Wall clock time and date at job start Tue Mar 31 2020 19:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 120.00049 * 2 1 4 4 C 1.53000 * 109.46912 * 124.99542 * 3 2 1 5 5 C 1.52997 * 109.47060 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00115 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46784 * 179.97438 * 9 8 6 11 11 H 1.08998 * 110.63920 * 56.69992 * 10 9 8 12 12 C 1.54933 * 110.72480 * 293.54415 * 10 9 8 13 13 N 1.48537 * 103.22517 * 204.22829 * 12 10 9 14 14 C 1.46897 * 110.99674 * 159.72213 * 13 12 10 15 15 C 1.50703 * 109.47105 * 170.00084 * 14 13 12 16 16 O 1.21289 * 119.99698 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00222 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00307 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99879 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00368 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99923 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47027 * 59.99847 * 22 20 18 24 24 H 1.48497 * 109.47217 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47212 * 300.00316 * 22 20 18 26 26 C 1.47903 * 105.81802 * 39.20981 * 13 12 10 27 27 C 1.53996 * 107.05754 * 334.66722 * 26 13 12 28 28 H 1.09002 * 110.30713 * 120.14379 * 27 26 13 29 29 C 1.53001 * 110.30856 * 242.30927 * 27 26 13 30 30 H 1.08006 * 119.99867 * 0.02562 * 1 2 3 31 31 H 1.07994 * 120.00051 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.99855 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.46980 * 4.99670 * 3 2 1 34 34 H 1.08992 * 109.47158 * 244.99775 * 3 2 1 35 35 H 1.09002 * 109.47398 * 300.00078 * 4 3 2 36 36 H 1.09001 * 109.47194 * 60.00258 * 4 3 2 37 37 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 38 38 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 39 39 H 0.97003 * 119.99640 * 0.02562 * 8 6 5 40 40 H 1.09002 * 109.46801 * 299.99526 * 9 8 6 41 41 H 1.08992 * 109.46823 * 59.99976 * 9 8 6 42 42 H 1.08997 * 110.66613 * 322.66298 * 12 10 9 43 43 H 1.09000 * 110.66377 * 85.79913 * 12 10 9 44 44 H 1.09006 * 109.47171 * 290.00154 * 14 13 12 45 45 H 1.08998 * 109.47298 * 50.00126 * 14 13 12 46 46 H 0.97002 * 119.99922 * 0.02562 * 17 15 14 47 47 H 0.97004 * 120.00173 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.91823 * 94.02148 * 26 13 12 49 49 H 1.08997 * 109.91184 * 215.31531 * 26 13 12 50 50 H 1.08995 * 109.47256 * 175.72250 * 29 27 26 51 51 H 1.08997 * 109.47073 * 295.71961 * 29 27 26 52 52 H 1.08998 * 109.46931 * 55.71199 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8005 2.6578 1.1814 6 6 4.7578 2.6852 2.3449 7 8 4.8219 1.7382 3.0998 8 7 5.5428 3.7620 2.5466 9 6 6.4738 3.7884 3.6775 10 6 7.2392 5.1132 3.6771 11 1 6.5485 5.9559 3.7079 12 6 8.1674 5.2099 2.4404 13 7 9.2158 6.1675 2.8763 14 6 10.4258 6.0334 2.0543 15 6 11.3669 7.1711 2.3563 16 8 11.0599 8.0107 3.1760 17 7 12.5500 7.2550 1.7163 18 6 13.4059 8.2903 1.9906 19 1 13.1322 9.0384 2.7199 20 6 14.6254 8.3771 1.3304 21 7 14.9581 7.4672 0.4426 22 14 15.7918 9.7873 1.7047 23 1 16.1636 9.7539 3.1421 24 1 17.0148 9.6521 0.8733 25 1 15.1241 11.0773 1.3960 26 6 9.4972 5.8406 4.2911 27 6 8.2325 5.1714 4.8603 28 1 8.4622 4.1653 5.2112 29 6 7.6531 6.0129 5.9992 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1317 0.0895 34 1 2.6214 1.4026 -0.9313 35 1 2.4772 1.2356 2.1131 36 1 3.7400 0.5066 1.0922 37 1 4.3584 2.7548 0.2500 38 1 3.0960 3.4847 1.2706 39 1 5.4912 4.5196 1.9430 40 1 5.9166 3.6905 4.6092 41 1 7.1786 2.9620 3.5870 42 1 8.6051 4.2384 2.2110 43 1 7.6231 5.6006 1.5806 44 1 10.9160 5.0865 2.2809 45 1 10.1530 6.0579 0.9993 46 1 12.7956 6.5833 1.0610 47 1 15.8094 7.5280 -0.0186 48 1 10.3409 5.1532 4.3527 49 1 9.7166 6.7526 4.8462 50 1 6.7187 5.5678 6.3408 51 1 8.3636 6.0448 6.8251 52 1 7.4645 7.0256 5.6430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102295320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:55 Heat of formation + Delta-G solvation = -71.597154 kcal Electronic energy + Delta-G solvation = -28413.269964 eV Core-core repulsion = 24412.233160 eV Total energy + Delta-G solvation = -4001.036804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.20462 -39.32142 -37.79616 -36.41394 -35.10291 -33.92824 -33.14118 -32.73743 -31.19113 -30.39623 -28.12991 -27.31231 -25.97211 -24.88395 -23.38722 -22.33011 -20.94371 -20.78378 -20.26801 -19.82539 -19.01237 -17.84530 -17.25997 -16.51966 -16.33978 -15.92716 -15.63260 -15.47983 -15.06632 -14.71497 -14.48099 -14.08700 -13.97567 -13.88889 -13.76796 -13.63195 -13.40454 -13.07459 -12.99172 -12.57400 -12.25005 -12.19313 -12.10818 -11.94343 -11.74189 -11.59040 -11.39831 -11.30540 -11.17457 -11.10216 -10.96170 -10.84924 -10.68611 -10.55425 -10.43616 -10.20254 -10.04597 -9.72067 -9.47499 -9.30816 -8.49529 -7.98031 -7.92322 -6.40404 -3.81192 1.88198 2.41170 2.92463 3.20557 3.26095 3.30419 3.92053 3.98860 4.23650 4.33454 4.38568 4.50262 4.55145 4.60165 4.67999 4.80124 4.85929 5.09634 5.09834 5.13232 5.18024 5.19509 5.25059 5.25384 5.30711 5.38409 5.48718 5.49698 5.53139 5.59572 5.69596 5.73104 5.74984 5.80627 5.85180 5.93288 5.97358 6.02599 6.10293 6.19951 6.23481 6.28434 6.29674 6.36767 6.48051 7.16091 7.21577 7.24184 7.55933 7.98190 8.07373 8.63610 9.19621 9.56163 10.08450 10.77384 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.001677 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.681498 B =16693.798404 C =17848.543924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.142 4.142 6 C 0.510 3.490 7 O -0.543 6.543 8 N -0.730 5.730 9 C 0.129 3.871 10 C -0.100 4.100 11 H 0.092 0.908 12 C 0.037 3.963 13 N -0.490 5.490 14 C 0.036 3.964 15 C 0.445 3.555 16 O -0.577 6.577 17 N -0.566 5.566 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.048 3.952 27 C -0.094 4.094 28 H 0.075 0.925 29 C -0.140 4.140 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.402 0.598 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.087 0.913 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.040 0.960 49 H 0.094 0.906 50 H 0.051 0.949 51 H 0.057 0.943 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.733 -12.237 -0.103 26.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.182 4.182 6 C 0.297 3.703 7 O -0.420 6.420 8 N -0.382 5.382 9 C 0.006 3.994 10 C -0.119 4.119 11 H 0.110 0.890 12 C -0.091 4.091 13 N -0.213 5.213 14 C -0.095 4.095 15 C 0.230 3.770 16 O -0.460 6.460 17 N -0.203 5.203 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.080 4.080 27 C -0.114 4.114 28 H 0.093 0.907 29 C -0.198 4.198 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.237 0.763 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.112 0.888 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.855 -11.816 0.832 26.634 hybrid contribution 1.226 -0.238 -0.631 1.400 sum -22.629 -12.054 0.201 25.640 Atomic orbital electron populations 1.23859 0.95990 1.01823 1.01782 1.22967 0.96034 0.98611 0.99322 1.20807 0.98215 0.95514 0.98811 1.21280 0.97705 0.96206 0.98579 1.21711 0.98271 1.00745 0.97479 1.20748 0.80967 0.82124 0.86466 1.90712 1.68388 1.35398 1.47531 1.46081 1.40979 1.19966 1.31170 1.21404 0.91553 0.97309 0.89178 1.22406 0.96896 0.96914 0.95691 0.88974 1.23318 0.93612 0.94868 0.97314 1.64464 1.07664 1.47221 1.01995 1.22080 0.91295 0.97570 0.98588 1.19715 0.83240 0.88342 0.85685 1.90507 1.75892 1.42851 1.36756 1.41852 1.15149 1.25744 1.37578 1.19642 0.96870 1.04152 1.22162 0.88014 1.25241 0.97998 0.98514 0.96154 1.69604 1.23839 1.34763 1.26248 0.85930 0.79038 0.80916 0.78399 1.19945 1.20999 1.19913 1.22973 0.94999 1.00316 0.89686 1.22000 0.94835 0.99604 0.94970 0.90705 1.21817 1.00239 1.00184 0.97548 0.88632 0.88595 0.87358 0.91427 0.90818 0.91096 0.91016 0.88713 0.88831 0.76337 0.91276 0.91448 0.93785 0.90265 0.93268 0.89450 0.77561 0.91873 0.94186 0.88750 0.92969 0.92427 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.15 14.32 29.01 0.42 -0.73 16 2 C -0.15 -0.94 9.52 -36.03 -0.34 -1.28 16 3 C -0.10 -0.53 5.66 -27.88 -0.16 -0.69 16 4 C -0.10 -0.69 4.49 -26.73 -0.12 -0.81 16 5 C -0.14 -0.85 5.70 -27.89 -0.16 -1.01 16 6 C 0.51 4.82 7.83 -10.99 -0.09 4.74 16 7 O -0.54 -7.43 15.98 5.56 0.09 -7.34 16 8 N -0.73 -5.84 5.40 -60.29 -0.33 -6.17 16 9 C 0.13 1.21 4.99 -4.04 -0.02 1.19 16 10 C -0.10 -0.99 2.67 -88.76 -0.24 -1.23 16 11 H 0.09 0.90 7.87 -51.93 -0.41 0.49 16 12 C 0.04 0.43 5.66 -1.90 -0.01 0.42 16 13 N -0.49 -7.85 4.91 -231.89 -1.14 -8.99 16 14 C 0.04 0.64 5.27 -4.98 -0.03 0.62 16 15 C 0.45 10.48 7.61 -10.99 -0.08 10.40 16 16 O -0.58 -15.52 14.87 5.55 0.08 -15.44 16 17 N -0.57 -14.35 5.29 -10.97 -0.06 -14.40 16 18 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 22 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.05 0.74 5.53 -2.75 -0.02 0.72 16 27 C -0.09 -1.07 3.17 -89.26 -0.28 -1.35 16 28 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 29 C -0.14 -1.47 8.89 37.16 0.33 -1.14 16 30 H 0.10 0.49 7.84 -52.48 -0.41 0.08 16 31 H 0.10 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.11 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.07 0.33 7.79 -51.93 -0.40 -0.07 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.40 2.31 8.33 -40.82 -0.34 1.97 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.04 0.50 7.89 -51.93 -0.41 0.09 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.81 7.73 -51.93 -0.40 0.40 16 45 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 46 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.04 0.63 7.52 -51.93 -0.39 0.24 16 49 H 0.09 1.70 7.07 -51.93 -0.37 1.34 16 50 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 423.74 15.07 6.39 6.39 Total: -1.00 -33.41 423.74 -9.58 -42.99 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -9.28 Total: 8.88 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.04 Total: 1.88 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.80 Total: -53.39 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.41 -9.58 -42.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102295320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.606 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds