Wall clock time and date at job start Tue Mar 31 2020 19:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21280 * 119.99900 * 2 1 4 4 N 1.34778 * 119.99945 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99968 * 175.01484 * 4 2 1 6 6 C 1.50702 * 110.01660 * 303.61432 * 5 4 2 7 7 O 1.21279 * 120.00604 * 145.32931 * 6 5 4 8 8 N 1.34781 * 119.99719 * 325.32595 * 6 5 4 9 9 C 1.46500 * 119.99747 * 174.78458 * 8 6 5 10 10 C 1.53010 * 109.46938 * 180.27897 * 9 8 6 11 11 H 1.08997 * 110.63979 * 54.29691 * 10 9 8 12 12 C 1.54324 * 110.71759 * 291.15425 * 10 9 8 13 13 N 1.47018 * 107.27196 * 219.44681 * 12 10 9 14 14 C 1.36929 * 125.64979 * 178.98025 * 13 12 10 15 15 H 1.08004 * 120.00355 * 359.97438 * 14 13 12 16 16 C 1.38820 * 120.00097 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99661 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99972 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46752 * 90.00204 * 18 16 14 20 20 H 1.48494 * 109.47095 * 210.00248 * 18 16 14 21 21 H 1.48495 * 109.47051 * 330.00431 * 18 16 14 22 22 C 1.47428 * 108.70146 * 358.93996 * 13 12 10 23 23 C 1.55117 * 104.94354 * 24.00512 * 22 13 12 24 24 H 1.09004 * 110.93640 * 81.21300 * 23 22 13 25 25 C 1.53002 * 111.16620 * 205.12877 * 23 22 13 26 26 C 1.54263 * 110.03361 * 65.00508 * 5 4 2 27 27 C 1.54957 * 104.16146 * 95.75614 * 26 5 4 28 28 C 1.54888 * 102.77884 * 37.88700 * 27 26 5 29 29 C 1.53877 * 110.03241 * 182.22172 * 5 4 2 30 30 H 1.09005 * 109.46728 * 270.00094 * 1 2 3 31 31 H 1.08997 * 109.46858 * 29.99487 * 1 2 3 32 32 H 1.08997 * 109.47156 * 150.00263 * 1 2 3 33 33 H 0.97003 * 119.99734 * 355.01590 * 4 2 1 34 34 H 0.96998 * 120.00153 * 355.06306 * 8 6 5 35 35 H 1.09001 * 109.47353 * 300.27305 * 9 8 6 36 36 H 1.08995 * 109.47256 * 60.27480 * 9 8 6 37 37 H 1.08999 * 109.88265 * 338.86175 * 12 10 9 38 38 H 1.09000 * 109.88045 * 100.02894 * 12 10 9 39 39 H 0.97001 * 119.99539 * 180.02562 * 17 16 14 40 40 H 1.09000 * 110.36469 * 142.96966 * 22 13 12 41 41 H 1.08998 * 110.36847 * 265.17724 * 22 13 12 42 42 H 1.08994 * 109.47637 * 172.16767 * 25 23 22 43 43 H 1.09003 * 109.46830 * 292.17345 * 25 23 22 44 44 H 1.09004 * 109.46652 * 52.17112 * 25 23 22 45 45 H 1.09004 * 110.48834 * 214.40578 * 26 5 4 46 46 H 1.09001 * 110.48395 * 337.04043 * 26 5 4 47 47 H 1.09007 * 110.71699 * 279.57235 * 27 26 5 48 48 H 1.08996 * 110.76453 * 156.22588 * 27 26 5 49 49 H 1.09005 * 110.48397 * 203.40763 * 28 27 26 50 50 H 1.08998 * 110.48679 * 80.76159 * 28 27 26 51 51 H 1.08996 * 110.03010 * 359.95324 * 29 5 4 52 52 H 1.09005 * 110.03130 * 121.33011 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6417 -1.1696 -0.1108 6 6 4.0661 -0.4379 -1.3581 7 8 5.0890 0.2136 -1.3607 8 7 3.3088 -0.5077 -2.4708 9 6 3.6588 0.2933 -3.6464 10 6 2.6417 0.0358 -4.7602 11 1 1.6273 0.2120 -4.4024 12 6 2.7855 -1.3990 -5.3098 13 7 2.6058 -1.3283 -6.7672 14 6 2.6785 -2.3869 -7.6326 15 1 2.8839 -3.3785 -7.2570 16 6 2.4882 -2.1858 -8.9929 17 7 2.2384 -0.9774 -9.4508 18 14 2.5881 -3.6300 -10.1736 19 1 1.2418 -4.2374 -10.3277 20 1 3.0716 -3.1562 -11.4953 21 1 3.5302 -4.6443 -9.6363 22 6 2.3333 0.0712 -7.1425 23 6 2.9483 0.9191 -5.9984 24 1 4.0229 1.0388 -6.1366 25 6 2.2572 2.2796 -5.8863 26 6 4.2666 -0.5021 1.1317 27 6 4.6076 -1.6886 2.0683 28 6 5.0913 -2.7778 1.0791 29 6 4.1655 -2.6161 -0.1442 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6986 -2.0057 0.0721 34 1 2.5297 -1.0852 -2.4918 35 1 3.6480 1.3507 -3.3820 36 1 4.6544 0.0154 -3.9921 37 1 3.7769 -1.7876 -5.0770 38 1 2.0211 -2.0416 -4.8728 39 1 2.1050 -0.8369 -10.4013 40 1 2.8124 0.3094 -8.0922 41 1 1.2591 0.2446 -7.2065 42 1 2.6114 2.7945 -4.9933 43 1 2.4888 2.8784 -6.7671 44 1 1.1790 2.1348 -5.8185 45 1 5.1716 0.0406 0.8588 46 1 3.5488 0.1663 1.6072 47 1 3.7204 -2.0222 2.6067 48 1 5.4025 -1.4167 2.7626 49 1 4.9753 -3.7694 1.5169 50 1 6.1297 -2.6032 0.7974 51 1 3.3328 -3.3162 -0.0775 52 1 4.7259 -2.7892 -1.0630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102461171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:46 Heat of formation + Delta-G solvation = -61.882235 kcal Electronic energy + Delta-G solvation = -31077.540970 eV Core-core repulsion = 27076.925436 eV Total energy + Delta-G solvation = -4000.615533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.11605 -38.99980 -38.14352 -37.22152 -34.71921 -33.88983 -32.87032 -30.75591 -30.59645 -29.38581 -28.93413 -27.68888 -25.97970 -25.06752 -23.09245 -21.91463 -21.71848 -20.57238 -19.86711 -19.78985 -19.05816 -17.84192 -17.12961 -16.78383 -16.26091 -15.76959 -15.57375 -15.24839 -15.02900 -14.65000 -14.30408 -14.05225 -13.82565 -13.64552 -13.45343 -13.11203 -13.01028 -12.69844 -12.69285 -12.55595 -12.23329 -11.88409 -11.87239 -11.56472 -11.54440 -11.50093 -11.40424 -11.25071 -11.12684 -10.89252 -10.86678 -10.80912 -10.29444 -10.15161 -10.01614 -9.99591 -9.89339 -9.78856 -9.44858 -9.09222 -8.85368 -8.65948 -6.84152 -5.66099 -3.07995 2.36836 2.58703 2.94404 3.28668 3.38490 3.43448 3.45707 4.18885 4.24146 4.47152 4.55608 4.56832 4.87494 4.95674 5.07559 5.09576 5.13700 5.18118 5.19147 5.29001 5.33287 5.35573 5.46049 5.49737 5.54582 5.60561 5.62422 5.72074 5.75737 5.79869 5.90771 5.95544 6.10125 6.11392 6.18159 6.22191 6.23986 6.29520 6.51547 6.55623 6.60519 6.64407 6.82228 6.96048 7.16684 7.53549 7.61689 7.62276 7.86359 7.96544 8.31839 8.35910 9.21209 9.82099 10.47417 11.37509 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.002933 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.170436 B = 9542.807118 C =10280.287440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.526 6.526 4 N -0.726 5.726 5 C 0.156 3.844 6 C 0.523 3.477 7 O -0.535 6.535 8 N -0.718 5.718 9 C 0.134 3.866 10 C -0.108 4.108 11 H 0.074 0.926 12 C 0.143 3.857 13 N -0.604 5.604 14 C -0.223 4.223 15 H 0.076 0.924 16 C -0.011 4.011 17 N -0.921 5.921 18 Si 0.914 3.086 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.160 3.840 23 C -0.111 4.111 24 H 0.071 0.929 25 C -0.134 4.134 26 C -0.117 4.117 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.120 4.120 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.403 0.597 34 H 0.397 0.603 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.023 0.977 38 H 0.016 0.984 39 H 0.252 0.748 40 H 0.106 0.894 41 H 0.012 0.988 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.081 0.919 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 -1.730 22.897 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.401 6.401 4 N -0.382 5.382 5 C 0.067 3.933 6 C 0.307 3.693 7 O -0.410 6.410 8 N -0.369 5.369 9 C 0.010 3.990 10 C -0.127 4.127 11 H 0.092 0.908 12 C 0.017 3.983 13 N -0.330 5.330 14 C -0.352 4.352 15 H 0.094 0.906 16 C -0.207 4.207 17 N -0.570 5.570 18 Si 0.745 3.255 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.035 3.965 23 C -0.131 4.131 24 H 0.089 0.911 25 C -0.192 4.192 26 C -0.156 4.156 27 C -0.161 4.161 28 C -0.159 4.159 29 C -0.158 4.158 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.239 0.761 34 H 0.231 0.769 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.124 0.876 41 H 0.030 0.970 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.091 0.909 51 H 0.100 0.900 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.971 -0.511 22.609 22.636 hybrid contribution -0.809 -1.500 -0.654 1.826 sum -1.780 -2.011 21.955 22.119 Atomic orbital electron populations 1.21905 0.91335 1.05336 1.04704 1.20927 0.90726 0.83521 0.75387 1.90793 1.70493 1.31182 1.47661 1.46378 1.06117 1.09379 1.76346 1.21227 0.80734 0.96873 0.94504 1.20391 0.83800 0.80853 0.84274 1.90673 1.24848 1.41495 1.84024 1.45941 1.30649 1.46482 1.13802 1.21438 0.98789 0.94898 0.83826 1.22473 0.97985 0.97768 0.94512 0.90787 1.21309 0.97454 0.92936 0.86594 1.44478 1.83548 1.04926 1.00038 1.19064 1.41211 0.87396 0.87492 0.90586 1.24792 1.02097 0.96943 0.96821 1.69801 1.55265 1.18990 1.12904 0.86078 0.77620 0.81240 0.80591 1.21664 1.21631 1.20718 1.22008 0.96649 0.81606 0.96205 1.22629 1.00295 0.94259 0.95933 0.91069 1.21641 1.00207 0.96591 1.00728 1.22669 1.02261 0.97647 0.92981 1.22531 1.00927 0.95191 0.97427 1.22353 0.99626 0.99228 0.94729 1.22396 1.00311 0.92475 1.00626 0.88929 0.88633 0.89922 0.76078 0.76920 0.91745 0.91369 0.95884 0.96649 0.93722 0.87634 0.96967 0.93621 0.92658 0.93016 0.88831 0.90365 0.91546 0.91040 0.90970 0.90851 0.90004 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.31 36.01 0.37 -0.72 16 2 C 0.51 5.16 6.90 -10.98 -0.08 5.09 16 3 O -0.53 -8.01 14.87 5.56 0.08 -7.93 16 4 N -0.73 -5.84 4.49 -47.64 -0.21 -6.06 16 5 C 0.16 1.66 0.86 -131.85 -0.11 1.54 16 6 C 0.52 7.79 5.09 -10.98 -0.06 7.74 16 7 O -0.53 -10.05 15.58 5.56 0.09 -9.96 16 8 N -0.72 -10.18 5.03 -60.29 -0.30 -10.48 16 9 C 0.13 2.17 5.01 -4.04 -0.02 2.15 16 10 C -0.11 -1.87 2.45 -88.78 -0.22 -2.09 16 11 H 0.07 1.22 8.04 -51.93 -0.42 0.81 16 12 C 0.14 2.92 6.64 -3.07 -0.02 2.90 16 13 N -0.60 -15.38 3.40 -169.94 -0.58 -15.96 16 14 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 15 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 17 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 18 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.16 3.86 5.37 -2.41 -0.01 3.85 16 23 C -0.11 -2.11 3.10 -88.36 -0.27 -2.38 16 24 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 25 C -0.13 -2.17 9.32 37.16 0.35 -1.82 16 26 C -0.12 -1.30 5.55 -25.04 -0.14 -1.44 16 27 C -0.12 -0.96 6.91 -24.70 -0.17 -1.13 16 28 C -0.12 -0.90 6.83 -25.08 -0.17 -1.07 16 29 C -0.12 -0.98 6.24 -25.61 -0.16 -1.14 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.40 1.84 8.08 -40.82 -0.33 1.51 16 34 H 0.40 4.84 7.87 -40.82 -0.32 4.52 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 37 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 41 H 0.01 0.32 7.99 -51.93 -0.41 -0.10 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 45 H 0.09 1.28 6.80 -51.93 -0.35 0.92 16 46 H 0.08 0.96 6.63 -51.93 -0.34 0.61 16 47 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.08 0.46 7.45 -51.93 -0.39 0.07 16 52 H 0.08 0.78 7.67 -51.93 -0.40 0.39 16 LS Contribution 404.59 15.07 6.10 6.10 Total: -1.00 -35.14 404.59 -9.38 -44.51 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -9.12 Total: 4.33 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -0.96 Total: 4.72 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.53 Total: -58.70 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.17 Total: -17.89 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.14 -9.38 -44.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102461171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.371 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds