Wall clock time and date at job start Tue Mar 31 2020 19:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21288 * 119.99903 * 2 1 4 4 N 1.34776 * 120.00350 * 179.97438 * 2 1 3 5 5 C 1.48115 * 127.03100 * 359.95818 * 4 2 1 6 6 C 1.54942 * 103.25429 * 140.74329 * 5 4 2 7 7 C 1.54617 * 102.83849 * 37.37768 * 6 5 4 8 8 C 1.52994 * 110.41617 * 97.08622 * 7 6 5 9 9 C 1.50694 * 110.32445 * 219.25788 * 7 6 5 10 10 O 1.21283 * 120.00363 * 357.07287 * 9 7 6 11 11 N 1.34784 * 119.99988 * 177.07405 * 9 7 6 12 12 C 1.46493 * 119.99864 * 179.72721 * 11 9 7 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 H 1.08992 * 110.64639 * 56.68321 * 13 12 11 15 15 C 1.54330 * 110.71799 * 293.54460 * 13 12 11 16 16 N 1.47022 * 107.27027 * 219.44650 * 15 13 12 17 17 C 1.36931 * 125.64764 * 178.90446 * 16 15 13 18 18 H 1.08008 * 120.00050 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00076 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00032 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00041 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47556 * 90.00020 * 21 19 17 23 23 H 1.48504 * 109.46879 * 210.00103 * 21 19 17 24 24 H 1.48506 * 109.47209 * 329.99708 * 21 19 17 25 25 C 1.47424 * 108.70417 * 358.93865 * 16 15 13 26 26 C 1.54903 * 104.83178 * 24.12832 * 25 16 15 27 27 H 1.09003 * 111.00524 * 81.07064 * 26 25 16 28 28 C 1.53001 * 111.00446 * 204.91426 * 26 25 16 29 29 C 1.47480 * 127.03403 * 180.02562 * 4 2 1 30 30 H 1.09008 * 109.47221 * 240.00132 * 1 2 3 31 31 H 1.09001 * 109.47818 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.47122 * 120.00302 * 1 2 3 33 33 H 1.09005 * 110.66222 * 259.18763 * 5 4 2 34 34 H 1.09001 * 110.66502 * 22.12973 * 5 4 2 35 35 H 1.08992 * 110.73913 * 279.03371 * 6 5 4 36 36 H 1.09006 * 110.73691 * 155.71299 * 6 5 4 37 37 H 1.08997 * 109.47575 * 181.49300 * 8 7 6 38 38 H 1.09001 * 109.47463 * 301.49420 * 8 7 6 39 39 H 1.09004 * 109.47621 * 61.48789 * 8 7 6 40 40 H 0.97000 * 119.99339 * 0.02562 * 11 9 7 41 41 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 42 42 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 43 43 H 1.09002 * 109.88037 * 338.85787 * 15 13 12 44 44 H 1.08991 * 109.88492 * 99.87092 * 15 13 12 45 45 H 0.96994 * 119.99994 * 180.02562 * 20 19 17 46 46 H 1.08997 * 110.36667 * 142.97370 * 25 16 15 47 47 H 1.09004 * 110.36226 * 265.29598 * 25 16 15 48 48 H 1.09003 * 109.47028 * 172.19938 * 28 26 25 49 49 H 1.08995 * 109.47524 * 292.20134 * 28 26 25 50 50 H 1.09003 * 109.47187 * 52.20129 * 28 26 25 51 51 H 1.09000 * 109.91604 * 86.05254 * 29 4 2 52 52 H 1.09000 * 110.07437 * 324.85856 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.6030 -2.5309 0.0020 6 6 2.5390 -3.3144 -0.9523 7 6 3.9309 -2.7230 -0.6305 8 6 4.6748 -3.6187 0.3620 9 6 4.7360 -2.5618 -1.8940 10 8 4.2803 -2.9328 -2.9550 11 7 5.9627 -2.0054 -1.8452 12 6 6.7478 -1.8542 -3.0727 13 6 8.0909 -1.2005 -2.7417 14 1 8.6276 -1.7828 -1.9928 15 6 7.8876 0.2519 -2.2612 16 7 8.9689 1.0599 -2.8438 17 6 9.1359 2.4087 -2.6773 18 1 8.4366 2.9690 -2.0743 19 6 10.2038 3.0560 -3.2836 20 7 11.0562 2.3731 -4.0181 21 14 10.4319 4.8960 -3.0559 22 1 11.2797 5.1458 -1.8626 23 1 11.0902 5.4658 -4.2589 24 1 9.1070 5.5392 -2.8653 25 6 9.8433 0.1774 -3.6377 26 6 8.9472 -1.0257 -4.0237 27 1 8.3203 -0.7862 -4.8827 28 6 9.7906 -2.2732 -4.2942 29 6 3.6446 -1.3477 0.0011 30 1 -0.3634 -0.5138 0.8901 31 1 -0.3635 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6297 -2.9589 1.0042 34 1 0.5828 -2.5168 -0.3816 35 1 2.2721 -3.1293 -1.9927 36 1 2.5120 -4.3812 -0.7297 37 1 5.6417 -3.1746 0.5983 38 1 4.0871 -3.7162 1.2748 39 1 4.8256 -4.6038 -0.0797 40 1 6.3273 -1.7091 -0.9965 41 1 6.9209 -2.8347 -3.5164 42 1 6.2022 -1.2274 -3.7781 43 1 6.9217 0.6237 -2.6032 44 1 7.9362 0.2927 -1.1732 45 1 11.8025 2.8254 -4.4414 46 1 10.1916 0.6936 -4.5323 47 1 10.6898 -0.1571 -3.0379 48 1 9.1346 -3.1336 -4.4267 49 1 10.3809 -2.1238 -5.1983 50 1 10.4572 -2.4511 -3.4504 51 1 4.0214 -1.3229 1.0237 52 1 4.1186 -0.5627 -0.5881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102499269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:55 Heat of formation + Delta-G solvation = -78.981808 kcal Electronic energy + Delta-G solvation = -30464.223412 eV Core-core repulsion = 26462.866386 eV Total energy + Delta-G solvation = -4001.357026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.84527 -40.49520 -39.67479 -38.28643 -36.13951 -34.81625 -34.13279 -32.59550 -31.13028 -30.86307 -30.11552 -27.90356 -27.26266 -26.68294 -25.11281 -24.46797 -23.00046 -21.54080 -21.22148 -20.45477 -20.18843 -18.90290 -18.42732 -17.59231 -17.31007 -17.13479 -16.78459 -16.47361 -16.37249 -15.86940 -15.62694 -15.25909 -14.98894 -14.74648 -14.56544 -14.30788 -14.07568 -13.79784 -13.64178 -13.56497 -13.44308 -13.42313 -13.23765 -13.07775 -13.02461 -12.90700 -12.78764 -12.71364 -12.55965 -12.47878 -12.07300 -11.99781 -11.88140 -11.68449 -11.65333 -11.44763 -11.28080 -11.05668 -10.80108 -10.73772 -10.14956 -9.80458 -8.91608 -7.80918 -5.25336 1.42748 1.44509 1.49297 1.53525 1.58188 1.92822 2.14419 2.45997 3.25097 3.27685 3.43961 3.57756 3.67251 3.78158 3.82252 3.85816 3.93529 4.03641 4.20075 4.34139 4.34706 4.42076 4.46071 4.51147 4.58766 4.59306 4.66889 4.69986 4.72024 4.75333 4.81256 4.84361 4.91227 4.94110 4.97019 5.06062 5.07918 5.13720 5.18276 5.22222 5.33160 5.35840 5.36419 5.41346 5.47029 5.69922 5.81469 6.28832 6.46251 6.48858 7.07602 7.08434 7.15016 7.75376 8.38674 9.20386 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.002991 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.065802 B = 9358.270603 C =11246.203919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.513 3.487 3 O -0.608 6.608 4 N -0.625 5.625 5 C 0.101 3.899 6 C -0.116 4.116 7 C -0.086 4.086 8 C -0.132 4.132 9 C 0.520 3.480 10 O -0.578 6.578 11 N -0.717 5.717 12 C 0.145 3.855 13 C -0.087 4.087 14 H 0.100 0.900 15 C 0.138 3.862 16 N -0.628 5.628 17 C -0.243 4.243 18 H 0.074 0.926 19 C -0.064 4.064 20 N -0.946 5.946 21 Si 0.978 3.022 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.275 1.275 25 C 0.163 3.837 26 C -0.101 4.101 27 H 0.062 0.938 28 C -0.126 4.126 29 C 0.110 3.890 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.410 0.590 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.010 0.990 44 H 0.026 0.974 45 H 0.248 0.752 46 H 0.068 0.932 47 H -0.006 1.006 48 H 0.075 0.925 49 H 0.054 0.946 50 H 0.056 0.944 51 H 0.097 0.903 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.843 -19.399 11.464 30.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.305 3.695 3 O -0.490 6.490 4 N -0.359 5.359 5 C -0.019 4.019 6 C -0.154 4.154 7 C -0.090 4.090 8 C -0.189 4.189 9 C 0.307 3.693 10 O -0.458 6.458 11 N -0.368 5.368 12 C 0.021 3.979 13 C -0.106 4.106 14 H 0.118 0.882 15 C 0.013 3.987 16 N -0.354 5.354 17 C -0.372 4.372 18 H 0.092 0.908 19 C -0.257 4.257 20 N -0.595 5.595 21 Si 0.806 3.194 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.200 1.200 25 C 0.038 3.962 26 C -0.121 4.121 27 H 0.081 0.919 28 C -0.183 4.183 29 C -0.014 4.014 30 H 0.138 0.862 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.247 0.753 41 H 0.099 0.901 42 H 0.061 0.939 43 H 0.028 0.972 44 H 0.044 0.956 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.012 0.988 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.115 0.885 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.780 -18.845 10.655 29.324 hybrid contribution 0.953 1.845 0.002 2.076 sum -18.827 -17.000 10.656 27.514 Atomic orbital electron populations 1.21911 0.87201 1.06051 1.06573 1.21514 0.92358 0.81259 0.74354 1.90750 1.72369 1.33001 1.52890 1.49001 1.07073 1.07291 1.72521 1.22942 0.98782 0.78804 1.01413 1.22799 0.90585 1.01638 1.00373 1.21738 0.97370 0.96773 0.93122 1.21907 1.00456 0.98529 0.98030 1.20919 0.81316 0.76021 0.91054 1.90666 1.70813 1.51383 1.32901 1.46014 1.17223 1.61912 1.11605 1.21180 0.89804 1.00409 0.86520 1.22329 0.95076 0.94568 0.98669 0.88211 1.21471 0.90568 0.90894 0.95797 1.44790 1.28844 1.03982 1.57763 1.19410 1.08475 0.83699 1.25658 0.90840 1.25600 0.97398 1.02520 1.00136 1.70047 1.16751 1.35008 1.37696 0.85083 0.77721 0.79643 0.76916 1.20998 1.21603 1.20005 1.21771 0.90360 0.88450 0.95633 1.22445 0.97031 0.96575 0.96076 0.91947 1.21595 0.99357 0.95656 1.01725 1.22106 0.82519 0.95065 1.01694 0.86151 0.89504 0.87328 0.87215 0.87227 0.91659 0.86512 0.91293 0.88386 0.90777 0.75349 0.90053 0.93884 0.97237 0.95573 0.94221 0.91390 0.98836 0.90654 0.92705 0.92475 0.88467 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.25 71.23 0.66 -1.17 16 2 C 0.51 11.88 8.00 87.66 0.70 12.58 16 3 O -0.61 -21.75 17.43 -3.05 -0.05 -21.80 16 4 N -0.63 -11.42 3.29 -809.36 -2.66 -14.08 16 5 C 0.10 0.84 6.95 86.73 0.60 1.45 16 6 C -0.12 -1.46 5.96 31.81 0.19 -1.27 16 7 C -0.09 -1.39 0.80 -52.03 -0.04 -1.43 16 8 C -0.13 -1.19 8.13 71.98 0.58 -0.61 16 9 C 0.52 13.06 6.32 87.65 0.55 13.61 16 10 O -0.58 -18.95 15.45 -3.04 -0.05 -19.00 16 11 N -0.72 -17.69 5.15 -463.05 -2.38 -20.08 16 12 C 0.14 4.20 4.99 86.38 0.43 4.63 16 13 C -0.09 -2.84 2.48 -9.60 -0.02 -2.87 16 14 H 0.10 2.86 8.04 -2.39 -0.02 2.84 16 15 C 0.14 5.84 6.53 86.73 0.57 6.41 16 16 N -0.63 -33.60 3.39 -691.99 -2.35 -35.95 16 17 C -0.24 -14.32 10.27 84.04 0.86 -13.46 16 18 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 19 C -0.06 -3.74 5.49 84.86 0.47 -3.28 16 20 N -0.95 -57.55 10.09 21.65 0.22 -57.33 16 21 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 24 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 25 C 0.16 8.12 5.36 86.85 0.47 8.59 16 26 C -0.10 -3.74 3.09 -9.40 -0.03 -3.77 16 27 H 0.06 2.42 8.05 -2.39 -0.02 2.40 16 28 C -0.13 -3.63 9.31 71.98 0.67 -2.96 16 29 C 0.11 2.18 6.21 86.54 0.54 2.71 16 30 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.09 1.15 8.12 -2.39 -0.02 1.13 16 32 H 0.11 0.82 7.91 -2.39 -0.02 0.81 16 33 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.11 0.43 7.23 -2.39 -0.02 0.42 16 35 H 0.06 1.26 6.91 -2.39 -0.02 1.25 16 36 H 0.12 0.84 7.86 -2.38 -0.02 0.82 16 37 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 38 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.41 8.61 7.82 -92.71 -0.72 7.88 16 41 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.04 1.49 8.06 -2.38 -0.02 1.47 16 43 H 0.01 0.43 7.77 -2.39 -0.02 0.41 16 44 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 46 H 0.07 3.92 5.88 -2.39 -0.01 3.91 16 47 H -0.01 -0.33 7.98 -2.38 -0.02 -0.35 16 48 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.06 1.61 8.07 -2.39 -0.02 1.59 16 51 H 0.10 1.54 7.68 -2.39 -0.02 1.53 16 52 H 0.04 1.22 7.51 -2.39 -0.02 1.20 16 Total: -1.00 -85.55 408.62 2.12 -83.43 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.17 Total: 16.17 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 7.20 Total: 19.18 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -7.18 Total: -127.44 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -0.10 Total: -40.80 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -85.55 2.12 -83.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102499269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.452 kcal (2) G-P(sol) polarization free energy of solvation -85.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds