Wall clock time and date at job start Tue Mar 31 2020 19:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99938 * 2 1 4 4 C 1.50698 * 120.00058 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.47355 * 266.32195 * 4 2 1 6 6 H 1.09001 * 109.46952 * 304.74764 * 5 4 2 7 7 N 1.46498 * 109.46909 * 64.74438 * 5 4 2 8 8 C 1.34773 * 120.00041 * 267.00436 * 7 5 4 9 9 C 1.50705 * 119.99758 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00190 * 359.97438 * 8 7 5 11 11 C 1.50701 * 109.46887 * 184.74657 * 5 4 2 12 12 O 1.21287 * 119.99665 * 239.99542 * 11 5 4 13 13 N 1.34769 * 120.00040 * 60.00409 * 11 5 4 14 14 C 1.46507 * 119.99955 * 179.97438 * 13 11 5 15 15 C 1.52997 * 109.47189 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.64496 * 54.29819 * 15 14 13 17 17 C 1.54327 * 110.72001 * 291.15507 * 15 14 13 18 18 N 1.47026 * 107.27003 * 219.26718 * 17 15 14 19 19 C 1.36934 * 125.64355 * 178.97941 * 18 17 15 20 20 H 1.08004 * 120.00274 * 342.09529 * 19 18 17 21 21 C 1.38815 * 119.99921 * 162.09619 * 19 18 17 22 22 N 1.31615 * 119.99951 * 351.76157 * 21 19 18 23 23 Si 1.86795 * 120.00016 * 171.75432 * 21 19 18 24 24 H 1.48504 * 109.47044 * 94.96683 * 23 21 19 25 25 H 1.48498 * 109.47195 * 214.96245 * 23 21 19 26 26 H 1.48503 * 109.47490 * 334.96520 * 23 21 19 27 27 C 1.47420 * 108.70502 * 358.93710 * 18 17 15 28 28 C 1.54917 * 104.83026 * 24.13138 * 27 18 17 29 29 H 1.09000 * 111.00040 * 81.06108 * 28 27 18 30 30 C 1.53002 * 111.00303 * 204.91290 * 28 27 18 31 31 H 1.07997 * 119.99771 * 180.02562 * 1 2 3 32 32 H 1.07994 * 119.99774 * 359.97438 * 1 2 3 33 33 H 1.09002 * 109.47062 * 274.81826 * 3 2 1 34 34 H 1.09005 * 109.47519 * 34.81420 * 3 2 1 35 35 H 1.08996 * 109.47674 * 154.81827 * 3 2 1 36 36 H 1.09006 * 109.47147 * 146.32402 * 4 2 1 37 37 H 1.09007 * 109.47088 * 26.32579 * 4 2 1 38 38 H 0.97007 * 119.99635 * 87.00466 * 7 5 4 39 39 H 1.09001 * 109.46922 * 89.99859 * 9 8 7 40 40 H 1.09002 * 109.47173 * 209.99754 * 9 8 7 41 41 H 1.08998 * 109.47436 * 330.00265 * 9 8 7 42 42 H 0.97000 * 120.00456 * 359.97438 * 13 11 5 43 43 H 1.09001 * 109.47372 * 59.99516 * 14 13 11 44 44 H 1.08996 * 109.46830 * 299.99800 * 14 13 11 45 45 H 1.09004 * 109.88258 * 338.68580 * 17 15 14 46 46 H 1.09000 * 109.87812 * 99.84923 * 17 15 14 47 47 H 0.96999 * 120.00214 * 179.97438 * 22 21 19 48 48 H 1.09001 * 110.36493 * 142.96311 * 27 18 17 49 49 H 1.08996 * 110.36861 * 265.29539 * 27 18 17 50 50 H 1.08997 * 109.46946 * 172.19777 * 30 28 27 51 51 H 1.08999 * 109.46934 * 292.19616 * 30 28 27 52 52 H 1.09000 * 109.47221 * 52.19356 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.3987 -1.6999 1.4403 6 1 2.9428 -0.8877 1.9224 7 7 1.1592 -1.9616 2.1760 8 6 0.5738 -0.9746 2.8827 9 6 -0.7010 -1.2441 3.6400 10 8 1.0734 0.1302 2.9101 11 6 3.2516 -2.9423 1.4348 12 8 2.8624 -3.9475 1.9908 13 7 4.4469 -2.9364 0.8122 14 6 5.2763 -4.1441 0.8073 15 6 6.5704 -3.8709 0.0384 16 1 7.0806 -2.9967 0.4430 17 6 6.2829 -3.6873 -1.4667 18 7 7.3699 -4.3495 -2.2027 19 6 7.4766 -4.4314 -3.5654 20 1 6.6108 -4.2551 -4.1865 21 6 8.6977 -4.7410 -4.1485 22 7 9.7850 -4.7963 -3.4089 23 14 8.7977 -5.0795 -5.9828 24 1 9.1737 -3.8327 -6.6965 25 1 9.8217 -6.1241 -6.2384 26 1 7.4771 -5.5508 -6.4720 27 6 8.3262 -4.9097 -1.2306 28 6 7.5019 -5.1114 0.0655 29 1 6.9243 -6.0347 0.0214 30 6 8.4065 -5.0913 1.2993 31 1 -0.5399 -0.9353 0.0004 32 1 -0.5399 0.9353 0.0004 33 1 2.1704 1.6629 -1.0241 34 1 1.5145 2.0417 0.5867 35 1 3.0505 1.1548 0.4372 36 1 2.9859 -1.1924 -0.5693 37 1 1.4475 -2.0805 -0.4548 38 1 0.7598 -2.8454 2.1544 39 1 -0.4603 -1.5765 4.6498 40 1 -1.2940 -0.3309 3.6897 41 1 -1.2706 -2.0198 3.1283 42 1 4.7581 -2.1326 0.3673 43 1 4.7323 -4.9565 0.3255 44 1 5.5151 -4.4249 1.8331 45 1 5.3285 -4.1485 -1.7207 46 1 6.2613 -2.6257 -1.7131 47 1 10.6382 -5.0130 -3.8163 48 1 8.7132 -5.8646 -1.5864 49 1 9.1431 -4.2098 -1.0556 50 1 7.7925 -5.0955 2.1999 51 1 9.0488 -5.9718 1.2933 52 1 9.0224 -4.1921 1.2836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102434028.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:55 Heat of formation + Delta-G solvation = -69.942188 kcal Electronic energy + Delta-G solvation = -30110.064136 eV Core-core repulsion = 26109.099097 eV Total energy + Delta-G solvation = -4000.965039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57137 -40.26322 -39.47655 -37.42801 -36.13463 -35.01908 -34.69974 -32.54432 -32.13457 -30.73292 -29.37661 -28.13312 -27.78912 -26.75307 -25.47151 -24.21512 -22.01288 -21.46950 -21.43607 -20.72108 -19.56999 -18.88578 -18.50163 -17.81878 -17.13121 -17.04068 -16.57915 -16.29998 -16.04587 -15.96088 -15.61379 -15.38556 -15.20416 -14.75335 -14.67848 -14.48039 -14.28141 -14.01193 -13.79545 -13.56269 -13.45843 -13.36162 -13.25686 -13.09454 -12.86551 -12.77792 -12.61652 -12.59136 -12.46121 -12.40126 -12.06772 -11.94386 -11.86206 -11.62943 -11.39490 -11.39218 -10.96578 -10.87074 -10.66647 -10.33804 -10.12966 -9.70866 -8.77994 -7.89654 -5.27208 1.26424 1.45538 1.46385 1.54961 1.56069 1.70316 1.90707 2.47576 2.49238 3.29665 3.46666 3.65172 3.81175 3.87090 3.91478 3.96826 3.97772 3.99897 4.13154 4.26155 4.38979 4.50771 4.51624 4.61728 4.63117 4.69243 4.75102 4.75673 4.82070 4.84451 4.87854 4.94397 4.99593 5.05121 5.07580 5.11000 5.15672 5.17691 5.33400 5.37708 5.37942 5.47669 5.47982 5.64180 5.77235 5.78690 6.01161 6.22519 6.42817 6.57556 7.08087 7.08789 7.30329 7.76854 8.45426 9.22565 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002544 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.325357 B =11004.707009 C =12243.753513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 C -0.113 4.113 4 C -0.091 4.091 5 C 0.140 3.860 6 H 0.114 0.886 7 N -0.707 5.707 8 C 0.511 3.489 9 C -0.166 4.166 10 O -0.576 6.576 11 C 0.513 3.487 12 O -0.568 6.568 13 N -0.711 5.711 14 C 0.146 3.854 15 C -0.090 4.090 16 H 0.092 0.908 17 C 0.137 3.863 18 N -0.626 5.626 19 C -0.246 4.246 20 H 0.074 0.926 21 C -0.060 4.060 22 N -0.944 5.944 23 Si 0.974 3.026 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.269 1.269 27 C 0.187 3.813 28 C -0.100 4.100 29 H 0.073 0.927 30 C -0.129 4.129 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.414 0.586 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.413 0.587 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.248 0.752 48 H 0.015 0.985 49 H 0.006 0.994 50 H 0.075 0.925 51 H 0.054 0.946 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.005 7.186 13.670 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.116 4.116 3 C -0.170 4.170 4 C -0.130 4.130 5 C 0.031 3.969 6 H 0.132 0.868 7 N -0.360 5.360 8 C 0.300 3.700 9 C -0.225 4.225 10 O -0.455 6.455 11 C 0.299 3.701 12 O -0.447 6.447 13 N -0.362 5.362 14 C 0.022 3.978 15 C -0.109 4.109 16 H 0.110 0.890 17 C 0.012 3.988 18 N -0.352 5.352 19 C -0.375 4.375 20 H 0.092 0.908 21 C -0.254 4.254 22 N -0.592 5.592 23 Si 0.802 3.198 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.194 1.194 27 C 0.062 3.938 28 C -0.120 4.120 29 H 0.091 0.909 30 C -0.186 4.186 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.251 0.749 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.250 0.750 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.057 0.943 48 H 0.034 0.966 49 H 0.024 0.976 50 H 0.094 0.906 51 H 0.073 0.927 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.784 7.208 13.940 24.477 hybrid contribution 0.639 -0.308 -1.519 1.676 sum -18.145 6.900 12.421 23.047 Atomic orbital electron populations 1.23642 0.95270 1.01700 1.02586 1.21546 0.95569 0.95145 0.99332 1.20776 1.00055 0.94338 1.01783 1.21058 1.02182 0.95756 0.93967 1.20626 0.86796 0.94975 0.94544 0.86826 1.45787 1.24827 1.15075 1.50358 1.21373 0.87007 0.83588 0.77998 1.21890 0.93516 1.05587 1.01552 1.90703 1.66473 1.24394 1.63973 1.20810 0.81918 0.89614 0.77745 1.90690 1.72756 1.35377 1.45918 1.45928 1.18660 1.16254 1.55378 1.21222 0.89349 0.86830 1.00417 1.22315 0.95115 0.99319 0.94153 0.88969 1.21525 0.91121 0.95238 0.90884 1.44732 1.25335 1.63440 1.01649 1.19322 0.94150 1.41908 0.82145 0.90778 1.25734 0.94925 1.02602 1.02113 1.70126 0.98329 1.54952 1.35786 0.85149 0.77424 0.77247 0.80019 1.21181 1.22019 1.19395 1.21179 0.90604 0.95316 0.86689 1.22415 0.96694 0.97199 0.95657 0.90905 1.21620 0.99018 1.01868 0.96139 0.88318 0.88687 0.90972 0.92537 0.91897 0.88683 0.90165 0.74879 0.87737 0.88622 0.88028 0.75016 0.92199 0.90434 0.95559 0.95713 0.94262 0.96613 0.97646 0.90568 0.92701 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.35 12.33 67.78 0.84 -2.51 16 2 C -0.12 -2.08 3.79 -16.49 -0.06 -2.15 16 3 C -0.11 -1.99 10.02 71.23 0.71 -1.27 16 4 C -0.09 -1.52 4.97 29.85 0.15 -1.37 16 5 C 0.14 2.57 2.64 44.25 0.12 2.68 16 6 H 0.11 2.27 7.33 -2.39 -0.02 2.25 16 7 N -0.71 -11.87 4.59 -446.10 -2.05 -13.92 16 8 C 0.51 9.09 6.35 87.66 0.56 9.64 16 9 C -0.17 -1.61 10.30 71.24 0.73 -0.87 16 10 O -0.58 -14.39 15.39 -3.03 -0.05 -14.44 16 11 C 0.51 11.30 7.22 87.66 0.63 11.93 16 12 O -0.57 -15.89 15.96 -3.05 -0.05 -15.94 16 13 N -0.71 -14.75 5.29 -463.06 -2.45 -17.20 16 14 C 0.15 3.57 5.01 86.38 0.43 4.01 16 15 C -0.09 -2.63 2.45 -9.61 -0.02 -2.66 16 16 H 0.09 2.51 8.04 -2.39 -0.02 2.49 16 17 C 0.14 5.18 6.64 86.73 0.58 5.76 16 18 N -0.63 -31.31 3.39 -691.96 -2.34 -33.65 16 19 C -0.25 -13.65 10.20 84.03 0.86 -12.79 16 20 H 0.07 3.97 7.84 -2.91 -0.02 3.95 16 21 C -0.06 -3.37 5.39 84.86 0.46 -2.91 16 22 N -0.94 -56.39 10.98 21.65 0.24 -56.15 16 23 Si 0.97 45.33 29.56 68.60 2.03 47.36 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C 0.19 8.88 4.82 86.86 0.42 9.29 16 28 C -0.10 -3.36 3.09 -9.40 -0.03 -3.38 16 29 H 0.07 2.45 8.05 -2.39 -0.02 2.43 16 30 C -0.13 -3.51 9.31 71.98 0.67 -2.84 16 31 H 0.10 1.52 8.00 -2.91 -0.02 1.49 16 32 H 0.09 1.60 8.05 -2.91 -0.02 1.58 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.08 8.10 -2.38 -0.02 1.06 16 35 H 0.06 1.07 8.09 -2.39 -0.02 1.06 16 36 H 0.09 1.44 7.43 -2.38 -0.02 1.42 16 37 H 0.08 1.34 8.01 -2.38 -0.02 1.32 16 38 H 0.41 6.12 8.02 -92.70 -0.74 5.38 16 39 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.41 7.15 7.76 -92.71 -0.72 6.43 16 43 H 0.06 1.65 8.00 -2.39 -0.02 1.63 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.03 0.99 7.73 -2.38 -0.02 0.97 16 46 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 48 H 0.02 0.84 7.45 -2.39 -0.02 0.82 16 49 H 0.01 0.29 7.74 -2.39 -0.02 0.27 16 50 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.05 1.46 8.07 -2.39 -0.02 1.44 16 Total: -1.00 -73.05 418.18 1.80 -71.24 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.56 Total: 22.14 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 7.04 Total: 10.56 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -6.60 Total: -120.92 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.10 Total: -30.38 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -73.05 1.80 -71.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102434028.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.302 kcal (2) G-P(sol) polarization free energy of solvation -73.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds