Wall clock time and date at job start Tue Mar 31 2020 19:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47261 * 2 1 4 4 C 1.50697 * 109.47772 * 119.99771 * 2 1 3 5 5 O 1.21280 * 120.00347 * 119.99570 * 4 2 1 6 6 N 1.34776 * 119.99890 * 300.00429 * 4 2 1 7 7 C 1.46505 * 119.99933 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47309 * 180.02562 * 7 6 4 9 9 H 1.09003 * 110.64280 * 54.29492 * 8 7 6 10 10 C 1.54331 * 110.71495 * 291.15668 * 8 7 6 11 11 N 1.47025 * 107.27022 * 219.44088 * 10 8 7 12 12 C 1.36938 * 125.65051 * 178.97780 * 11 10 8 13 13 H 1.07994 * 119.99609 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00109 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99603 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99915 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47366 * 60.00027 * 16 14 12 18 18 H 1.48500 * 109.47196 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47227 * 299.99963 * 16 14 12 20 20 C 1.47434 * 108.70085 * 358.94262 * 11 10 8 21 21 C 1.55116 * 104.94478 * 24.00209 * 20 11 10 22 22 H 1.09001 * 110.93723 * 81.21247 * 21 20 11 23 23 C 1.52993 * 111.16571 * 205.13238 * 21 20 11 24 24 N 1.46500 * 109.47089 * 240.00175 * 2 1 3 25 25 C 1.45756 * 117.94952 * 120.01906 * 24 2 1 26 26 C 1.52904 * 110.49853 * 160.93769 * 25 24 2 27 27 C 1.53347 * 108.68532 * 50.72473 * 26 25 24 28 28 C 1.53076 * 108.42242 * 292.48235 * 27 26 25 29 29 C 1.33347 * 117.94744 * 299.99327 * 24 2 1 30 30 O 1.21282 * 118.24464 * 2.20551 * 29 24 2 31 31 H 1.08995 * 109.47190 * 60.00217 * 1 2 3 32 32 H 1.09004 * 109.46665 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46774 * 299.99670 * 1 2 3 34 34 H 0.97002 * 120.00227 * 359.97438 * 6 4 2 35 35 H 1.09003 * 109.46974 * 300.00100 * 7 6 4 36 36 H 1.08994 * 109.47210 * 59.99640 * 7 6 4 37 37 H 1.08996 * 109.88206 * 338.85823 * 10 8 7 38 38 H 1.09003 * 109.87924 * 100.03125 * 10 8 7 39 39 H 0.97007 * 119.99270 * 180.02562 * 15 14 12 40 40 H 1.09004 * 110.36428 * 142.96703 * 20 11 10 41 41 H 1.09000 * 110.36151 * 265.28723 * 20 11 10 42 42 H 1.08994 * 109.47758 * 172.17118 * 23 21 20 43 43 H 1.09000 * 109.46957 * 292.17183 * 23 21 20 44 44 H 1.09004 * 109.46908 * 52.16458 * 23 21 20 45 45 H 1.08995 * 109.29964 * 281.23999 * 25 24 2 46 46 H 1.09001 * 109.30058 * 40.81925 * 25 24 2 47 47 H 1.08997 * 109.59044 * 290.97160 * 26 25 24 48 48 H 1.08997 * 109.60802 * 170.48810 * 26 25 24 49 49 H 1.08991 * 109.67511 * 172.75158 * 27 26 25 50 50 H 1.09004 * 109.67114 * 52.21126 * 27 26 25 51 51 H 1.08999 * 109.39845 * 169.02952 * 28 27 26 52 52 H 1.08998 * 109.40193 * 288.85205 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7297 -1.6964 1.1192 6 7 1.7069 -0.2499 2.4545 7 6 2.1949 -0.9407 3.6507 8 6 1.6845 -0.2199 4.9000 9 1 0.5995 -0.1201 4.8697 10 6 2.3560 1.1621 5.0454 11 7 2.6356 1.3632 6.4748 12 6 3.2464 2.4599 7.0219 13 1 3.5679 3.2719 6.3867 14 6 3.4532 2.5273 8.3929 15 7 3.0628 1.5369 9.1668 16 14 4.2870 4.0230 9.1392 17 1 3.4879 5.2376 8.8368 18 1 4.3875 3.8510 10.6107 19 1 5.6480 4.1699 8.5634 20 6 2.1488 0.1888 7.2215 21 6 2.1317 -0.9652 6.1852 22 1 3.1266 -1.3932 6.0624 23 6 1.1178 -2.0427 6.5750 24 7 2.0183 -0.6906 -1.1962 25 6 2.8533 0.0603 -2.1254 26 6 3.6412 -0.8914 -3.0262 27 6 2.6684 -1.9061 -3.6390 28 6 2.1401 -2.8068 -2.5196 29 6 1.6714 -1.9668 -1.3664 30 8 0.9383 -2.4767 -0.5457 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.1494 0.5390 2.5436 35 1 1.8313 -1.9683 3.6506 36 1 3.2848 -0.9411 3.6508 37 1 3.2869 1.1833 4.4790 38 1 1.6831 1.9408 4.6863 39 1 3.2070 1.5843 10.1249 40 1 2.8267 -0.0467 8.0419 41 1 1.1427 0.3703 7.5997 42 1 1.0271 -2.7664 5.7651 43 1 1.4558 -2.5495 7.4789 44 1 0.1483 -1.5797 6.7590 45 1 2.2213 0.6992 -2.7421 46 1 3.5515 0.6797 -1.5626 47 1 4.3924 -1.4157 -2.4356 48 1 4.1271 -0.3249 -3.8206 49 1 3.1886 -2.5108 -4.3818 50 1 1.8378 -1.3801 -4.1096 51 1 1.3081 -3.4018 -2.8960 52 1 2.9365 -3.4704 -2.1826 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102595257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:09 Heat of formation + Delta-G solvation = -51.407721 kcal Electronic energy + Delta-G solvation = -30474.431392 eV Core-core repulsion = 26474.270068 eV Total energy + Delta-G solvation = -4000.161324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14279 -39.17279 -37.85864 -36.62401 -34.87262 -34.56750 -32.93135 -31.06191 -30.72532 -29.78970 -28.93115 -26.04052 -25.31844 -24.89342 -24.30693 -23.03223 -22.29747 -20.54985 -19.80202 -19.31896 -18.60847 -17.47249 -17.19285 -16.75584 -16.10137 -15.71756 -15.57081 -15.09083 -14.80609 -14.53082 -14.28604 -14.17636 -13.96232 -13.76953 -13.58116 -13.51488 -13.16107 -12.79109 -12.59184 -12.53849 -12.35485 -12.11228 -11.88052 -11.81216 -11.52566 -11.41792 -11.35392 -11.33834 -11.27766 -11.11118 -10.87057 -10.77870 -10.21042 -10.03677 -9.91404 -9.84637 -9.71152 -9.57939 -9.38176 -8.85602 -8.79840 -8.64234 -6.82472 -5.64457 -3.06380 2.50447 2.74555 2.79638 3.40026 3.40658 3.44273 3.45814 4.28712 4.34425 4.36659 4.47245 4.48766 4.71101 4.81239 4.86531 5.02560 5.09493 5.10417 5.18170 5.30977 5.33536 5.34687 5.39706 5.47131 5.51145 5.52158 5.52528 5.59029 5.62730 5.81013 5.81587 5.92150 6.00563 6.12191 6.18715 6.24548 6.25113 6.31204 6.53282 6.57594 6.62558 6.66553 6.84094 6.98312 7.31195 7.55182 7.63212 7.64552 7.87896 8.12824 8.37591 8.39519 9.22822 9.83740 10.49111 11.39097 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.002373 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.218755 B =11795.455089 C =12602.319614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 H 0.110 0.890 4 C 0.509 3.491 5 O -0.528 6.528 6 N -0.724 5.724 7 C 0.136 3.864 8 C -0.109 4.109 9 H 0.076 0.924 10 C 0.142 3.858 11 N -0.605 5.605 12 C -0.223 4.223 13 H 0.076 0.924 14 C -0.011 4.011 15 N -0.922 5.922 16 Si 0.915 3.085 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.160 3.840 21 C -0.111 4.111 22 H 0.070 0.930 23 C -0.134 4.134 24 N -0.592 5.592 25 C 0.115 3.885 26 C -0.137 4.137 27 C -0.123 4.123 28 C -0.133 4.133 29 C 0.527 3.473 30 O -0.536 6.536 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.399 0.601 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.017 0.983 39 H 0.252 0.748 40 H 0.106 0.894 41 H 0.013 0.987 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.070 0.930 51 H 0.097 0.903 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 -4.495 -25.575 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 H 0.128 0.872 4 C 0.293 3.707 5 O -0.403 6.403 6 N -0.376 5.376 7 C 0.013 3.987 8 C -0.129 4.129 9 H 0.094 0.906 10 C 0.016 3.984 11 N -0.331 5.331 12 C -0.351 4.351 13 H 0.094 0.906 14 C -0.207 4.207 15 N -0.570 5.570 16 Si 0.745 3.255 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.212 1.212 20 C 0.035 3.965 21 C -0.131 4.131 22 H 0.089 0.911 23 C -0.192 4.192 24 N -0.325 5.325 25 C -0.008 4.008 26 C -0.174 4.174 27 C -0.160 4.160 28 C -0.172 4.172 29 C 0.316 3.684 30 O -0.412 6.412 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.124 0.876 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.088 0.912 51 H 0.115 0.885 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.281 -5.423 -25.031 25.821 hybrid contribution 0.237 1.350 0.442 1.440 sum -3.044 -4.072 -24.589 25.110 Atomic orbital electron populations 1.22200 0.92389 1.05386 1.02486 1.20970 0.96500 0.96403 0.84457 0.87215 1.20618 0.80525 0.84901 0.84669 1.90672 1.37685 1.25534 1.86422 1.45982 1.53874 1.32146 1.05590 1.21399 0.99119 0.95747 0.82456 1.22491 0.99947 0.96673 0.93741 0.90564 1.21327 0.96147 0.92809 0.88103 1.44484 1.69136 1.19133 1.00307 1.19019 1.30312 0.95061 0.90755 0.90629 1.24791 1.01484 0.98418 0.96004 1.69792 1.52204 1.31111 1.03922 0.86152 0.79268 0.81920 0.78145 1.21252 1.21563 1.21187 1.22020 0.98482 0.82650 0.93361 1.22627 0.98221 0.96814 0.95481 0.91122 1.21643 0.98973 0.98026 1.00551 1.47059 1.51526 1.11688 1.22260 1.21440 0.93454 0.94313 0.91616 1.21882 0.98376 0.97887 0.99293 1.21657 0.99348 0.97565 0.97467 1.21646 1.03297 0.98373 0.93917 1.19954 0.80219 0.81215 0.87045 1.90670 1.36655 1.69870 1.44052 0.91759 0.89191 0.91203 0.76698 0.91764 0.91566 0.95899 0.96465 0.93676 0.87620 0.96948 0.93621 0.92693 0.92966 0.91523 0.90659 0.90638 0.89713 0.90588 0.91170 0.88455 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 8.98 37.16 0.33 -1.30 16 2 C 0.12 1.34 3.02 -69.09 -0.21 1.13 16 3 H 0.11 0.87 7.79 -51.93 -0.40 0.46 16 4 C 0.51 7.51 6.41 -10.99 -0.07 7.44 16 5 O -0.53 -9.93 14.56 -15.22 -0.22 -10.15 16 6 N -0.72 -9.99 5.32 -60.30 -0.32 -10.31 16 7 C 0.14 2.17 5.00 -4.04 -0.02 2.15 16 8 C -0.11 -1.88 2.45 -88.78 -0.22 -2.10 16 9 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 10 C 0.14 2.91 6.64 -3.06 -0.02 2.89 16 11 N -0.60 -15.51 3.40 -169.93 -0.58 -16.09 16 12 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 13 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 14 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 15 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 16 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 C 0.16 3.87 5.37 -2.41 -0.01 3.86 16 21 C -0.11 -2.12 3.10 -88.36 -0.27 -2.39 16 22 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 23 C -0.13 -2.17 9.31 37.15 0.35 -1.82 16 24 N -0.59 -6.17 2.61 -168.71 -0.44 -6.61 16 25 C 0.11 0.77 6.25 -4.49 -0.03 0.74 16 26 C -0.14 -0.76 6.02 -26.60 -0.16 -0.92 16 27 C -0.12 -0.68 6.03 -26.51 -0.16 -0.84 16 28 C -0.13 -1.14 6.03 -28.10 -0.17 -1.31 16 29 C 0.53 6.59 6.12 -11.87 -0.07 6.52 16 30 O -0.54 -8.91 12.86 -15.22 -0.20 -9.11 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.16 5.84 -51.93 -0.30 0.86 16 33 H 0.07 0.59 7.57 -51.93 -0.39 0.20 16 34 H 0.40 4.58 7.82 -40.82 -0.32 4.26 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.16 8.01 -51.93 -0.42 0.74 16 37 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.11 2.91 5.87 -51.93 -0.30 2.60 16 41 H 0.01 0.32 7.99 -51.93 -0.41 -0.09 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.47 8.04 -51.93 -0.42 0.05 16 47 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 48 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 49 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 51 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -35.68 400.81 -10.41 -46.09 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -9.25 Total: 2.21 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -0.98 Total: 7.24 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.78 Total: -59.39 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.42 Total: -19.26 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.68 -10.41 -46.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102595257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.316 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds