Wall clock time and date at job start Tue Mar 31 2020 19:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99938 * 2 1 4 4 C 1.50698 * 120.00058 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.47355 * 266.32195 * 4 2 1 6 6 H 1.09001 * 109.46952 * 304.74764 * 5 4 2 7 7 N 1.46498 * 109.46909 * 64.74438 * 5 4 2 8 8 C 1.34773 * 120.00041 * 267.00436 * 7 5 4 9 9 C 1.50705 * 119.99758 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00190 * 359.97438 * 8 7 5 11 11 C 1.50701 * 109.46887 * 184.74657 * 5 4 2 12 12 O 1.21287 * 119.99665 * 239.99542 * 11 5 4 13 13 N 1.34769 * 120.00040 * 60.00409 * 11 5 4 14 14 C 1.46507 * 119.99955 * 179.97438 * 13 11 5 15 15 C 1.52997 * 109.47189 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.64496 * 54.29819 * 15 14 13 17 17 C 1.54327 * 110.72001 * 291.15507 * 15 14 13 18 18 N 1.47026 * 107.27003 * 219.26718 * 17 15 14 19 19 C 1.36934 * 125.64355 * 178.97941 * 18 17 15 20 20 H 1.08004 * 120.00274 * 342.09529 * 19 18 17 21 21 C 1.38815 * 119.99921 * 162.09619 * 19 18 17 22 22 N 1.31615 * 119.99951 * 351.76157 * 21 19 18 23 23 Si 1.86795 * 120.00016 * 171.75432 * 21 19 18 24 24 H 1.48504 * 109.47044 * 94.96683 * 23 21 19 25 25 H 1.48498 * 109.47195 * 214.96245 * 23 21 19 26 26 H 1.48503 * 109.47490 * 334.96520 * 23 21 19 27 27 C 1.47420 * 108.70502 * 358.93710 * 18 17 15 28 28 C 1.54917 * 104.83026 * 24.13138 * 27 18 17 29 29 H 1.09000 * 111.00040 * 81.06108 * 28 27 18 30 30 C 1.53002 * 111.00303 * 204.91290 * 28 27 18 31 31 H 1.07997 * 119.99771 * 180.02562 * 1 2 3 32 32 H 1.07994 * 119.99774 * 359.97438 * 1 2 3 33 33 H 1.09002 * 109.47062 * 274.81826 * 3 2 1 34 34 H 1.09005 * 109.47519 * 34.81420 * 3 2 1 35 35 H 1.08996 * 109.47674 * 154.81827 * 3 2 1 36 36 H 1.09006 * 109.47147 * 146.32402 * 4 2 1 37 37 H 1.09007 * 109.47088 * 26.32579 * 4 2 1 38 38 H 0.97007 * 119.99635 * 87.00466 * 7 5 4 39 39 H 1.09001 * 109.46922 * 89.99859 * 9 8 7 40 40 H 1.09002 * 109.47173 * 209.99754 * 9 8 7 41 41 H 1.08998 * 109.47436 * 330.00265 * 9 8 7 42 42 H 0.97000 * 120.00456 * 359.97438 * 13 11 5 43 43 H 1.09001 * 109.47372 * 59.99516 * 14 13 11 44 44 H 1.08996 * 109.46830 * 299.99800 * 14 13 11 45 45 H 1.09004 * 109.88258 * 338.68580 * 17 15 14 46 46 H 1.09000 * 109.87812 * 99.84923 * 17 15 14 47 47 H 0.96999 * 120.00214 * 179.97438 * 22 21 19 48 48 H 1.09001 * 110.36493 * 142.96311 * 27 18 17 49 49 H 1.08996 * 110.36861 * 265.29539 * 27 18 17 50 50 H 1.08997 * 109.46946 * 172.19777 * 30 28 27 51 51 H 1.08999 * 109.46934 * 292.19616 * 30 28 27 52 52 H 1.09000 * 109.47221 * 52.19356 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.3987 -1.6999 1.4403 6 1 2.9428 -0.8877 1.9224 7 7 1.1592 -1.9616 2.1760 8 6 0.5738 -0.9746 2.8827 9 6 -0.7010 -1.2441 3.6400 10 8 1.0734 0.1302 2.9101 11 6 3.2516 -2.9423 1.4348 12 8 2.8624 -3.9475 1.9908 13 7 4.4469 -2.9364 0.8122 14 6 5.2763 -4.1441 0.8073 15 6 6.5704 -3.8709 0.0384 16 1 7.0806 -2.9967 0.4430 17 6 6.2829 -3.6873 -1.4667 18 7 7.3699 -4.3495 -2.2027 19 6 7.4766 -4.4314 -3.5654 20 1 6.6108 -4.2551 -4.1865 21 6 8.6977 -4.7410 -4.1485 22 7 9.7850 -4.7963 -3.4089 23 14 8.7977 -5.0795 -5.9828 24 1 9.1737 -3.8327 -6.6965 25 1 9.8217 -6.1241 -6.2384 26 1 7.4771 -5.5508 -6.4720 27 6 8.3262 -4.9097 -1.2306 28 6 7.5019 -5.1114 0.0655 29 1 6.9243 -6.0347 0.0214 30 6 8.4065 -5.0913 1.2993 31 1 -0.5399 -0.9353 0.0004 32 1 -0.5399 0.9353 0.0004 33 1 2.1704 1.6629 -1.0241 34 1 1.5145 2.0417 0.5867 35 1 3.0505 1.1548 0.4372 36 1 2.9859 -1.1924 -0.5693 37 1 1.4475 -2.0805 -0.4548 38 1 0.7598 -2.8454 2.1544 39 1 -0.4603 -1.5765 4.6498 40 1 -1.2940 -0.3309 3.6897 41 1 -1.2706 -2.0198 3.1283 42 1 4.7581 -2.1326 0.3673 43 1 4.7323 -4.9565 0.3255 44 1 5.5151 -4.4249 1.8331 45 1 5.3285 -4.1485 -1.7207 46 1 6.2613 -2.6257 -1.7131 47 1 10.6382 -5.0130 -3.8163 48 1 8.7132 -5.8646 -1.5864 49 1 9.1431 -4.2098 -1.0556 50 1 7.7925 -5.0955 2.1999 51 1 9.0488 -5.9718 1.2933 52 1 9.0224 -4.1921 1.2836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102434028.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:56 Heat of formation + Delta-G solvation = -47.882755 kcal Electronic energy + Delta-G solvation = -30109.107567 eV Core-core repulsion = 26109.099097 eV Total energy + Delta-G solvation = -4000.008470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.68220 -39.27872 -38.05586 -36.63714 -34.87499 -34.19947 -33.01442 -31.32306 -30.77526 -29.59640 -28.55876 -27.38739 -26.06119 -25.38898 -24.39696 -22.73529 -20.95446 -20.58752 -19.93890 -19.38564 -18.80280 -17.76616 -16.97623 -16.78115 -16.21724 -15.82864 -15.47391 -15.18094 -14.96417 -14.68652 -14.54304 -14.21270 -13.95632 -13.76826 -13.64642 -13.23078 -12.99368 -12.96514 -12.82652 -12.70410 -12.62377 -12.23220 -11.91424 -11.85962 -11.66265 -11.63071 -11.58527 -11.29774 -11.20216 -10.84416 -10.80872 -10.32865 -10.12084 -10.09899 -10.04862 -9.96719 -9.79877 -9.65931 -9.53538 -9.09623 -8.94360 -8.61316 -6.76935 -5.79697 -3.15679 2.04238 2.40593 2.51121 2.71945 3.30356 3.36495 3.42727 3.44568 4.33925 4.46094 4.59832 4.67726 4.74493 4.87148 4.91769 5.02156 5.05079 5.11725 5.17075 5.23355 5.30041 5.42797 5.47890 5.52447 5.54118 5.57805 5.66549 5.68885 5.77677 5.79976 5.90352 5.99869 6.03049 6.11851 6.13607 6.20679 6.33254 6.43851 6.49372 6.53407 6.59366 6.71243 6.73743 6.90095 7.27368 7.36526 7.40401 7.60055 7.73664 8.00110 8.04714 8.23859 9.15199 9.77086 10.47238 11.33699 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002544 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.325357 B =11004.707009 C =12243.753513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 C -0.114 4.114 4 C -0.095 4.095 5 C 0.132 3.868 6 H 0.119 0.881 7 N -0.710 5.710 8 C 0.516 3.484 9 C -0.171 4.171 10 O -0.540 6.540 11 C 0.509 3.491 12 O -0.540 6.540 13 N -0.717 5.717 14 C 0.133 3.867 15 C -0.110 4.110 16 H 0.078 0.922 17 C 0.140 3.860 18 N -0.601 5.601 19 C -0.234 4.234 20 H 0.072 0.928 21 C -0.003 4.003 22 N -0.914 5.914 23 Si 0.909 3.091 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.182 3.818 28 C -0.111 4.111 29 H 0.071 0.929 30 C -0.135 4.135 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.408 0.592 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.404 0.596 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.023 0.977 46 H 0.020 0.980 47 H 0.253 0.747 48 H 0.055 0.945 49 H 0.035 0.965 50 H 0.045 0.955 51 H 0.054 0.946 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.241 6.970 12.801 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.105 4.105 3 C -0.170 4.170 4 C -0.134 4.134 5 C 0.022 3.978 6 H 0.136 0.864 7 N -0.364 5.364 8 C 0.303 3.697 9 C -0.231 4.231 10 O -0.416 6.416 11 C 0.293 3.707 12 O -0.418 6.418 13 N -0.368 5.368 14 C 0.010 3.990 15 C -0.129 4.129 16 H 0.097 0.903 17 C 0.014 3.986 18 N -0.327 5.327 19 C -0.362 4.362 20 H 0.090 0.910 21 C -0.200 4.200 22 N -0.560 5.560 23 Si 0.739 3.261 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.057 3.943 28 C -0.132 4.132 29 H 0.089 0.911 30 C -0.193 4.193 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.245 0.755 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.238 0.762 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.053 0.947 50 H 0.064 0.936 51 H 0.073 0.927 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.984 6.983 13.067 22.538 hybrid contribution 0.134 -0.254 -1.249 1.281 sum -16.849 6.729 11.818 21.653 Atomic orbital electron populations 1.23543 0.95272 1.01296 1.03157 1.21451 0.95288 0.94940 0.98828 1.20786 1.00201 0.94566 1.01486 1.21088 1.01839 0.95953 0.94542 1.20747 0.86717 0.96370 0.93928 0.86358 1.45747 1.25232 1.14770 1.50643 1.20712 0.86294 0.84246 0.78425 1.21859 0.95262 1.04630 1.01324 1.90717 1.65267 1.22962 1.62674 1.20558 0.82061 0.89501 0.78574 1.90698 1.72163 1.34210 1.44690 1.46040 1.18874 1.16455 1.55444 1.21485 0.90547 0.86478 1.00535 1.22481 0.94243 0.99739 0.96435 0.90320 1.21359 0.92716 0.95548 0.88926 1.44400 1.24014 1.62472 1.01800 1.18957 0.94058 1.42780 0.80417 0.90974 1.24937 0.95109 1.02034 0.97947 1.69941 0.98123 1.53628 1.34289 0.86158 0.77346 0.77682 0.84895 1.21519 1.21593 1.20526 1.21377 0.90472 0.98275 0.84225 1.22565 0.96843 0.96271 0.97482 0.91076 1.21662 0.99170 1.01870 0.96602 0.89043 0.88728 0.91709 0.91688 0.91950 0.89385 0.90256 0.75531 0.88897 0.88901 0.90226 0.76156 0.91121 0.91501 0.95906 0.96254 0.93653 0.92628 0.94749 0.93581 0.92728 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 12.33 29.01 0.36 -1.46 16 2 C -0.10 -1.01 3.79 -101.07 -0.38 -1.40 16 3 C -0.11 -1.05 10.02 36.00 0.36 -0.69 16 4 C -0.10 -0.88 4.97 -27.88 -0.14 -1.02 16 5 C 0.13 1.31 2.64 -69.08 -0.18 1.13 16 6 H 0.12 1.26 7.33 -51.93 -0.38 0.88 16 7 N -0.71 -6.57 4.59 -54.93 -0.25 -6.82 16 8 C 0.52 4.99 6.35 -10.98 -0.07 4.92 16 9 C -0.17 -1.02 10.30 36.01 0.37 -0.65 16 10 O -0.54 -6.99 15.39 5.56 0.09 -6.90 16 11 C 0.51 6.10 7.22 -10.99 -0.08 6.02 16 12 O -0.54 -8.08 15.96 5.55 0.09 -7.99 16 13 N -0.72 -8.27 5.29 -60.29 -0.32 -8.59 16 14 C 0.13 1.79 5.01 -4.04 -0.02 1.77 16 15 C -0.11 -1.71 2.45 -88.79 -0.22 -1.93 16 16 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 17 C 0.14 2.72 6.64 -3.06 -0.02 2.70 16 18 N -0.60 -14.86 3.39 -170.06 -0.58 -15.44 16 19 C -0.23 -6.40 10.20 -15.06 -0.15 -6.55 16 20 H 0.07 1.93 7.84 -52.48 -0.41 1.52 16 21 C 0.00 -0.08 5.39 -17.43 -0.09 -0.17 16 22 N -0.91 -26.44 10.98 55.49 0.61 -25.83 16 23 Si 0.91 21.75 29.56 -169.99 -5.03 16.72 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.18 4.19 4.82 -2.53 -0.01 4.18 16 28 C -0.11 -1.93 3.09 -88.47 -0.27 -2.20 16 29 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 30 C -0.14 -1.97 9.31 37.16 0.35 -1.63 16 31 H 0.09 0.78 8.00 -52.49 -0.42 0.36 16 32 H 0.09 0.85 8.05 -52.49 -0.42 0.43 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.09 0.75 7.43 -51.93 -0.39 0.36 16 37 H 0.08 0.74 8.01 -51.92 -0.42 0.32 16 38 H 0.41 3.42 8.02 -40.82 -0.33 3.09 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.40 3.98 7.76 -40.82 -0.32 3.67 16 43 H 0.07 1.05 8.00 -51.93 -0.42 0.64 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.02 0.45 7.73 -51.93 -0.40 0.04 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.06 1.44 7.45 -51.93 -0.39 1.05 16 49 H 0.03 0.87 7.74 -51.93 -0.40 0.47 16 50 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 52 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 LS Contribution 418.18 15.07 6.30 6.30 Total: -1.00 -33.09 418.18 -8.59 -41.69 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -9.30 Total: 3.84 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.21 Total: 3.03 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.54 Total: -56.68 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.17 Total: -14.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.09 -8.59 -41.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102434028.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.195 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds