Wall clock time and date at job start Tue Mar 31 2020 19:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00250 * 2 1 4 4 C 1.52999 * 109.47195 * 0.02562 * 3 2 1 5 5 C 1.53003 * 109.47112 * 240.00320 * 3 2 1 6 6 C 1.50697 * 109.47065 * 120.00154 * 3 2 1 7 7 O 1.21280 * 120.00307 * 359.97438 * 6 3 2 8 8 N 1.34779 * 119.99665 * 180.02562 * 6 3 2 9 9 C 1.46503 * 119.99924 * 180.02562 * 8 6 3 10 10 C 1.52996 * 109.47469 * 179.97438 * 9 8 6 11 11 H 1.08997 * 110.28556 * 52.86849 * 10 9 8 12 12 C 1.54378 * 110.32194 * 290.63670 * 10 9 8 13 13 N 1.48559 * 104.59326 * 217.24920 * 12 10 9 14 14 C 1.46897 * 111.00032 * 159.04395 * 13 12 10 15 15 C 1.50697 * 109.47528 * 61.07031 * 14 13 12 16 16 O 1.21298 * 119.99719 * 6.06090 * 15 14 13 17 17 N 1.34779 * 120.00106 * 186.06148 * 15 14 13 18 18 C 1.37095 * 119.99923 * 179.97438 * 17 15 14 19 19 H 1.08009 * 119.99963 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00002 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99826 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47096 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.46873 * 120.00070 * 22 20 18 25 25 H 1.48500 * 109.47071 * 239.99718 * 22 20 18 26 26 C 1.48556 * 104.22370 * 39.48478 * 13 12 10 27 27 C 1.54258 * 110.32703 * 174.99864 * 10 9 8 28 28 H 1.09001 * 110.32062 * 0.02562 * 27 10 9 29 29 C 1.53000 * 110.32330 * 237.89475 * 27 10 9 30 30 H 1.07998 * 120.00116 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99656 * 359.97438 * 1 2 3 32 32 H 1.08000 * 119.99333 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.47502 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.47611 * 300.00414 * 4 3 2 35 35 H 1.08998 * 109.47097 * 60.00059 * 4 3 2 36 36 H 1.09003 * 109.46856 * 300.00062 * 5 3 2 37 37 H 1.09000 * 109.47045 * 59.99651 * 5 3 2 38 38 H 1.09002 * 109.46761 * 180.02562 * 5 3 2 39 39 H 0.96994 * 120.00281 * 359.97438 * 8 6 3 40 40 H 1.09003 * 109.47031 * 59.99374 * 9 8 6 41 41 H 1.09007 * 109.46923 * 299.99788 * 9 8 6 42 42 H 1.08993 * 110.41413 * 336.02913 * 12 10 9 43 43 H 1.09006 * 110.41173 * 98.47456 * 12 10 9 44 44 H 1.09001 * 109.47525 * 181.07491 * 14 13 12 45 45 H 1.09005 * 109.47184 * 301.06717 * 14 13 12 46 46 H 0.96998 * 120.00296 * 359.97438 * 17 15 14 47 47 H 0.97007 * 119.99432 * 180.02562 * 21 20 18 48 48 H 1.09003 * 110.41293 * 201.74012 * 26 13 12 49 49 H 1.08998 * 110.41066 * 79.29430 * 26 13 12 50 50 H 1.08999 * 109.47429 * 60.00267 * 29 27 10 51 51 H 1.09006 * 109.46632 * 180.02562 * 29 27 10 52 52 H 1.08997 * 109.47014 * 299.99364 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0694 2.4680 0.0006 5 6 2.9432 1.3861 -1.2493 6 6 2.9300 1.3848 1.2304 7 8 2.9347 0.4720 2.0290 8 7 3.6988 2.4710 1.4439 9 6 4.5416 2.5483 2.6398 10 6 5.3065 3.8733 2.6399 11 1 4.6169 4.7079 2.5135 12 6 6.3693 3.8789 1.5202 13 7 7.5283 4.5991 2.1078 14 6 8.7688 4.2726 1.3921 15 6 8.6441 4.6967 -0.0486 16 8 7.6687 5.3172 -0.4159 17 7 9.6163 4.3864 -0.9290 18 6 9.5026 4.7717 -2.2398 19 1 8.6337 5.3236 -2.5670 20 6 10.5046 4.4514 -3.1476 21 7 11.5615 3.7795 -2.7495 22 14 10.3499 4.9771 -4.9335 23 1 9.0758 5.7160 -5.1234 24 1 11.4913 5.8573 -5.2910 25 1 10.3594 3.7753 -5.8058 26 6 7.5821 4.1191 3.5127 27 6 6.1043 4.0314 3.9506 28 1 5.9513 3.1648 4.5938 29 6 5.6859 5.3117 4.6763 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.6144 3.4119 0.0011 34 1 0.4423 2.4105 -0.8891 35 1 0.4431 2.4101 0.8908 36 1 3.6514 0.5575 -1.2493 37 1 2.3164 1.3283 -2.1393 38 1 3.4885 2.3298 -1.2490 39 1 3.6947 3.2012 0.8055 40 1 5.2501 1.7201 2.6391 41 1 3.9152 2.4899 3.5300 42 1 6.6494 2.8590 1.2568 43 1 5.9961 4.4099 0.6444 44 1 9.6043 4.7983 1.8545 45 1 8.9443 3.1979 1.4406 46 1 10.3965 3.8905 -0.6353 47 1 12.2612 3.5562 -3.3833 48 1 8.1220 4.8309 4.1372 49 1 8.0519 3.1368 3.5610 50 1 4.6224 5.2656 4.9107 51 1 6.2578 5.4097 5.5991 52 1 5.8799 6.1722 4.0360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102226668.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:50 Heat of formation + Delta-G solvation = -81.885396 kcal Electronic energy + Delta-G solvation = -30083.058708 eV Core-core repulsion = 26081.575773 eV Total energy + Delta-G solvation = -4001.482935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44356 -40.73072 -39.47212 -37.37281 -36.21516 -35.84369 -34.15677 -33.24004 -32.09432 -30.84460 -29.09257 -28.35041 -27.25433 -26.67893 -25.19958 -24.19717 -22.34507 -21.80969 -21.03645 -20.78756 -19.86740 -19.50174 -18.03363 -17.81961 -17.31687 -16.77063 -16.69896 -16.41977 -16.25512 -16.03589 -15.66558 -15.50196 -15.17917 -14.92186 -14.72581 -14.43228 -14.16189 -13.97412 -13.81993 -13.53992 -13.42382 -13.37568 -13.27483 -13.13715 -12.95898 -12.73855 -12.68292 -12.43020 -12.38278 -12.19246 -12.16034 -12.10550 -11.82471 -11.68358 -11.63776 -11.56523 -11.42614 -10.84860 -10.31007 -10.26170 -10.13932 -10.00714 -9.37130 -8.46776 -5.95200 1.29336 1.36228 1.41635 1.55649 1.57283 2.04500 2.25901 2.28328 2.84595 3.20295 3.30202 3.54972 3.56623 3.70714 3.75616 3.85136 3.94856 4.08596 4.22370 4.26263 4.30940 4.34027 4.42378 4.43210 4.52537 4.62808 4.64834 4.67175 4.72301 4.73998 4.76221 4.79866 4.83970 4.95617 5.03846 5.04227 5.16645 5.18678 5.19723 5.25423 5.27274 5.40444 5.41706 5.50743 5.68382 5.80794 5.85605 5.94775 6.09133 6.46515 6.60082 7.12807 7.16132 7.55932 8.10942 8.71058 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008622 B = 0.003160 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.640797 B = 8859.589857 C =11413.738137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C -0.052 4.052 4 C -0.142 4.142 5 C -0.138 4.138 6 C 0.522 3.478 7 O -0.582 6.582 8 N -0.719 5.719 9 C 0.134 3.866 10 C -0.088 4.088 11 H 0.094 0.906 12 C 0.046 3.954 13 N -0.501 5.501 14 C 0.045 3.955 15 C 0.442 3.558 16 O -0.610 6.610 17 N -0.576 5.576 18 C -0.328 4.328 19 H 0.081 0.919 20 C -0.015 4.015 21 N -0.923 5.923 22 Si 0.992 3.008 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.031 3.969 27 C -0.081 4.081 28 H 0.095 0.905 29 C -0.134 4.134 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.410 0.590 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.025 0.975 43 H 0.070 0.930 44 H 0.109 0.891 45 H 0.061 0.939 46 H 0.394 0.606 47 H 0.277 0.723 48 H 0.094 0.906 49 H 0.049 0.951 50 H 0.064 0.936 51 H 0.068 0.932 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.800 -3.223 10.926 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.166 4.166 3 C -0.055 4.055 4 C -0.199 4.199 5 C -0.195 4.195 6 C 0.309 3.691 7 O -0.461 6.461 8 N -0.370 5.370 9 C 0.011 3.989 10 C -0.107 4.107 11 H 0.112 0.888 12 C -0.082 4.082 13 N -0.225 5.225 14 C -0.087 4.087 15 C 0.230 3.770 16 O -0.496 6.496 17 N -0.213 5.213 18 C -0.458 4.458 19 H 0.099 0.901 20 C -0.214 4.214 21 N -0.564 5.564 22 Si 0.816 3.184 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.096 4.096 27 C -0.100 4.100 28 H 0.113 0.887 29 C -0.192 4.192 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.246 0.754 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.043 0.957 43 H 0.089 0.911 44 H 0.127 0.873 45 H 0.079 0.921 46 H 0.228 0.772 47 H 0.086 0.914 48 H 0.113 0.887 49 H 0.067 0.933 50 H 0.083 0.917 51 H 0.087 0.913 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.302 -2.916 11.124 20.775 hybrid contribution 1.165 -0.868 -1.162 1.860 sum -16.137 -3.783 9.962 19.338 Atomic orbital electron populations 1.24172 0.95234 1.03448 0.98846 1.22509 0.96350 0.96282 1.01487 1.19908 0.95786 0.96873 0.92904 1.21977 0.98453 0.95643 1.03801 1.21844 0.99200 1.02387 0.96118 1.20954 0.79629 0.81209 0.87294 1.90654 1.67671 1.39195 1.48616 1.46044 1.44093 1.21043 1.25844 1.21435 0.92911 0.96723 0.87877 1.22186 0.96403 0.96938 0.95194 0.88773 1.23108 0.91621 0.95380 0.98092 1.65150 1.01663 1.53365 1.02341 1.21956 0.95258 1.00001 0.91471 1.20655 0.84079 0.84000 0.88312 1.90459 1.33179 1.45428 1.80543 1.41960 1.20338 1.50582 1.08415 1.19691 1.06311 1.34511 0.85258 0.90098 1.26046 0.94579 0.96571 1.04222 1.69688 1.09524 1.39690 1.37502 0.84882 0.78378 0.78190 0.76978 1.19505 1.19743 1.19744 1.23383 0.97733 0.99447 0.89084 1.21854 0.92741 1.00387 0.95033 0.88717 1.21765 1.01605 0.95864 0.99925 0.87263 0.86346 0.88469 0.90924 0.89237 0.91709 0.93282 0.89497 0.91499 0.75377 0.92937 0.90495 0.95652 0.91118 0.87279 0.92061 0.77215 0.91391 0.88741 0.93298 0.91693 0.91323 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 13.70 67.78 0.93 -1.95 16 2 C -0.15 -3.03 8.00 25.64 0.21 -2.83 16 3 C -0.05 -1.02 0.84 -53.68 -0.05 -1.06 16 4 C -0.14 -2.01 7.02 71.98 0.51 -1.51 16 5 C -0.14 -2.65 8.35 71.98 0.60 -2.05 16 6 C 0.52 13.29 6.47 87.66 0.57 13.86 16 7 O -0.58 -19.27 16.03 -3.03 -0.05 -19.31 16 8 N -0.72 -16.00 5.21 -463.05 -2.41 -18.41 16 9 C 0.13 2.96 4.79 86.38 0.41 3.38 16 10 C -0.09 -1.93 2.74 -9.90 -0.03 -1.95 16 11 H 0.09 1.98 7.71 -2.39 -0.02 1.97 16 12 C 0.05 1.41 4.93 86.45 0.43 1.84 16 13 N -0.50 -15.73 5.18 -886.06 -4.59 -20.32 16 14 C 0.04 1.56 5.38 85.56 0.46 2.02 16 15 C 0.44 20.78 7.43 87.66 0.65 21.43 16 16 O -0.61 -32.53 14.01 -3.09 -0.04 -32.57 16 17 N -0.58 -29.41 5.29 -306.97 -1.62 -31.03 16 18 C -0.33 -18.42 9.68 84.04 0.81 -17.61 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 21 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 22 Si 0.99 42.58 29.55 68.60 2.03 44.60 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 C 0.03 0.70 6.04 86.45 0.52 1.22 16 27 C -0.08 -1.52 3.30 -9.90 -0.03 -1.55 16 28 H 0.09 1.50 7.71 -2.39 -0.02 1.48 16 29 C -0.13 -2.21 8.91 71.98 0.64 -1.57 16 30 H 0.11 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.12 1.50 5.69 -2.91 -0.02 1.48 16 32 H 0.10 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.07 0.93 7.56 -2.39 -0.02 0.91 16 34 H 0.09 0.98 7.50 -2.39 -0.02 0.97 16 35 H 0.06 0.92 7.50 -2.39 -0.02 0.90 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.28 7.56 -2.39 -0.02 1.26 16 39 H 0.41 8.09 7.24 -92.71 -0.67 7.41 16 40 H 0.05 1.33 7.98 -2.39 -0.02 1.31 16 41 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.03 0.83 7.56 -2.39 -0.02 0.81 16 43 H 0.07 2.63 6.53 -2.38 -0.02 2.61 16 44 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 45 H 0.06 1.97 7.98 -2.38 -0.02 1.95 16 46 H 0.39 19.36 7.90 -92.71 -0.73 18.62 16 47 H 0.28 13.98 8.31 -92.70 -0.77 13.21 16 48 H 0.09 1.92 7.86 -2.39 -0.02 1.90 16 49 H 0.05 1.05 7.92 -2.39 -0.02 1.03 16 50 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 52 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -70.95 413.52 0.20 -70.75 By element: Atomic # 1 Polarization: 45.01 SS G_CDS: -0.49 Total: 44.52 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 7.10 Total: 11.35 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -8.35 Total: -119.34 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -0.09 Total: -51.88 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -70.95 0.20 -70.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102226668.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.133 kcal (2) G-P(sol) polarization free energy of solvation -70.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds