Wall clock time and date at job start Tue Mar 31 2020 19:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 120.00049 * 2 1 4 4 C 1.53000 * 109.46912 * 124.99542 * 3 2 1 5 5 C 1.52997 * 109.47060 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00115 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46784 * 179.97438 * 9 8 6 11 11 H 1.08998 * 110.63920 * 56.69992 * 10 9 8 12 12 C 1.54933 * 110.72480 * 293.54415 * 10 9 8 13 13 N 1.48537 * 103.22517 * 204.22829 * 12 10 9 14 14 C 1.46897 * 110.99674 * 159.72213 * 13 12 10 15 15 C 1.50703 * 109.47105 * 170.00084 * 14 13 12 16 16 O 1.21289 * 119.99698 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00222 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00307 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99879 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00368 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99923 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47027 * 59.99847 * 22 20 18 24 24 H 1.48497 * 109.47217 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47212 * 300.00316 * 22 20 18 26 26 C 1.47903 * 105.81802 * 39.20981 * 13 12 10 27 27 C 1.53996 * 107.05754 * 334.66722 * 26 13 12 28 28 H 1.09002 * 110.30713 * 120.14379 * 27 26 13 29 29 C 1.53001 * 110.30856 * 242.30927 * 27 26 13 30 30 H 1.08006 * 119.99867 * 0.02562 * 1 2 3 31 31 H 1.07994 * 120.00051 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.99855 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.46980 * 4.99670 * 3 2 1 34 34 H 1.08992 * 109.47158 * 244.99775 * 3 2 1 35 35 H 1.09002 * 109.47398 * 300.00078 * 4 3 2 36 36 H 1.09001 * 109.47194 * 60.00258 * 4 3 2 37 37 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 38 38 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 39 39 H 0.97003 * 119.99640 * 0.02562 * 8 6 5 40 40 H 1.09002 * 109.46801 * 299.99526 * 9 8 6 41 41 H 1.08992 * 109.46823 * 59.99976 * 9 8 6 42 42 H 1.08997 * 110.66613 * 322.66298 * 12 10 9 43 43 H 1.09000 * 110.66377 * 85.79913 * 12 10 9 44 44 H 1.09006 * 109.47171 * 290.00154 * 14 13 12 45 45 H 1.08998 * 109.47298 * 50.00126 * 14 13 12 46 46 H 0.97002 * 119.99922 * 0.02562 * 17 15 14 47 47 H 0.97004 * 120.00173 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.91823 * 94.02148 * 26 13 12 49 49 H 1.08997 * 109.91184 * 215.31531 * 26 13 12 50 50 H 1.08995 * 109.47256 * 175.72250 * 29 27 26 51 51 H 1.08997 * 109.47073 * 295.71961 * 29 27 26 52 52 H 1.08998 * 109.46931 * 55.71199 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8005 2.6578 1.1814 6 6 4.7578 2.6852 2.3449 7 8 4.8219 1.7382 3.0998 8 7 5.5428 3.7620 2.5466 9 6 6.4738 3.7884 3.6775 10 6 7.2392 5.1132 3.6771 11 1 6.5485 5.9559 3.7079 12 6 8.1674 5.2099 2.4404 13 7 9.2158 6.1675 2.8763 14 6 10.4258 6.0334 2.0543 15 6 11.3669 7.1711 2.3563 16 8 11.0599 8.0107 3.1760 17 7 12.5500 7.2550 1.7163 18 6 13.4059 8.2903 1.9906 19 1 13.1322 9.0384 2.7199 20 6 14.6254 8.3771 1.3304 21 7 14.9581 7.4672 0.4426 22 14 15.7918 9.7873 1.7047 23 1 16.1636 9.7539 3.1421 24 1 17.0148 9.6521 0.8733 25 1 15.1241 11.0773 1.3960 26 6 9.4972 5.8406 4.2911 27 6 8.2325 5.1714 4.8603 28 1 8.4622 4.1653 5.2112 29 6 7.6531 6.0129 5.9992 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1317 0.0895 34 1 2.6214 1.4026 -0.9313 35 1 2.4772 1.2356 2.1131 36 1 3.7400 0.5066 1.0922 37 1 4.3584 2.7548 0.2500 38 1 3.0960 3.4847 1.2706 39 1 5.4912 4.5196 1.9430 40 1 5.9166 3.6905 4.6092 41 1 7.1786 2.9620 3.5870 42 1 8.6051 4.2384 2.2110 43 1 7.6231 5.6006 1.5806 44 1 10.9160 5.0865 2.2809 45 1 10.1530 6.0579 0.9993 46 1 12.7956 6.5833 1.0610 47 1 15.8094 7.5280 -0.0186 48 1 10.3409 5.1532 4.3527 49 1 9.7166 6.7526 4.8462 50 1 6.7187 5.5678 6.3408 51 1 8.3636 6.0448 6.8251 52 1 7.4645 7.0256 5.6430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102295320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:54 Heat of formation + Delta-G solvation = -95.089124 kcal Electronic energy + Delta-G solvation = -28414.288652 eV Core-core repulsion = 24412.233160 eV Total energy + Delta-G solvation = -4002.055492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.09472 -40.46937 -39.43522 -36.91556 -36.15903 -35.74784 -34.25675 -33.29931 -33.20372 -31.27185 -29.28899 -28.17596 -26.98722 -26.50255 -24.52150 -23.02361 -21.90393 -21.58536 -21.12759 -20.72949 -20.41362 -19.81221 -17.98412 -17.69832 -17.36041 -16.95632 -16.58664 -16.54850 -16.30886 -15.99404 -15.62788 -15.56199 -15.19788 -14.78824 -14.70366 -14.58466 -14.33909 -14.23213 -13.77653 -13.67606 -13.50495 -13.43036 -13.19755 -12.96040 -12.82449 -12.60593 -12.45689 -12.42815 -12.40197 -12.24228 -12.10661 -11.77295 -11.73737 -11.64973 -11.59545 -11.55021 -11.47178 -10.81942 -10.31986 -10.16705 -10.04825 -9.99918 -9.29657 -8.45657 -5.94344 1.39856 1.41490 1.43707 1.52362 1.71375 2.07205 2.26673 2.28948 2.81333 3.20799 3.37829 3.55722 3.62977 3.83077 3.87660 3.91630 4.10721 4.17418 4.27575 4.31366 4.36060 4.40344 4.41299 4.41868 4.52432 4.59929 4.63103 4.68096 4.69555 4.72087 4.80322 4.84051 4.89078 4.96860 5.04091 5.09630 5.13037 5.18675 5.25133 5.26384 5.40138 5.41140 5.44119 5.52319 5.80641 5.87178 5.92930 5.99349 6.10984 6.61435 6.62074 7.14105 7.32222 7.57785 8.14090 8.71556 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.001677 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.681498 B =16693.798404 C =17848.543924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.090 4.090 4 C -0.097 4.097 5 C -0.134 4.134 6 C 0.506 3.494 7 O -0.592 6.592 8 N -0.719 5.719 9 C 0.138 3.862 10 C -0.083 4.083 11 H 0.100 0.900 12 C 0.039 3.961 13 N -0.511 5.511 14 C 0.049 3.951 15 C 0.441 3.559 16 O -0.615 6.615 17 N -0.576 5.576 18 C -0.334 4.334 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.048 3.952 27 C -0.088 4.088 28 H 0.086 0.914 29 C -0.137 4.137 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.416 0.584 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.029 0.971 49 H 0.058 0.942 50 H 0.073 0.927 51 H 0.053 0.947 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.007 -12.341 -1.301 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.185 4.185 3 C -0.127 4.127 4 C -0.135 4.135 5 C -0.174 4.174 6 C 0.295 3.705 7 O -0.472 6.472 8 N -0.372 5.372 9 C 0.014 3.986 10 C -0.102 4.102 11 H 0.118 0.882 12 C -0.088 4.088 13 N -0.235 5.235 14 C -0.082 4.082 15 C 0.228 3.772 16 O -0.501 6.501 17 N -0.214 5.214 18 C -0.463 4.463 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.080 4.080 27 C -0.108 4.108 28 H 0.104 0.896 29 C -0.194 4.194 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.253 0.747 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.129 0.871 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.048 0.952 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.072 0.928 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.142 -11.916 -0.401 27.826 hybrid contribution 1.586 -0.222 -0.234 1.618 sum -23.556 -12.138 -0.634 26.507 Atomic orbital electron populations 1.24016 0.96000 1.02473 1.01192 1.23110 0.96402 0.99042 0.99899 1.20772 0.98044 0.95433 0.98478 1.21208 0.97534 0.96366 0.98366 1.21742 0.98013 1.00858 0.96772 1.21375 0.81020 0.81437 0.86703 1.90697 1.69898 1.37205 1.49438 1.45989 1.40145 1.20189 1.30841 1.21209 0.91438 0.96270 0.89703 1.22268 0.96326 0.97548 0.94104 0.88205 1.23435 0.92525 0.94298 0.98573 1.64385 1.07644 1.49475 1.02026 1.21929 0.90920 0.95216 1.00167 1.20794 0.83155 0.89095 0.84113 1.90480 1.76660 1.44788 1.38151 1.41927 1.15725 1.25526 1.38178 1.19615 0.98486 1.05154 1.23053 0.90406 1.26007 0.98819 1.00761 0.95575 1.69666 1.24386 1.35753 1.26394 0.85010 0.77264 0.77861 0.78332 1.19801 1.19470 1.19695 1.22887 0.96823 0.98672 0.89652 1.21957 0.93385 0.99787 0.95676 0.89554 1.21781 1.01085 0.99481 0.97085 0.87870 0.88175 0.87707 0.90350 0.89743 0.92994 0.92792 0.86385 0.86344 0.74668 0.91501 0.92471 0.93028 0.88210 0.91693 0.87086 0.77107 0.91347 0.95228 0.92370 0.90843 0.92775 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 14.32 67.77 0.97 -1.12 16 2 C -0.17 -1.90 9.52 25.64 0.24 -1.66 16 3 C -0.09 -0.82 5.66 29.85 0.17 -0.65 16 4 C -0.10 -1.23 4.49 30.59 0.14 -1.09 16 5 C -0.13 -1.24 5.70 29.85 0.17 -1.07 16 6 C 0.51 8.61 7.83 87.66 0.69 9.30 16 7 O -0.59 -15.87 15.98 -3.04 -0.05 -15.92 16 8 N -0.72 -9.57 5.40 -463.05 -2.50 -12.07 16 9 C 0.14 2.28 4.99 86.38 0.43 2.71 16 10 C -0.08 -1.46 2.67 -9.59 -0.03 -1.49 16 11 H 0.10 1.67 7.87 -2.39 -0.02 1.65 16 12 C 0.04 0.80 5.66 86.65 0.49 1.29 16 13 N -0.51 -15.89 4.91 -887.55 -4.36 -20.24 16 14 C 0.05 1.70 5.27 85.56 0.45 2.15 16 15 C 0.44 21.14 7.61 87.66 0.67 21.81 16 16 O -0.62 -34.24 14.87 -3.06 -0.05 -34.29 16 17 N -0.58 -29.75 5.29 -306.99 -1.62 -31.37 16 18 C -0.33 -19.06 9.68 84.04 0.81 -18.24 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 21 N -0.92 -49.81 13.05 21.66 0.28 -49.52 16 22 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 26 C 0.05 1.48 5.53 86.45 0.48 1.96 16 27 C -0.09 -1.90 3.17 -9.92 -0.03 -1.94 16 28 H 0.09 1.69 7.85 -2.39 -0.02 1.67 16 29 C -0.14 -2.74 8.89 71.98 0.64 -2.10 16 30 H 0.10 0.89 7.84 -2.91 -0.02 0.87 16 31 H 0.10 0.91 8.06 -2.91 -0.02 0.89 16 32 H 0.10 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.08 0.56 7.79 -2.39 -0.02 0.54 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 36 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 37 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.42 3.25 8.33 -92.71 -0.77 2.48 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 42 H 0.05 1.02 7.89 -2.39 -0.02 1.00 16 43 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.07 2.05 7.73 -2.38 -0.02 2.03 16 45 H 0.11 3.30 8.08 -2.39 -0.02 3.28 16 46 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 47 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 48 H 0.03 0.95 7.52 -2.38 -0.02 0.93 16 49 H 0.06 2.20 7.07 -2.39 -0.02 2.19 16 50 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -74.82 423.74 -0.11 -74.94 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.61 Total: 33.71 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.76 Total: 9.68 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -8.20 Total: -113.20 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.09 Total: -50.20 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -74.82 -0.11 -74.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102295320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.152 kcal (2) G-P(sol) polarization free energy of solvation -74.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds