Wall clock time and date at job start Tue Mar 31 2020 19:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47320 * 2 1 4 4 C 1.53003 * 109.47037 * 240.00775 * 2 1 3 5 5 C 1.50703 * 109.47342 * 174.99979 * 4 2 1 6 6 O 1.21283 * 119.99825 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00258 * 179.97438 * 5 4 2 8 8 C 1.46494 * 120.00029 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46841 * 180.02562 * 8 7 5 10 10 H 1.08999 * 110.88828 * 51.12142 * 9 8 7 11 11 C 1.54913 * 111.00405 * 287.19444 * 9 8 7 12 12 N 1.47421 * 104.83060 * 204.91574 * 11 9 8 13 13 C 1.36943 * 125.64760 * 204.08082 * 12 11 9 14 14 H 1.07998 * 119.99752 * 0.03366 * 13 12 11 15 15 C 1.38811 * 119.99883 * 180.02562 * 13 12 11 16 16 N 1.31614 * 120.00300 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99765 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47112 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46879 * 120.00229 * 17 15 13 20 20 H 1.48501 * 109.47220 * 240.00259 * 17 15 13 21 21 C 1.47021 * 108.70613 * 24.13129 * 12 11 9 22 22 C 1.54329 * 107.26888 * 358.93969 * 21 12 11 23 23 H 1.09002 * 110.72127 * 96.16949 * 22 21 12 24 24 C 1.52996 * 110.86993 * 219.37244 * 22 21 12 25 25 N 1.46498 * 109.47784 * 120.00405 * 2 1 3 26 26 C 1.46761 * 124.35198 * 240.00286 * 25 2 1 27 27 C 1.54474 * 105.47258 * 197.03175 * 26 25 2 28 28 C 1.54625 * 101.76763 * 334.58255 * 27 26 25 29 29 C 1.34417 * 124.34508 * 60.01839 * 25 2 1 30 30 O 1.21278 * 124.94576 * 359.54603 * 29 25 2 31 31 H 1.08998 * 109.47320 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47080 * 299.99770 * 1 2 3 33 33 H 1.08999 * 109.47425 * 59.99683 * 1 2 3 34 34 H 1.09001 * 109.46641 * 294.99418 * 4 2 1 35 35 H 1.08996 * 109.47495 * 54.99289 * 4 2 1 36 36 H 0.97005 * 119.99697 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.47103 * 299.99761 * 8 7 5 38 38 H 1.08999 * 109.47263 * 60.00575 * 8 7 5 39 39 H 1.08992 * 110.37132 * 323.76001 * 11 9 8 40 40 H 1.09005 * 110.36394 * 86.07643 * 11 9 8 41 41 H 0.96998 * 120.00375 * 179.97438 * 16 15 13 42 42 H 1.08992 * 109.88315 * 239.52054 * 21 12 11 43 43 H 1.08998 * 109.88058 * 118.35270 * 21 12 11 44 44 H 1.08999 * 109.47347 * 173.61233 * 24 22 21 45 45 H 1.09006 * 109.47122 * 293.60738 * 24 22 21 46 46 H 1.08998 * 109.47168 * 53.61218 * 24 22 21 47 47 H 1.08998 * 110.24663 * 316.03470 * 26 25 2 48 48 H 1.09002 * 110.24657 * 78.03545 * 26 25 2 49 49 H 1.09001 * 110.97106 * 216.46345 * 27 26 25 50 50 H 1.09007 * 110.96855 * 92.70203 * 27 26 25 51 51 H 1.09001 * 110.48978 * 266.11806 * 28 27 26 52 52 H 1.09000 * 110.49031 * 143.47236 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3129 6 8 4.1450 -0.0203 -0.4446 7 7 4.2149 -1.1803 -2.3345 8 6 5.6749 -1.0764 -2.3965 9 6 6.1848 -1.7976 -3.6459 10 1 5.6485 -1.4630 -4.5339 11 6 6.0824 -3.3345 -3.4805 12 7 7.1050 -3.8810 -4.3909 13 6 7.0961 -5.1354 -4.9402 14 1 6.2896 -5.8176 -4.7155 15 6 8.1237 -5.5299 -5.7860 16 7 9.1067 -4.6987 -6.0597 17 14 8.1112 -7.2408 -6.5359 18 1 6.9055 -7.9747 -6.0745 19 1 8.0874 -7.1320 -8.0167 20 1 9.3304 -7.9756 -6.1130 21 6 8.1365 -2.8567 -4.6106 22 6 7.7150 -1.6038 -3.8143 23 1 8.2098 -1.5793 -2.8433 24 6 8.0153 -0.3288 -4.6049 25 7 2.0184 -0.6907 1.1961 26 6 2.8657 -0.0713 2.2220 27 6 3.4729 -1.2467 3.0196 28 6 2.4212 -2.3575 2.7940 29 6 1.7484 -1.9731 1.4946 30 8 1.0646 -2.7141 0.8208 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.7516 -1.7714 -1.2057 35 1 1.6053 -0.2616 -2.1370 36 1 3.7325 -1.6554 -3.0292 37 1 5.9628 -0.0260 -2.4409 38 1 6.1098 -1.5354 -1.5087 39 1 6.2989 -3.6206 -2.4513 40 1 5.0909 -3.6820 -3.7711 41 1 9.8249 -4.9745 -6.6504 42 1 8.2009 -2.6171 -5.6719 43 1 9.1000 -3.2178 -4.2508 44 1 7.6077 0.5320 -4.0748 45 1 9.0939 -0.2127 -4.7110 46 1 7.5583 -0.3973 -5.5921 47 1 3.6562 0.5156 1.7544 48 1 2.2646 0.5587 2.8776 49 1 3.5569 -0.9981 4.0775 50 1 4.4407 -1.5369 2.6105 51 1 1.6978 -2.3692 3.6093 52 1 2.9065 -3.3289 2.6995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102509283.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:51 Heat of formation + Delta-G solvation = -57.725990 kcal Electronic energy + Delta-G solvation = -30374.940307 eV Core-core repulsion = 26374.505002 eV Total energy + Delta-G solvation = -4000.435305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.83116 -39.47537 -38.00099 -36.45918 -35.13237 -34.54485 -32.93674 -30.74295 -30.51434 -29.52446 -27.93346 -27.63999 -25.93159 -24.98679 -23.15048 -22.46776 -22.09907 -20.69660 -20.00638 -19.26986 -18.85886 -17.20696 -17.05301 -16.74069 -16.49497 -16.04375 -15.56718 -14.99958 -14.76498 -14.31493 -14.20373 -13.92561 -13.82228 -13.72798 -13.64341 -13.26902 -13.06735 -12.96833 -12.89299 -12.53949 -12.17251 -12.13890 -12.02556 -11.77295 -11.69357 -11.63577 -11.39584 -11.36834 -11.21720 -11.16196 -10.81364 -10.77890 -10.17552 -9.99309 -9.96827 -9.90229 -9.71818 -9.65246 -9.51381 -8.92631 -8.82017 -8.60626 -6.82875 -5.71237 -3.04658 2.48663 2.68685 2.86958 3.24925 3.39698 3.45534 3.47812 4.18415 4.34812 4.49301 4.56010 4.63126 4.67931 4.84914 4.96867 5.06191 5.15684 5.20565 5.24171 5.31878 5.33184 5.37441 5.44809 5.47447 5.53277 5.56085 5.60981 5.63846 5.70411 5.75927 5.85800 5.86564 5.94011 6.02150 6.10557 6.17755 6.28402 6.46626 6.47421 6.49741 6.58007 6.61922 6.76229 6.94486 7.05158 7.56931 7.57669 7.63959 7.83810 8.08938 8.26023 8.27505 9.22429 9.82647 10.48706 11.40435 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.002537 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.251188 B =11032.866066 C =11749.275274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.175 3.825 3 H 0.095 0.905 4 C -0.164 4.164 5 C 0.515 3.485 6 O -0.545 6.545 7 N -0.725 5.725 8 C 0.135 3.865 9 C -0.113 4.113 10 H 0.079 0.921 11 C 0.142 3.858 12 N -0.607 5.607 13 C -0.228 4.228 14 H 0.078 0.922 15 C -0.009 4.009 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.184 3.816 22 C -0.110 4.110 23 H 0.066 0.934 24 C -0.134 4.134 25 N -0.602 5.602 26 C 0.105 3.895 27 C -0.131 4.131 28 C -0.157 4.157 29 C 0.515 3.485 30 O -0.537 6.537 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.401 0.599 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.018 0.982 40 H 0.035 0.965 41 H 0.251 0.749 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.094 0.906 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.100 0.900 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.060 13.964 15.235 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.072 3.928 3 H 0.113 0.887 4 C -0.205 4.205 5 C 0.301 3.699 6 O -0.424 6.424 7 N -0.376 5.376 8 C 0.011 3.989 9 C -0.132 4.132 10 H 0.098 0.902 11 C 0.016 3.984 12 N -0.333 5.333 13 C -0.356 4.356 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.569 5.569 17 Si 0.742 3.258 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.059 3.941 22 C -0.130 4.130 23 H 0.085 0.915 24 C -0.191 4.191 25 N -0.336 5.336 26 C -0.018 4.018 27 C -0.169 4.169 28 C -0.197 4.197 29 C 0.303 3.697 30 O -0.414 6.414 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.035 0.965 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.112 0.888 48 H 0.081 0.919 49 H 0.105 0.895 50 H 0.101 0.899 51 H 0.118 0.882 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.856 13.909 15.285 24.881 hybrid contribution -0.036 -1.163 -0.830 1.429 sum -13.891 12.746 14.456 23.757 Atomic orbital electron populations 1.22189 0.94291 1.03838 1.02258 1.20625 0.93645 0.96212 0.82368 0.88706 1.22201 0.93029 1.05234 1.00015 1.20513 0.89730 0.78345 0.81301 1.90609 1.70456 1.42909 1.38385 1.46111 1.08454 1.56412 1.26636 1.21354 0.78719 1.00268 0.98537 1.22674 0.97268 0.97088 0.96215 0.90221 1.21572 0.93095 0.90023 0.93710 1.44477 1.22934 1.12529 1.53317 1.19110 1.06256 0.88597 1.21631 0.90446 1.24798 0.97146 0.98344 1.00200 1.69969 1.12408 1.34338 1.40205 0.86052 0.77327 0.83691 0.78760 1.20506 1.21774 1.21759 1.21214 0.91688 0.83957 0.97221 1.22435 0.93581 0.97328 0.99672 0.91525 1.21686 1.01270 0.96296 0.99864 1.48212 1.50789 1.11985 1.22569 1.22114 0.94357 0.96016 0.89340 1.22569 0.98914 0.94367 1.01009 1.22337 0.99462 1.01125 0.96795 1.20902 0.80065 0.81602 0.87085 1.90687 1.39979 1.54913 1.55851 0.90809 0.92196 0.91281 0.87334 0.87930 0.76454 0.91797 0.91655 0.96452 0.94652 0.93829 0.93311 0.94071 0.93717 0.92774 0.92725 0.88778 0.91856 0.89521 0.89868 0.88171 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.20 37.16 0.34 -1.03 16 2 C 0.17 1.65 2.43 -67.93 -0.16 1.49 16 3 H 0.09 0.84 7.88 -51.93 -0.41 0.44 16 4 C -0.16 -1.66 5.13 -27.88 -0.14 -1.80 16 5 C 0.51 6.52 7.69 -10.98 -0.08 6.43 16 6 O -0.55 -8.02 13.61 5.55 0.08 -7.95 16 7 N -0.73 -9.17 5.50 -60.29 -0.33 -9.50 16 8 C 0.13 1.93 5.13 -4.04 -0.02 1.91 16 9 C -0.11 -1.86 2.49 -88.47 -0.22 -2.08 16 10 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 11 C 0.14 2.90 6.65 -2.53 -0.02 2.88 16 12 N -0.61 -15.45 3.39 -170.08 -0.58 -16.03 16 13 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 14 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 15 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 16 N -0.92 -27.10 10.31 55.49 0.57 -26.52 16 17 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 C 0.18 4.41 4.97 -3.06 -0.02 4.40 16 22 C -0.11 -1.99 3.01 -88.78 -0.27 -2.26 16 23 H 0.07 1.17 8.04 -51.93 -0.42 0.76 16 24 C -0.13 -2.06 9.17 37.16 0.34 -1.72 16 25 N -0.60 -6.20 2.20 -164.85 -0.36 -6.57 16 26 C 0.10 0.87 6.86 -3.13 -0.02 0.85 16 27 C -0.13 -0.97 7.18 -25.10 -0.18 -1.15 16 28 C -0.16 -1.36 6.86 -26.74 -0.18 -1.55 16 29 C 0.52 6.18 7.39 -10.86 -0.08 6.10 16 30 O -0.54 -8.18 15.07 5.56 0.08 -8.10 16 31 H 0.07 0.76 6.77 -51.93 -0.35 0.41 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.11 1.28 6.65 -51.93 -0.35 0.93 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 4.53 8.47 -40.82 -0.35 4.18 16 37 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.07 1.03 7.96 -51.93 -0.41 0.61 16 39 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.05 1.29 7.02 -51.93 -0.36 0.93 16 43 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 44 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 47 H 0.09 0.92 6.71 -51.93 -0.35 0.57 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 405.65 15.07 6.11 6.11 Total: -1.00 -33.69 405.65 -9.66 -43.36 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -9.25 Total: 2.39 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.97 Total: 5.59 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.70 Total: -58.62 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.16 Total: -16.04 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.69 -9.66 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102509283.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.369 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds