Wall clock time and date at job start Tue Mar 31 2020 19:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47261 * 2 1 4 4 C 1.50697 * 109.47772 * 119.99771 * 2 1 3 5 5 O 1.21280 * 120.00347 * 119.99570 * 4 2 1 6 6 N 1.34776 * 119.99890 * 300.00429 * 4 2 1 7 7 C 1.46505 * 119.99933 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47309 * 180.02562 * 7 6 4 9 9 H 1.09003 * 110.64280 * 54.29492 * 8 7 6 10 10 C 1.54331 * 110.71495 * 291.15668 * 8 7 6 11 11 N 1.47025 * 107.27022 * 219.44088 * 10 8 7 12 12 C 1.36938 * 125.65051 * 178.97780 * 11 10 8 13 13 H 1.07994 * 119.99609 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00109 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99603 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99915 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47366 * 60.00027 * 16 14 12 18 18 H 1.48500 * 109.47196 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47227 * 299.99963 * 16 14 12 20 20 C 1.47434 * 108.70085 * 358.94262 * 11 10 8 21 21 C 1.55116 * 104.94478 * 24.00209 * 20 11 10 22 22 H 1.09001 * 110.93723 * 81.21247 * 21 20 11 23 23 C 1.52993 * 111.16571 * 205.13238 * 21 20 11 24 24 N 1.46500 * 109.47089 * 240.00175 * 2 1 3 25 25 C 1.45756 * 117.94952 * 120.01906 * 24 2 1 26 26 C 1.52904 * 110.49853 * 160.93769 * 25 24 2 27 27 C 1.53347 * 108.68532 * 50.72473 * 26 25 24 28 28 C 1.53076 * 108.42242 * 292.48235 * 27 26 25 29 29 C 1.33347 * 117.94744 * 299.99327 * 24 2 1 30 30 O 1.21282 * 118.24464 * 2.20551 * 29 24 2 31 31 H 1.08995 * 109.47190 * 60.00217 * 1 2 3 32 32 H 1.09004 * 109.46665 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46774 * 299.99670 * 1 2 3 34 34 H 0.97002 * 120.00227 * 359.97438 * 6 4 2 35 35 H 1.09003 * 109.46974 * 300.00100 * 7 6 4 36 36 H 1.08994 * 109.47210 * 59.99640 * 7 6 4 37 37 H 1.08996 * 109.88206 * 338.85823 * 10 8 7 38 38 H 1.09003 * 109.87924 * 100.03125 * 10 8 7 39 39 H 0.97007 * 119.99270 * 180.02562 * 15 14 12 40 40 H 1.09004 * 110.36428 * 142.96703 * 20 11 10 41 41 H 1.09000 * 110.36151 * 265.28723 * 20 11 10 42 42 H 1.08994 * 109.47758 * 172.17118 * 23 21 20 43 43 H 1.09000 * 109.46957 * 292.17183 * 23 21 20 44 44 H 1.09004 * 109.46908 * 52.16458 * 23 21 20 45 45 H 1.08995 * 109.29964 * 281.23999 * 25 24 2 46 46 H 1.09001 * 109.30058 * 40.81925 * 25 24 2 47 47 H 1.08997 * 109.59044 * 290.97160 * 26 25 24 48 48 H 1.08997 * 109.60802 * 170.48810 * 26 25 24 49 49 H 1.08991 * 109.67511 * 172.75158 * 27 26 25 50 50 H 1.09004 * 109.67114 * 52.21126 * 27 26 25 51 51 H 1.08999 * 109.39845 * 169.02952 * 28 27 26 52 52 H 1.08998 * 109.40193 * 288.85205 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7297 -1.6964 1.1192 6 7 1.7069 -0.2499 2.4545 7 6 2.1949 -0.9407 3.6507 8 6 1.6845 -0.2199 4.9000 9 1 0.5995 -0.1201 4.8697 10 6 2.3560 1.1621 5.0454 11 7 2.6356 1.3632 6.4748 12 6 3.2464 2.4599 7.0219 13 1 3.5679 3.2719 6.3867 14 6 3.4532 2.5273 8.3929 15 7 3.0628 1.5369 9.1668 16 14 4.2870 4.0230 9.1392 17 1 3.4879 5.2376 8.8368 18 1 4.3875 3.8510 10.6107 19 1 5.6480 4.1699 8.5634 20 6 2.1488 0.1888 7.2215 21 6 2.1317 -0.9652 6.1852 22 1 3.1266 -1.3932 6.0624 23 6 1.1178 -2.0427 6.5750 24 7 2.0183 -0.6906 -1.1962 25 6 2.8533 0.0603 -2.1254 26 6 3.6412 -0.8914 -3.0262 27 6 2.6684 -1.9061 -3.6390 28 6 2.1401 -2.8068 -2.5196 29 6 1.6714 -1.9668 -1.3664 30 8 0.9383 -2.4767 -0.5457 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.1494 0.5390 2.5436 35 1 1.8313 -1.9683 3.6506 36 1 3.2848 -0.9411 3.6508 37 1 3.2869 1.1833 4.4790 38 1 1.6831 1.9408 4.6863 39 1 3.2070 1.5843 10.1249 40 1 2.8267 -0.0467 8.0419 41 1 1.1427 0.3703 7.5997 42 1 1.0271 -2.7664 5.7651 43 1 1.4558 -2.5495 7.4789 44 1 0.1483 -1.5797 6.7590 45 1 2.2213 0.6992 -2.7421 46 1 3.5515 0.6797 -1.5626 47 1 4.3924 -1.4157 -2.4356 48 1 4.1271 -0.3249 -3.8206 49 1 3.1886 -2.5108 -4.3818 50 1 1.8378 -1.3801 -4.1096 51 1 1.3081 -3.4018 -2.8960 52 1 2.9365 -3.4704 -2.1826 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102595257.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:08 Heat of formation + Delta-G solvation = -74.260734 kcal Electronic energy + Delta-G solvation = -30475.422373 eV Core-core repulsion = 26474.270068 eV Total energy + Delta-G solvation = -4001.152305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.03415 -40.38532 -39.39386 -37.40992 -36.06041 -35.63998 -34.66157 -32.57432 -31.92781 -30.59830 -30.21002 -27.87747 -26.77710 -25.70010 -25.20713 -24.40663 -23.27093 -21.79609 -21.41322 -20.73481 -19.41174 -18.88768 -18.39203 -17.99927 -17.10975 -17.04332 -16.59307 -16.42249 -16.15030 -15.72398 -15.58101 -15.11447 -14.96075 -14.79518 -14.64445 -14.60336 -14.32802 -14.18094 -14.03593 -13.56056 -13.39209 -13.29189 -13.22656 -13.01791 -12.89038 -12.78270 -12.65166 -12.56680 -12.49317 -12.01032 -11.98115 -11.85284 -11.83679 -11.78034 -11.62728 -11.43092 -11.26342 -10.84335 -10.72975 -10.46151 -10.08269 -9.67769 -8.88112 -7.76667 -5.21419 1.46169 1.49491 1.55870 1.59499 1.69630 1.97501 2.34492 2.49725 3.32329 3.56686 3.63484 3.72862 3.82140 3.85639 3.88374 3.92232 3.95744 3.96588 4.05602 4.13275 4.35446 4.46340 4.51459 4.54612 4.59541 4.60387 4.71463 4.72750 4.76571 4.82208 4.84518 4.89444 4.95104 4.96307 5.06884 5.07870 5.13747 5.14573 5.25682 5.32686 5.36381 5.37906 5.44017 5.49517 5.50635 5.69970 5.83824 6.31530 6.51532 6.56708 7.11027 7.21502 7.33736 7.78927 8.43157 9.24847 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.002373 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.218755 B =11795.455089 C =12602.319614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 H 0.146 0.854 4 C 0.503 3.497 5 O -0.574 6.574 6 N -0.716 5.716 7 C 0.150 3.850 8 C -0.088 4.088 9 H 0.094 0.906 10 C 0.141 3.859 11 N -0.629 5.629 12 C -0.239 4.239 13 H 0.081 0.919 14 C -0.069 4.069 15 N -0.949 5.949 16 Si 0.981 3.019 17 H -0.276 1.276 18 H -0.294 1.294 19 H -0.278 1.278 20 C 0.164 3.836 21 C -0.102 4.102 22 H 0.063 0.937 23 C -0.127 4.127 24 N -0.591 5.591 25 C 0.104 3.896 26 C -0.135 4.135 27 C -0.114 4.114 28 C -0.133 4.133 29 C 0.513 3.487 30 O -0.588 6.588 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.413 0.587 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.021 0.979 38 H 0.032 0.968 39 H 0.247 0.753 40 H 0.069 0.931 41 H -0.009 1.009 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.056 0.944 48 H 0.113 0.887 49 H 0.094 0.906 50 H 0.082 0.918 51 H 0.101 0.899 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 -2.937 -28.356 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.164 0.836 4 C 0.289 3.711 5 O -0.452 6.452 6 N -0.369 5.369 7 C 0.026 3.974 8 C -0.107 4.107 9 H 0.112 0.888 10 C 0.016 3.984 11 N -0.355 5.355 12 C -0.368 4.368 13 H 0.099 0.901 14 C -0.261 4.261 15 N -0.599 5.599 16 Si 0.809 3.191 17 H -0.202 1.202 18 H -0.221 1.221 19 H -0.204 1.204 20 C 0.039 3.961 21 C -0.123 4.123 22 H 0.081 0.919 23 C -0.185 4.185 24 N -0.323 5.323 25 C -0.017 4.017 26 C -0.173 4.173 27 C -0.152 4.152 28 C -0.172 4.172 29 C 0.304 3.696 30 O -0.468 6.468 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.249 0.751 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.009 0.991 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.074 0.926 48 H 0.132 0.868 49 H 0.113 0.887 50 H 0.101 0.899 51 H 0.119 0.881 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.546 -3.814 -27.871 28.353 hybrid contribution 0.341 0.873 1.286 1.591 sum -3.205 -2.941 -26.585 26.939 Atomic orbital electron populations 1.22131 0.91506 1.03720 1.04327 1.21144 0.97137 0.97397 0.82735 0.83630 1.21434 0.79525 0.84395 0.85763 1.90650 1.39824 1.27659 1.87112 1.45871 1.53742 1.32357 1.04886 1.21065 0.97982 0.95585 0.82777 1.22314 1.00556 0.94521 0.93356 0.88825 1.21476 0.96565 0.94981 0.85423 1.44809 1.69115 1.18994 1.02559 1.19421 1.30174 0.95955 0.91271 0.90072 1.25658 1.02602 1.01314 0.96569 1.70060 1.53395 1.32815 1.03622 0.85115 0.78463 0.78789 0.76740 1.20224 1.22058 1.20391 1.21777 0.96053 0.84343 0.93949 1.22473 0.99066 0.95946 0.94769 0.91888 1.21589 0.98033 0.97414 1.01431 1.47250 1.51245 1.11400 1.22391 1.21792 0.93792 0.94542 0.91550 1.21911 0.97853 0.97860 0.99629 1.21652 0.99800 0.97251 0.96454 1.21684 1.03209 0.98458 0.93874 1.20659 0.79569 0.82008 0.87389 1.90642 1.39057 1.71112 1.46039 0.89514 0.92523 0.89750 0.75078 0.92087 0.93321 0.96129 0.94960 0.94373 0.91321 0.99090 0.91378 0.92586 0.92553 0.88687 0.90062 0.92557 0.86832 0.88740 0.89940 0.88068 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 8.98 71.98 0.65 -2.16 16 2 C 0.12 2.41 3.02 44.24 0.13 2.54 16 3 H 0.15 1.77 7.79 -2.39 -0.02 1.75 16 4 C 0.50 14.45 6.41 87.66 0.56 15.01 16 5 O -0.57 -21.88 14.56 16.84 0.25 -21.63 16 6 N -0.72 -18.77 5.32 -463.06 -2.46 -21.23 16 7 C 0.15 4.67 5.00 86.38 0.43 5.11 16 8 C -0.09 -2.94 2.45 -9.60 -0.02 -2.96 16 9 H 0.09 2.85 8.04 -2.39 -0.02 2.83 16 10 C 0.14 5.64 6.64 86.73 0.58 6.21 16 11 N -0.63 -32.59 3.40 -691.53 -2.35 -34.94 16 12 C -0.24 -13.47 10.27 84.03 0.86 -12.61 16 13 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 14 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 15 N -0.95 -57.16 10.09 21.65 0.22 -56.94 16 16 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 C 0.16 8.16 5.37 86.93 0.47 8.63 16 21 C -0.10 -3.89 3.10 -9.33 -0.03 -3.92 16 22 H 0.06 2.49 8.05 -2.39 -0.02 2.47 16 23 C -0.13 -3.98 9.31 71.98 0.67 -3.31 16 24 N -0.59 -11.34 2.61 -806.86 -2.10 -13.44 16 25 C 0.10 1.08 6.25 86.49 0.54 1.62 16 26 C -0.13 -1.14 6.02 30.68 0.18 -0.95 16 27 C -0.11 -0.97 6.03 30.74 0.19 -0.78 16 28 C -0.13 -2.21 6.03 29.71 0.18 -2.04 16 29 C 0.51 12.73 6.12 87.71 0.54 13.26 16 30 O -0.59 -20.13 12.86 16.83 0.22 -19.91 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.45 5.84 -2.39 -0.01 1.43 16 33 H 0.08 1.20 7.57 -2.38 -0.02 1.18 16 34 H 0.41 8.48 7.82 -92.71 -0.73 7.76 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 1.70 8.01 -2.39 -0.02 1.68 16 37 H 0.02 0.84 7.73 -2.39 -0.02 0.83 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 40 H 0.07 3.95 5.87 -2.38 -0.01 3.94 16 41 H -0.01 -0.47 7.99 -2.39 -0.02 -0.49 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 45 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.08 0.77 8.04 -2.39 -0.02 0.75 16 47 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 48 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.08 0.54 8.13 -2.39 -0.02 0.52 16 51 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -81.79 400.81 2.35 -79.44 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.17 Total: 20.66 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 6.39 Total: 20.17 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -6.70 Total: -126.55 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: 0.46 Total: -41.54 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -81.79 2.35 -79.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102595257.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.180 kcal (2) G-P(sol) polarization free energy of solvation -81.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds