Wall clock time and date at job start Tue Mar 31 2020 19:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21288 * 119.99903 * 2 1 4 4 N 1.34776 * 120.00350 * 179.97438 * 2 1 3 5 5 C 1.48115 * 127.03100 * 359.95818 * 4 2 1 6 6 C 1.54942 * 103.25429 * 140.74329 * 5 4 2 7 7 C 1.54617 * 102.83849 * 37.37768 * 6 5 4 8 8 C 1.52994 * 110.41617 * 97.08622 * 7 6 5 9 9 C 1.50694 * 110.32445 * 219.25788 * 7 6 5 10 10 O 1.21283 * 120.00363 * 357.07287 * 9 7 6 11 11 N 1.34784 * 119.99988 * 177.07405 * 9 7 6 12 12 C 1.46493 * 119.99864 * 179.72721 * 11 9 7 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 H 1.08992 * 110.64639 * 56.68321 * 13 12 11 15 15 C 1.54330 * 110.71799 * 293.54460 * 13 12 11 16 16 N 1.47022 * 107.27027 * 219.44650 * 15 13 12 17 17 C 1.36931 * 125.64764 * 178.90446 * 16 15 13 18 18 H 1.08008 * 120.00050 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00076 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00032 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00041 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47556 * 90.00020 * 21 19 17 23 23 H 1.48504 * 109.46879 * 210.00103 * 21 19 17 24 24 H 1.48506 * 109.47209 * 329.99708 * 21 19 17 25 25 C 1.47424 * 108.70417 * 358.93865 * 16 15 13 26 26 C 1.54903 * 104.83178 * 24.12832 * 25 16 15 27 27 H 1.09003 * 111.00524 * 81.07064 * 26 25 16 28 28 C 1.53001 * 111.00446 * 204.91426 * 26 25 16 29 29 C 1.47480 * 127.03403 * 180.02562 * 4 2 1 30 30 H 1.09008 * 109.47221 * 240.00132 * 1 2 3 31 31 H 1.09001 * 109.47818 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47122 * 120.00302 * 1 2 3 33 33 H 1.09005 * 110.66222 * 259.18763 * 5 4 2 34 34 H 1.09001 * 110.66502 * 22.12973 * 5 4 2 35 35 H 1.08992 * 110.73913 * 279.03371 * 6 5 4 36 36 H 1.09006 * 110.73691 * 155.71299 * 6 5 4 37 37 H 1.08997 * 109.47575 * 181.49300 * 8 7 6 38 38 H 1.09001 * 109.47463 * 301.49420 * 8 7 6 39 39 H 1.09004 * 109.47621 * 61.48789 * 8 7 6 40 40 H 0.97000 * 119.99339 * 0.02562 * 11 9 7 41 41 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 42 42 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 43 43 H 1.09002 * 109.88037 * 338.85787 * 15 13 12 44 44 H 1.08991 * 109.88492 * 99.87092 * 15 13 12 45 45 H 0.96994 * 119.99994 * 180.02562 * 20 19 17 46 46 H 1.08997 * 110.36667 * 142.97370 * 25 16 15 47 47 H 1.09004 * 110.36226 * 265.29598 * 25 16 15 48 48 H 1.09003 * 109.47028 * 172.19938 * 28 26 25 49 49 H 1.08995 * 109.47524 * 292.20134 * 28 26 25 50 50 H 1.09003 * 109.47187 * 52.20129 * 28 26 25 51 51 H 1.09000 * 109.91604 * 86.05254 * 29 4 2 52 52 H 1.09000 * 110.07437 * 324.85856 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.6030 -2.5309 0.0020 6 6 2.5390 -3.3144 -0.9523 7 6 3.9309 -2.7230 -0.6305 8 6 4.6748 -3.6187 0.3620 9 6 4.7360 -2.5618 -1.8940 10 8 4.2803 -2.9328 -2.9550 11 7 5.9627 -2.0054 -1.8452 12 6 6.7478 -1.8542 -3.0727 13 6 8.0909 -1.2005 -2.7417 14 1 8.6276 -1.7828 -1.9928 15 6 7.8876 0.2519 -2.2612 16 7 8.9689 1.0599 -2.8438 17 6 9.1359 2.4087 -2.6773 18 1 8.4366 2.9690 -2.0743 19 6 10.2038 3.0560 -3.2836 20 7 11.0562 2.3731 -4.0181 21 14 10.4319 4.8960 -3.0559 22 1 11.2797 5.1458 -1.8626 23 1 11.0902 5.4658 -4.2589 24 1 9.1070 5.5392 -2.8653 25 6 9.8433 0.1774 -3.6377 26 6 8.9472 -1.0257 -4.0237 27 1 8.3203 -0.7862 -4.8827 28 6 9.7906 -2.2732 -4.2942 29 6 3.6446 -1.3477 0.0011 30 1 -0.3634 -0.5138 0.8901 31 1 -0.3635 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6297 -2.9589 1.0042 34 1 0.5828 -2.5168 -0.3816 35 1 2.2721 -3.1293 -1.9927 36 1 2.5120 -4.3812 -0.7297 37 1 5.6417 -3.1746 0.5983 38 1 4.0871 -3.7162 1.2748 39 1 4.8256 -4.6038 -0.0797 40 1 6.3273 -1.7091 -0.9965 41 1 6.9209 -2.8347 -3.5164 42 1 6.2022 -1.2274 -3.7781 43 1 6.9217 0.6237 -2.6032 44 1 7.9362 0.2927 -1.1732 45 1 11.8025 2.8254 -4.4414 46 1 10.1916 0.6936 -4.5323 47 1 10.6898 -0.1571 -3.0379 48 1 9.1346 -3.1336 -4.4267 49 1 10.3809 -2.1238 -5.1983 50 1 10.4572 -2.4511 -3.4504 51 1 4.0214 -1.3229 1.0237 52 1 4.1186 -0.5627 -0.5881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102499269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:56 Heat of formation + Delta-G solvation = -53.560931 kcal Electronic energy + Delta-G solvation = -30463.121080 eV Core-core repulsion = 26462.866386 eV Total energy + Delta-G solvation = -4000.254694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.97502 -39.45994 -38.17118 -37.29589 -34.74350 -33.52260 -32.84675 -30.74341 -30.25185 -30.11795 -28.96519 -26.65657 -26.00326 -25.17184 -24.21182 -23.06528 -21.90976 -19.95754 -19.84186 -19.67268 -18.99509 -17.61247 -16.85739 -16.64719 -16.45115 -15.83100 -15.65570 -15.42654 -14.95465 -14.52426 -14.16938 -14.13162 -13.80402 -13.64599 -13.26733 -13.19029 -12.98487 -12.88422 -12.69645 -12.65100 -12.59224 -12.49665 -12.23419 -11.94946 -11.84184 -11.54939 -11.45120 -11.33877 -11.14730 -11.09234 -10.85932 -10.77616 -10.25443 -10.12887 -10.01876 -9.93310 -9.87060 -9.69658 -9.36453 -9.05158 -8.94705 -8.63155 -6.81498 -5.63438 -3.04957 2.38905 2.53261 2.66797 3.13841 3.42296 3.47568 3.49768 3.92833 4.13426 4.42338 4.49086 4.51297 4.68369 4.79099 4.87116 4.92006 5.02512 5.08182 5.12463 5.21506 5.24590 5.29881 5.32006 5.40752 5.44343 5.50808 5.51323 5.58871 5.62980 5.71215 5.75933 5.80555 5.87182 5.96427 6.06357 6.11706 6.20281 6.26112 6.44120 6.53042 6.60432 6.63022 6.79732 6.95669 7.22911 7.49371 7.54431 7.65826 7.87826 7.91281 8.17545 8.38141 9.24476 9.85088 10.49653 11.40420 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.002991 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.065802 B = 9358.270603 C =11246.203919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.527 3.473 3 O -0.539 6.539 4 N -0.623 5.623 5 C 0.100 3.900 6 C -0.116 4.116 7 C -0.097 4.097 8 C -0.136 4.136 9 C 0.525 3.475 10 O -0.539 6.539 11 N -0.720 5.720 12 C 0.132 3.868 13 C -0.110 4.110 14 H 0.076 0.924 15 C 0.141 3.859 16 N -0.604 5.604 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.160 3.840 26 C -0.111 4.111 27 H 0.071 0.929 28 C -0.134 4.134 29 C 0.114 3.886 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.401 0.599 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.024 0.976 44 H 0.018 0.982 45 H 0.252 0.748 46 H 0.106 0.894 47 H 0.013 0.987 48 H 0.044 0.956 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.079 0.921 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.047 -16.692 9.496 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.317 3.683 3 O -0.415 6.415 4 N -0.359 5.359 5 C -0.023 4.023 6 C -0.155 4.155 7 C -0.101 4.101 8 C -0.193 4.193 9 C 0.310 3.690 10 O -0.416 6.416 11 N -0.371 5.371 12 C 0.009 3.991 13 C -0.129 4.129 14 H 0.095 0.905 15 C 0.015 3.985 16 N -0.330 5.330 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.035 3.965 26 C -0.131 4.131 27 H 0.089 0.911 28 C -0.192 4.192 29 C -0.009 4.009 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.236 0.764 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.035 0.965 45 H 0.062 0.938 46 H 0.124 0.876 47 H 0.031 0.969 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.097 0.903 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.959 -16.074 8.655 25.609 hybrid contribution 0.411 1.006 0.630 1.256 sum -17.547 -15.068 9.285 24.924 Atomic orbital electron populations 1.21890 0.91147 1.05591 1.04123 1.20538 0.90398 0.81806 0.75608 1.90788 1.70734 1.30499 1.49472 1.48808 1.07066 1.06028 1.73981 1.22626 0.98245 0.81536 0.99917 1.22764 0.91351 0.99770 1.01593 1.21727 0.96839 0.96852 0.94642 1.21868 1.00286 0.99224 0.97967 1.20162 0.81551 0.77230 0.90064 1.90683 1.70104 1.49757 1.31102 1.46075 1.17053 1.62025 1.11944 1.21471 0.91057 1.00538 0.86009 1.22494 0.94093 0.96924 0.99381 0.90522 1.21325 0.92696 0.88944 0.95563 1.44472 1.27496 1.04037 1.56953 1.19094 1.08349 0.81975 1.25620 0.90522 1.24777 0.97466 0.98290 1.00121 1.69792 1.16556 1.33688 1.37097 0.86078 0.77731 0.84676 0.77088 1.21644 1.21643 1.20654 1.21983 0.89820 0.86909 0.97815 1.22604 0.97555 0.97318 0.95645 0.91058 1.21649 0.99339 0.96651 1.01530 1.22076 0.81881 0.95612 1.01336 0.89453 0.88796 0.89345 0.90573 0.89627 0.88674 0.89308 0.91496 0.91063 0.91343 0.76438 0.91590 0.91296 0.95835 0.96451 0.93760 0.87614 0.96916 0.93703 0.92658 0.92961 0.90294 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.25 36.00 0.33 -0.81 16 2 C 0.53 6.19 8.00 -10.99 -0.09 6.10 16 3 O -0.54 -9.15 17.43 5.55 0.10 -9.06 16 4 N -0.62 -6.16 3.29 -169.75 -0.56 -6.72 16 5 C 0.10 0.60 6.95 -2.13 -0.01 0.59 16 6 C -0.12 -0.89 5.96 -24.86 -0.15 -1.04 16 7 C -0.10 -0.87 0.80 -154.28 -0.12 -0.99 16 8 C -0.14 -0.86 8.13 37.15 0.30 -0.56 16 9 C 0.52 6.76 6.32 -10.98 -0.07 6.69 16 10 O -0.54 -8.86 15.45 5.56 0.09 -8.78 16 11 N -0.72 -9.13 5.15 -60.29 -0.31 -9.44 16 12 C 0.13 1.96 4.99 -4.04 -0.02 1.94 16 13 C -0.11 -1.82 2.48 -88.78 -0.22 -2.04 16 14 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 15 C 0.14 2.92 6.53 -3.06 -0.02 2.90 16 16 N -0.60 -15.61 3.39 -170.07 -0.58 -16.18 16 17 C -0.22 -6.32 10.27 -15.06 -0.15 -6.47 16 18 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -27.12 10.09 55.49 0.56 -26.56 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.16 3.84 5.36 -2.53 -0.01 3.83 16 26 C -0.11 -2.05 3.09 -88.48 -0.27 -2.33 16 27 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 28 C -0.13 -2.05 9.31 37.16 0.35 -1.70 16 29 C 0.11 1.18 6.21 -2.97 -0.02 1.16 16 30 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.09 0.67 8.12 -51.93 -0.42 0.24 16 32 H 0.09 0.46 7.91 -51.93 -0.41 0.05 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.36 7.23 -51.93 -0.38 -0.01 16 35 H 0.09 0.97 6.91 -51.93 -0.36 0.62 16 36 H 0.09 0.51 7.86 -51.93 -0.41 0.10 16 37 H 0.07 0.41 7.66 -51.93 -0.40 0.01 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.40 4.40 7.82 -40.82 -0.32 4.08 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 43 H 0.02 0.51 7.77 -51.93 -0.40 0.11 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.11 2.90 5.88 -51.93 -0.31 2.59 16 47 H 0.01 0.33 7.98 -51.93 -0.41 -0.09 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 51 H 0.08 0.69 7.68 -51.93 -0.40 0.29 16 52 H 0.08 1.12 7.51 -51.93 -0.39 0.73 16 LS Contribution 408.62 15.07 6.16 6.16 Total: -1.00 -36.14 408.62 -9.05 -45.19 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -9.20 Total: 1.01 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.28 Total: 6.84 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.89 Total: -58.89 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.18 Total: -17.83 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.14 -9.05 -45.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102499269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.371 kcal (2) G-P(sol) polarization free energy of solvation -36.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds