Wall clock time and date at job start Tue Mar 31 2020 19:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21280 * 120.00054 * 2 1 4 4 N 1.34781 * 120.00446 * 179.97438 * 2 1 3 5 5 C 1.48115 * 127.02791 * 359.96026 * 4 2 1 6 6 C 1.54950 * 103.25318 * 140.74297 * 5 4 2 7 7 C 1.54616 * 102.83893 * 37.37163 * 6 5 4 8 8 C 1.52995 * 110.41454 * 219.21469 * 7 6 5 9 9 C 1.50703 * 110.32412 * 97.04511 * 7 6 5 10 10 O 1.21279 * 119.99926 * 2.92332 * 9 7 6 11 11 N 1.34775 * 119.99773 * 182.92731 * 9 7 6 12 12 C 1.46504 * 119.99531 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.46883 * 179.97438 * 12 11 9 14 14 H 1.09004 * 110.88370 * 51.12274 * 13 12 11 15 15 C 1.54910 * 111.00525 * 287.19865 * 13 12 11 16 16 N 1.47421 * 104.82920 * 204.91362 * 15 13 12 17 17 C 1.36939 * 125.64460 * 204.17172 * 16 15 13 18 18 H 1.07997 * 120.00264 * 359.97403 * 17 16 15 19 19 C 1.38816 * 120.00010 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99595 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00263 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47067 * 90.00081 * 21 19 17 23 23 H 1.48499 * 109.47098 * 210.00020 * 21 19 17 24 24 H 1.48501 * 109.47086 * 329.99917 * 21 19 17 25 25 C 1.47020 * 108.70631 * 24.13030 * 16 15 13 26 26 C 1.54323 * 107.26852 * 358.93706 * 25 16 15 27 27 H 1.09007 * 110.71504 * 96.17122 * 26 25 16 28 28 C 1.52993 * 110.87141 * 219.36952 * 26 25 16 29 29 C 1.47481 * 127.03601 * 179.97438 * 4 2 1 30 30 H 1.09003 * 109.47246 * 269.99984 * 1 2 3 31 31 H 1.08994 * 109.47276 * 30.00070 * 1 2 3 32 32 H 1.09006 * 109.46992 * 150.00034 * 1 2 3 33 33 H 1.09001 * 110.66277 * 259.17978 * 5 4 2 34 34 H 1.08997 * 110.66538 * 22.13414 * 5 4 2 35 35 H 1.08999 * 110.73673 * 279.03474 * 6 5 4 36 36 H 1.08996 * 110.74006 * 155.71461 * 6 5 4 37 37 H 1.09003 * 109.47571 * 298.50921 * 8 7 6 38 38 H 1.09001 * 109.47060 * 58.51194 * 8 7 6 39 39 H 1.09001 * 109.47083 * 178.51101 * 8 7 6 40 40 H 0.96992 * 120.00503 * 359.97438 * 11 9 7 41 41 H 1.09001 * 109.46891 * 60.00097 * 12 11 9 42 42 H 1.08993 * 109.47378 * 299.99469 * 12 11 9 43 43 H 1.08997 * 110.36958 * 323.75749 * 15 13 12 44 44 H 1.09002 * 110.36150 * 86.07891 * 15 13 12 45 45 H 0.96999 * 119.99691 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.88509 * 239.52180 * 25 16 15 47 47 H 1.08999 * 109.88019 * 118.35167 * 25 16 15 48 48 H 1.09001 * 109.47270 * 173.61407 * 28 26 25 49 49 H 1.08998 * 109.47777 * 293.61122 * 28 26 25 50 50 H 1.09004 * 109.47449 * 53.61550 * 28 26 25 51 51 H 1.09000 * 109.90984 * 86.05551 * 29 4 2 52 52 H 1.08999 * 110.07482 * 324.86587 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.6030 -2.5309 0.0020 6 6 2.5391 -3.3144 -0.9524 7 6 3.9309 -2.7230 -0.6306 8 6 4.7505 -2.5595 -1.9121 9 6 4.6615 -3.6062 0.3478 10 8 4.1580 -4.6448 0.7203 11 7 5.8743 -3.2418 0.8090 12 6 6.5842 -4.1002 1.7607 13 6 7.9270 -3.4611 2.1205 14 1 7.7938 -2.4236 2.4273 15 6 8.9267 -3.5686 0.9421 16 7 10.2588 -3.5089 1.5707 17 6 11.4143 -3.1066 0.9555 18 1 11.3959 -2.7979 -0.0792 19 6 12.6092 -3.0956 1.6620 20 7 12.6316 -3.4724 2.9230 21 14 14.1852 -2.5462 0.8231 22 1 14.3550 -1.0816 0.9994 23 1 15.3412 -3.2550 1.4285 24 1 14.1121 -2.8654 -0.6253 25 6 10.1413 -3.9519 2.9676 26 6 8.6543 -4.2774 3.2214 27 1 8.4665 -5.3441 3.0980 28 6 8.2243 -3.8117 4.6138 29 6 3.6447 -1.3477 0.0001 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6298 -2.9590 1.0040 34 1 0.5829 -2.5168 -0.3817 35 1 2.2722 -3.1293 -1.9929 36 1 2.5120 -4.3811 -0.7299 37 1 4.9021 -3.5353 -2.3736 38 1 4.2162 -1.9091 -2.6046 39 1 5.7174 -2.1175 -1.6711 40 1 6.2772 -2.4114 0.5110 41 1 6.7566 -5.0775 1.3098 42 1 5.9837 -4.2169 2.6627 43 1 8.7961 -4.5158 0.4189 44 1 8.7939 -2.7331 0.2546 45 1 13.4666 -3.4650 3.4165 46 1 10.4660 -3.1558 3.6376 47 1 10.7482 -4.8433 3.1261 48 1 7.1488 -3.9486 4.7267 49 1 8.7463 -4.3975 5.3703 50 1 8.4711 -2.7571 4.7366 51 1 4.0221 -1.3225 1.0223 52 1 4.1183 -0.5630 -0.5898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102499270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:59 Heat of formation + Delta-G solvation = -77.271041 kcal Electronic energy + Delta-G solvation = -30236.296480 eV Core-core repulsion = 26235.013638 eV Total energy + Delta-G solvation = -4001.282842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.85839 -40.45483 -39.65363 -38.17573 -36.08579 -34.80070 -34.16246 -32.55077 -31.11859 -30.84368 -30.24164 -27.87161 -27.25980 -26.65822 -24.88181 -24.37160 -23.14913 -21.63234 -21.22190 -20.42547 -20.14667 -18.84969 -18.35943 -17.97071 -17.28026 -16.81255 -16.57859 -16.46465 -16.25526 -15.86146 -15.63416 -15.20101 -14.90467 -14.64493 -14.53215 -14.36061 -14.17568 -14.00935 -13.80221 -13.46367 -13.36805 -13.34720 -13.24465 -13.11555 -13.11115 -12.91851 -12.84619 -12.70128 -12.42151 -12.21511 -12.02684 -11.95516 -11.87517 -11.83820 -11.57034 -11.41196 -11.36344 -11.02794 -10.73540 -10.68586 -10.08671 -9.83082 -8.89489 -7.85025 -5.20459 1.45038 1.46728 1.52353 1.55234 1.60242 1.91780 2.16082 2.48850 3.25685 3.32940 3.43050 3.60600 3.65643 3.77629 3.83181 3.92811 3.95002 3.99414 4.19862 4.29651 4.36856 4.42977 4.49433 4.52759 4.56560 4.59694 4.70316 4.70464 4.73067 4.77724 4.82770 4.85372 4.85879 4.96236 4.96947 5.07706 5.10104 5.11548 5.15282 5.21100 5.27061 5.33505 5.38610 5.47047 5.48972 5.71532 5.81455 6.20274 6.48608 6.50077 7.08281 7.10483 7.17594 7.78327 8.42656 9.25179 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.002399 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.966473 B =11670.781309 C =12122.444063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.520 3.480 3 O -0.602 6.602 4 N -0.621 5.621 5 C 0.099 3.901 6 C -0.115 4.115 7 C -0.087 4.087 8 C -0.135 4.135 9 C 0.527 3.473 10 O -0.568 6.568 11 N -0.717 5.717 12 C 0.146 3.854 13 C -0.091 4.091 14 H 0.085 0.915 15 C 0.138 3.862 16 N -0.630 5.630 17 C -0.241 4.241 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.951 5.951 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.269 1.269 25 C 0.192 3.808 26 C -0.101 4.101 27 H 0.076 0.924 28 C -0.127 4.127 29 C 0.114 3.886 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.410 0.590 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.020 0.980 44 H 0.047 0.953 45 H 0.246 0.754 46 H 0.015 0.985 47 H 0.000 1.000 48 H 0.075 0.925 49 H 0.054 0.946 50 H 0.046 0.954 51 H 0.061 0.939 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.421 1.216 -6.984 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.312 3.688 3 O -0.483 6.483 4 N -0.354 5.354 5 C -0.023 4.023 6 C -0.153 4.153 7 C -0.091 4.091 8 C -0.193 4.193 9 C 0.313 3.687 10 O -0.448 6.448 11 N -0.368 5.368 12 C 0.022 3.978 13 C -0.111 4.111 14 H 0.104 0.896 15 C 0.013 3.987 16 N -0.356 5.356 17 C -0.370 4.370 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.806 3.194 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.193 1.193 25 C 0.067 3.933 26 C -0.121 4.121 27 H 0.094 0.906 28 C -0.185 4.185 29 C -0.010 4.010 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.245 0.755 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.033 0.967 47 H 0.018 0.982 48 H 0.094 0.906 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.079 0.921 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -27.296 1.132 -6.671 28.122 hybrid contribution 2.037 0.516 -0.077 2.103 sum -25.259 1.649 -6.749 26.197 Atomic orbital electron populations 1.21927 0.87489 1.06413 1.06208 1.21384 0.92120 0.81044 0.74231 1.90723 1.72152 1.32524 1.52923 1.49006 1.06970 1.06951 1.72497 1.22814 0.99601 0.79410 1.00462 1.22801 0.90232 1.01221 1.01041 1.21649 0.97919 0.93828 0.95700 1.21878 0.99709 1.03412 0.94295 1.20603 0.80947 0.86031 0.81114 1.90666 1.67687 1.26352 1.60053 1.46020 1.18850 1.25837 1.46044 1.21156 0.90813 0.93309 0.92558 1.22475 0.92765 1.00032 0.95833 0.89645 1.21759 0.84323 0.98098 0.94482 1.44799 1.03949 1.77422 1.09407 1.19460 0.85780 1.36236 0.95481 0.89909 1.25659 1.00998 1.02524 0.96950 1.70195 1.25658 1.54727 1.09453 0.85093 0.78950 0.77460 0.77932 1.21261 1.22259 1.19340 1.20974 0.91379 0.95861 0.85118 1.22307 0.94825 0.99390 0.95529 0.90607 1.21635 1.01477 1.00704 0.94664 1.21996 0.82601 0.95670 1.00747 0.87351 0.88565 0.87218 0.90964 0.86109 0.87982 0.88689 0.91228 0.89904 0.91460 0.75456 0.92055 0.90721 0.96259 0.93483 0.94501 0.96715 0.98219 0.90566 0.92727 0.93506 0.92117 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.94 71.23 0.71 -0.64 16 2 C 0.52 9.78 8.00 87.66 0.70 10.48 16 3 O -0.60 -17.60 17.44 -3.03 -0.05 -17.66 16 4 N -0.62 -9.99 3.29 -809.44 -2.66 -12.65 16 5 C 0.10 1.04 6.94 86.74 0.60 1.65 16 6 C -0.11 -1.40 6.01 31.81 0.19 -1.21 16 7 C -0.09 -1.37 0.80 -52.05 -0.04 -1.41 16 8 C -0.14 -1.81 8.13 71.98 0.59 -1.22 16 9 C 0.53 11.52 6.31 87.66 0.55 12.07 16 10 O -0.57 -15.95 15.40 -3.03 -0.05 -15.99 16 11 N -0.72 -15.55 5.28 -463.05 -2.45 -18.00 16 12 C 0.15 3.70 5.13 86.38 0.44 4.14 16 13 C -0.09 -2.81 2.49 -9.40 -0.02 -2.83 16 14 H 0.09 2.59 8.05 -2.39 -0.02 2.57 16 15 C 0.14 5.31 6.65 86.86 0.58 5.89 16 16 N -0.63 -32.01 3.39 -692.01 -2.35 -34.36 16 17 C -0.24 -13.44 10.28 84.03 0.86 -12.58 16 18 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 19 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 20 N -0.95 -57.70 10.31 21.65 0.22 -57.48 16 21 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C 0.19 9.41 4.97 86.73 0.43 9.84 16 26 C -0.10 -3.53 3.01 -9.61 -0.03 -3.56 16 27 H 0.08 2.55 8.04 -2.38 -0.02 2.53 16 28 C -0.13 -3.75 9.17 71.98 0.66 -3.09 16 29 C 0.11 2.02 6.20 86.52 0.54 2.55 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 0.27 6.46 -2.38 -0.02 0.25 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.12 0.45 6.45 -2.39 -0.02 0.44 16 35 H 0.10 0.87 7.87 -2.39 -0.02 0.85 16 36 H 0.09 1.43 6.80 -2.39 -0.02 1.41 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 40 H 0.41 7.80 7.96 -92.71 -0.74 7.06 16 41 H 0.06 1.70 7.96 -2.39 -0.02 1.68 16 42 H 0.07 1.83 8.09 -2.39 -0.02 1.82 16 43 H 0.02 0.76 7.91 -2.39 -0.02 0.74 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 46 H 0.01 0.81 7.02 -2.39 -0.02 0.79 16 47 H 0.00 -0.03 7.51 -2.39 -0.02 -0.04 16 48 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 49 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.05 1.45 8.07 -2.39 -0.02 1.43 16 51 H 0.06 1.20 7.62 -2.39 -0.02 1.19 16 52 H 0.08 1.58 7.60 -2.39 -0.02 1.57 16 Total: -1.00 -78.22 407.79 2.08 -76.14 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.16 Total: 15.35 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 7.22 Total: 16.64 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -7.24 Total: -122.50 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.10 Total: -33.65 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -78.22 2.08 -76.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102499270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.128 kcal (2) G-P(sol) polarization free energy of solvation -78.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds