 -14.88725 -14.69098 -14.63275 -14.29653 -14.06600 -13.92329 -13.58758 -13.55931 -13.32227 -13.10637 -12.78147 -12.73787 -12.45715 -12.18889 -12.09871 -12.06917 -11.76809 -11.60701 -11.53779 -11.41508 -11.25837 -11.16341 -10.92244 -10.86280 -10.55859 -10.51691 -10.34194 -10.25019 -10.02559 -9.51992 -9.40783 -9.25418 -8.38641 -8.03310 -7.90880 -6.44568 -3.85372 1.82481 2.44409 2.98475 3.14402 3.25366 3.32461 3.86703 4.05993 4.26482 4.31921 4.50262 4.52341 4.56539 4.64561 4.72173 4.81623 4.88626 5.06454 5.14385 5.17396 5.20468 5.22793 5.27682 5.30293 5.39610 5.49001 5.53014 5.55361 5.57833 5.60877 5.63605 5.72305 5.79716 5.81132 5.86155 5.94442 5.97246 6.08459 6.13550 6.22500 6.24736 6.26962 6.41279 6.49728 6.70115 7.22715 7.26654 7.29744 7.53020 8.01514 8.03569 8.58696 9.15338 9.50913 10.02515 10.73152 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019026 B = 0.001784 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.290033 B =15695.340403 C =16721.953876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 C -0.120 4.120 4 C -0.071 4.071 5 C -0.135 4.135 6 C 0.510 3.490 7 O -0.541 6.541 8 N -0.730 5.730 9 C 0.130 3.870 10 C -0.107 4.107 11 H 0.080 0.920 12 C 0.035 3.965 13 N -0.495 5.495 14 C 0.037 3.963 15 C 0.442 3.558 16 O -0.580 6.580 17 N -0.562 5.562 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.044 3.956 27 C -0.091 4.091 28 H 0.085 0.915 29 C -0.141 4.141 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.400 0.600 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.048 0.952 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.036 0.964 49 H 0.119 0.881 50 H 0.053 0.947 51 H 0.060 0.940 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 21.745 14.759 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.128 4.128 3 C -0.177 4.177 4 C -0.108 4.108 5 C -0.175 4.175 6 C 0.297 3.703 7 O -0.418 6.418 8 N -0.382 5.382 9 C 0.007 3.993 10 C -0.127 4.127 11 H 0.098 0.902 12 C -0.093 4.093 13 N -0.219 5.219 14 C -0.095 4.095 15 C 0.227 3.773 16 O -0.465 6.465 17 N -0.198 5.198 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.083 4.083 27 C -0.111 4.111 28 H 0.104 0.896 29 C -0.199 4.199 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.234 0.766 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.054 0.946 49 H 0.137 0.863 50 H 0.072 0.928 51 H 0.079 0.921 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.151 20.430 16.123 26.115 hybrid contribution -0.054 0.390 -1.973 2.012 sum 2.097 20.820 14.149 25.260 Atomic orbital electron populations 1.23781 0.95217 1.01975 1.02155 1.21773 0.95454 0.95672 0.99885 1.20889 1.00279 0.94320 1.02224 1.20390 1.00934 0.94287 0.95222 1.21639 1.01276 0.95035 0.99515 1.20713 0.79149 0.86893 0.83578 1.90716 1.56808 1.62838 1.31478 1.46097 1.58215 1.24754 1.09142 1.21453 0.96359 0.85138 0.96373 1.22357 0.96827 0.98810 0.94662 0.90211 1.23052 0.97720 0.90168 0.98358 1.64585 1.14589 1.17482 1.25222 1.22100 1.00774 0.96762 0.89869 1.19710 0.85495 0.88803 0.83252 1.90439 1.42708 1.56047 1.57265 1.41860 1.46803 1.15222 1.15936 1.19759 1.30831 0.90730 1.01528 0.87802 1.25268 0.96592 0.99865 0.96209 1.69617 1.35387 1.36410 1.12837 0.85798 0.78235 0.81654 0.78647 1.19193 1.20723 1.20783 1.23542 0.86305 1.03674 0.94765 1.22150 0.94145 0.94498 1.00288 0.89640 1.21762 0.95130 1.01747 1.01278 0.88481 0.88378 0.91582 0.92040 0.91542 0.90457 0.90502 0.88889 0.88743 0.76598 0.90743 0.91477 0.90385 0.93959 0.89302 0.93445 0.77477 0.91905 0.94566 0.86346 0.92789 0.92088 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 13.90 29.01 0.40 -0.85 16 2 C -0.13 -0.85 5.31 -101.07 -0.54 -1.38 16 3 C -0.12 -0.63 10.12 36.01 0.36 -0.27 16 4 C -0.07 -0.54 4.67 -27.88 -0.13 -0.67 16 5 C -0.13 -0.90 5.68 -27.88 -0.16 -1.06 16 6 C 0.51 5.09 7.83 -10.98 -0.09 5.01 16 7 O -0.54 -7.70 15.98 5.56 0.09 -7.61 16 8 N -0.73 -6.21 5.28 -60.29 -0.32 -6.53 16 9 C 0.13 1.33 4.75 -4.04 -0.02 1.31 16 10 C -0.11 -1.10 2.64 -89.26 -0.24 -1.34 16 11 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 12 C 0.04 0.42 6.05 -2.75 -0.02 0.41 16 13 N -0.49 -8.12 5.26 -231.89 -1.22 -9.34 16 14 C 0.04 0.65 5.52 -4.98 -0.03 0.62 16 15 C 0.44 10.27 7.49 -10.99 -0.08 10.19 16 16 O -0.58 -15.17 13.10 5.55 0.07 -15.10 16 17 N -0.56 -14.09 5.29 -10.97 -0.06 -14.14 16 18 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 22 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.04 0.72 4.74 -1.90 -0.01 0.71 16 27 C -0.09 -1.12 3.20 -88.76 -0.28 -1.40 16 28 H 0.09 1.10 7.86 -51.93 -0.41 0.69 16 29 C -0.14 -1.47 9.16 37.15 0.34 -1.13 16 30 H 0.10 0.53 7.83 -52.49 -0.41 0.12 16 31 H 0.10 0.63 7.99 -52.48 -0.42 0.21 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.28 7.78 -51.93 -0.40 -0.12 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.69 7.94 -51.93 -0.41 0.28 16 36 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.40 2.40 8.32 -40.82 -0.34 2.06 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.91 7.57 -51.93 -0.39 0.52 16 43 H 0.04 0.46 7.57 -51.93 -0.39 0.07 16 44 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.05 0.76 7.81 -51.93 -0.41 0.36 16 46 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.04 0.60 7.89 -51.93 -0.41 0.19 16 49 H 0.12 2.36 5.97 -51.93 -0.31 2.05 16 50 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 52 H 0.05 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 420.32 15.07 6.33 6.33 Total: -1.00 -32.44 420.32 -9.31 -41.76 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -9.19 Total: 10.13 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.72 Total: 2.24 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.87 Total: -53.61 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.16 Total: -22.71 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.44 -9.31 -41.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102010896.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.427 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds