Wall clock time and date at job start Tue Mar 31 2020 19:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21280 * 119.99900 * 2 1 4 4 N 1.34778 * 119.99945 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99968 * 175.01484 * 4 2 1 6 6 C 1.50702 * 110.01660 * 303.61432 * 5 4 2 7 7 O 1.21279 * 120.00604 * 145.32931 * 6 5 4 8 8 N 1.34781 * 119.99719 * 325.32595 * 6 5 4 9 9 C 1.46500 * 119.99747 * 174.78458 * 8 6 5 10 10 C 1.53010 * 109.46938 * 180.27897 * 9 8 6 11 11 H 1.08997 * 110.63979 * 54.29691 * 10 9 8 12 12 C 1.54324 * 110.71759 * 291.15425 * 10 9 8 13 13 N 1.47018 * 107.27196 * 219.44681 * 12 10 9 14 14 C 1.36929 * 125.64979 * 178.98025 * 13 12 10 15 15 H 1.08004 * 120.00355 * 359.97438 * 14 13 12 16 16 C 1.38820 * 120.00097 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99661 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99972 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46752 * 90.00204 * 18 16 14 20 20 H 1.48494 * 109.47095 * 210.00248 * 18 16 14 21 21 H 1.48495 * 109.47051 * 330.00431 * 18 16 14 22 22 C 1.47428 * 108.70146 * 358.93996 * 13 12 10 23 23 C 1.55117 * 104.94354 * 24.00512 * 22 13 12 24 24 H 1.09004 * 110.93640 * 81.21300 * 23 22 13 25 25 C 1.53002 * 111.16620 * 205.12877 * 23 22 13 26 26 C 1.54263 * 110.03361 * 65.00508 * 5 4 2 27 27 C 1.54957 * 104.16146 * 95.75614 * 26 5 4 28 28 C 1.54888 * 102.77884 * 37.88700 * 27 26 5 29 29 C 1.53877 * 110.03241 * 182.22172 * 5 4 2 30 30 H 1.09005 * 109.46728 * 270.00094 * 1 2 3 31 31 H 1.08997 * 109.46858 * 29.99487 * 1 2 3 32 32 H 1.08997 * 109.47156 * 150.00263 * 1 2 3 33 33 H 0.97003 * 119.99734 * 355.01590 * 4 2 1 34 34 H 0.96998 * 120.00153 * 355.06306 * 8 6 5 35 35 H 1.09001 * 109.47353 * 300.27305 * 9 8 6 36 36 H 1.08995 * 109.47256 * 60.27480 * 9 8 6 37 37 H 1.08999 * 109.88265 * 338.86175 * 12 10 9 38 38 H 1.09000 * 109.88045 * 100.02894 * 12 10 9 39 39 H 0.97001 * 119.99539 * 180.02562 * 17 16 14 40 40 H 1.09000 * 110.36469 * 142.96966 * 22 13 12 41 41 H 1.08998 * 110.36847 * 265.17724 * 22 13 12 42 42 H 1.08994 * 109.47637 * 172.16767 * 25 23 22 43 43 H 1.09003 * 109.46830 * 292.17345 * 25 23 22 44 44 H 1.09004 * 109.46652 * 52.17112 * 25 23 22 45 45 H 1.09004 * 110.48834 * 214.40578 * 26 5 4 46 46 H 1.09001 * 110.48395 * 337.04043 * 26 5 4 47 47 H 1.09007 * 110.71699 * 279.57235 * 27 26 5 48 48 H 1.08996 * 110.76453 * 156.22588 * 27 26 5 49 49 H 1.09005 * 110.48397 * 203.40763 * 28 27 26 50 50 H 1.08998 * 110.48679 * 80.76159 * 28 27 26 51 51 H 1.08996 * 110.03010 * 359.95324 * 29 5 4 52 52 H 1.09005 * 110.03130 * 121.33011 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6417 -1.1696 -0.1108 6 6 4.0661 -0.4379 -1.3581 7 8 5.0890 0.2136 -1.3607 8 7 3.3088 -0.5077 -2.4708 9 6 3.6588 0.2933 -3.6464 10 6 2.6417 0.0358 -4.7602 11 1 1.6273 0.2120 -4.4024 12 6 2.7855 -1.3990 -5.3098 13 7 2.6058 -1.3283 -6.7672 14 6 2.6785 -2.3869 -7.6326 15 1 2.8839 -3.3785 -7.2570 16 6 2.4882 -2.1858 -8.9929 17 7 2.2384 -0.9774 -9.4508 18 14 2.5881 -3.6300 -10.1736 19 1 1.2418 -4.2374 -10.3277 20 1 3.0716 -3.1562 -11.4953 21 1 3.5302 -4.6443 -9.6363 22 6 2.3333 0.0712 -7.1425 23 6 2.9483 0.9191 -5.9984 24 1 4.0229 1.0388 -6.1366 25 6 2.2572 2.2796 -5.8863 26 6 4.2666 -0.5021 1.1317 27 6 4.6076 -1.6886 2.0683 28 6 5.0913 -2.7778 1.0791 29 6 4.1655 -2.6161 -0.1442 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6986 -2.0057 0.0721 34 1 2.5297 -1.0852 -2.4918 35 1 3.6480 1.3507 -3.3820 36 1 4.6544 0.0154 -3.9921 37 1 3.7769 -1.7876 -5.0770 38 1 2.0211 -2.0416 -4.8728 39 1 2.1050 -0.8369 -10.4013 40 1 2.8124 0.3094 -8.0922 41 1 1.2591 0.2446 -7.2065 42 1 2.6114 2.7945 -4.9933 43 1 2.4888 2.8784 -6.7671 44 1 1.1790 2.1348 -5.8185 45 1 5.1716 0.0406 0.8588 46 1 3.5488 0.1663 1.6072 47 1 3.7204 -2.0222 2.6067 48 1 5.4025 -1.4167 2.7626 49 1 4.9753 -3.7694 1.5169 50 1 6.1297 -2.6032 0.7974 51 1 3.3328 -3.3162 -0.0775 52 1 4.7259 -2.7892 -1.0630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102461171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:45 Heat of formation + Delta-G solvation = -86.686994 kcal Electronic energy + Delta-G solvation = -31078.616585 eV Core-core repulsion = 27076.925436 eV Total energy + Delta-G solvation = -4001.691148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.06404 -40.17920 -39.54903 -38.21976 -36.15738 -34.94717 -34.43985 -32.58459 -31.43936 -30.57980 -29.79479 -28.52147 -27.80606 -26.62749 -24.68085 -23.06320 -22.50504 -21.56612 -21.39937 -21.04099 -20.28118 -19.00832 -18.66334 -17.88117 -17.34337 -17.01051 -16.75851 -16.42071 -16.10173 -15.96039 -15.60820 -15.47388 -15.19797 -14.73311 -14.62144 -14.37344 -14.14468 -14.08584 -13.58590 -13.55833 -13.41986 -13.20415 -13.06116 -12.92612 -12.77482 -12.71130 -12.69040 -12.50818 -12.34841 -12.13703 -11.98123 -11.94891 -11.85631 -11.68067 -11.55234 -11.45819 -11.32428 -11.08455 -10.86047 -10.74359 -10.14510 -10.08338 -8.88725 -7.76987 -5.21692 1.45705 1.46740 1.48672 1.57333 1.64815 2.05408 2.25951 2.49464 3.32240 3.41975 3.44963 3.58438 3.70063 3.79084 3.85874 3.93546 3.94040 4.19778 4.31735 4.35634 4.41216 4.44243 4.48428 4.55456 4.56619 4.68618 4.70213 4.70958 4.73818 4.77371 4.80279 4.93703 4.94495 5.04483 5.05111 5.10972 5.15516 5.18121 5.20371 5.30178 5.34479 5.38405 5.42611 5.46899 5.49428 5.68659 5.83083 6.30887 6.44147 6.57829 7.10746 7.15653 7.27421 7.78281 8.42547 9.24720 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.002933 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.170436 B = 9542.807118 C =10280.287440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.502 3.498 3 O -0.584 6.584 4 N -0.707 5.707 5 C 0.161 3.839 6 C 0.515 3.485 7 O -0.582 6.582 8 N -0.711 5.711 9 C 0.147 3.853 10 C -0.087 4.087 11 H 0.091 0.909 12 C 0.143 3.857 13 N -0.627 5.627 14 C -0.239 4.239 15 H 0.082 0.918 16 C -0.067 4.067 17 N -0.948 5.948 18 Si 0.980 3.020 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.270 1.270 22 C 0.166 3.834 23 C -0.102 4.102 24 H 0.062 0.938 25 C -0.127 4.127 26 C -0.118 4.118 27 C -0.113 4.113 28 C -0.119 4.119 29 C -0.117 4.117 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.425 0.575 34 H 0.409 0.591 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.019 0.981 38 H 0.032 0.968 39 H 0.247 0.753 40 H 0.069 0.931 41 H -0.008 1.008 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.100 0.900 50 H 0.058 0.942 51 H 0.119 0.881 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 -3.997 24.984 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.291 3.709 3 O -0.463 6.463 4 N -0.365 5.365 5 C 0.071 3.929 6 C 0.301 3.699 7 O -0.461 6.461 8 N -0.361 5.361 9 C 0.022 3.978 10 C -0.106 4.106 11 H 0.110 0.890 12 C 0.018 3.982 13 N -0.353 5.353 14 C -0.368 4.368 15 H 0.099 0.901 16 C -0.260 4.260 17 N -0.598 5.598 18 Si 0.809 3.191 19 H -0.211 1.211 20 H -0.222 1.222 21 H -0.195 1.195 22 C 0.040 3.960 23 C -0.123 4.123 24 H 0.081 0.919 25 C -0.184 4.184 26 C -0.157 4.157 27 C -0.150 4.150 28 C -0.157 4.157 29 C -0.155 4.155 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.265 0.735 34 H 0.245 0.755 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.010 0.990 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.119 0.881 50 H 0.077 0.923 51 H 0.137 0.863 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.552 -2.846 24.735 25.029 hybrid contribution -0.308 -0.775 -1.284 1.530 sum -2.860 -3.621 23.451 23.901 Atomic orbital electron populations 1.21927 0.87952 1.06238 1.06381 1.21708 0.92315 0.82955 0.73937 1.90783 1.71859 1.33305 1.50354 1.46221 1.04948 1.10107 1.75199 1.21121 0.82293 0.97801 0.91735 1.21246 0.82995 0.80238 0.85379 1.90648 1.26958 1.43589 1.84866 1.45827 1.30970 1.46240 1.13111 1.21123 0.97496 0.94926 0.84220 1.22288 0.99107 0.95319 0.93861 0.89032 1.21439 0.97523 0.95068 0.84219 1.44785 1.83540 1.04932 1.02047 1.19454 1.40696 0.88359 0.88305 0.90060 1.25644 1.02383 0.99481 0.98478 1.70062 1.56266 1.20813 1.12669 0.85049 0.77756 0.78395 0.77950 1.21140 1.22184 1.19460 1.21755 0.95245 0.82325 0.96630 1.22480 0.99691 0.95396 0.94704 0.91915 1.21583 1.00202 0.94809 1.01817 1.22603 1.00375 0.98682 0.94085 1.22511 1.02031 0.93557 0.96930 1.22368 0.98594 1.00474 0.94238 1.22460 1.01555 0.91127 1.00345 0.86788 0.89665 0.87023 0.73482 0.75481 0.92261 0.93139 0.96326 0.94970 0.94372 0.91341 0.98970 0.91608 0.92474 0.92482 0.92320 0.91814 0.89324 0.90639 0.88103 0.92315 0.86299 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 10.31 71.24 0.73 -0.84 16 2 C 0.50 9.28 6.90 87.66 0.60 9.88 16 3 O -0.58 -17.74 14.87 -3.03 -0.05 -17.79 16 4 N -0.71 -9.48 4.49 -423.02 -1.90 -11.38 16 5 C 0.16 3.21 0.86 3.58 0.00 3.21 16 6 C 0.52 15.38 5.09 87.66 0.45 15.83 16 7 O -0.58 -22.79 15.58 -3.03 -0.05 -22.84 16 8 N -0.71 -19.53 5.03 -463.04 -2.33 -21.86 16 9 C 0.15 4.72 5.01 86.38 0.43 5.15 16 10 C -0.09 -2.91 2.45 -9.60 -0.02 -2.93 16 11 H 0.09 2.81 8.04 -2.39 -0.02 2.79 16 12 C 0.14 5.70 6.64 86.73 0.58 6.28 16 13 N -0.63 -32.19 3.40 -691.57 -2.35 -34.54 16 14 C -0.24 -13.35 10.27 84.04 0.86 -12.49 16 15 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 16 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 17 N -0.95 -56.60 10.09 21.65 0.22 -56.38 16 18 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 C 0.17 8.18 5.37 86.93 0.47 8.64 16 23 C -0.10 -3.90 3.10 -9.33 -0.03 -3.93 16 24 H 0.06 2.49 8.05 -2.39 -0.02 2.47 16 25 C -0.13 -3.97 9.32 71.98 0.67 -3.30 16 26 C -0.12 -2.63 5.55 31.69 0.18 -2.45 16 27 C -0.11 -1.51 6.91 31.91 0.22 -1.29 16 28 C -0.12 -1.45 6.83 31.67 0.22 -1.24 16 29 C -0.12 -1.61 6.24 31.32 0.20 -1.41 16 30 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.43 1.99 8.08 -92.71 -0.75 1.24 16 34 H 0.41 9.08 7.87 -92.71 -0.73 8.35 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 1.82 8.00 -2.39 -0.02 1.80 16 37 H 0.02 0.77 7.73 -2.39 -0.02 0.75 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.07 3.92 5.87 -2.39 -0.01 3.90 16 41 H -0.01 -0.40 7.99 -2.39 -0.02 -0.42 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 1.73 8.08 -2.38 -0.02 1.71 16 45 H 0.06 1.71 6.80 -2.38 -0.02 1.69 16 46 H 0.06 1.58 6.63 -2.39 -0.02 1.56 16 47 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 50 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.12 0.75 7.45 -2.39 -0.02 0.73 16 52 H 0.07 1.16 7.67 -2.38 -0.02 1.14 16 Total: -1.00 -81.40 404.59 1.03 -80.37 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -0.56 Total: 21.23 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 6.02 Total: 15.75 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -6.36 Total: -124.16 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.09 Total: -40.62 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -81.40 1.03 -80.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102461171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.321 kcal (2) G-P(sol) polarization free energy of solvation -81.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds