Wall clock time and date at job start Tue Mar 31 2020 19:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.91656 * 2 1 4 4 C 1.54908 * 111.00021 * 236.10175 * 2 1 3 5 5 N 1.47423 * 104.83357 * 204.91611 * 4 2 1 6 6 C 1.34777 * 125.65491 * 204.09186 * 5 4 2 7 7 O 1.21281 * 120.00351 * 180.02562 * 6 5 4 8 8 C 1.50706 * 119.99592 * 0.04362 * 6 5 4 9 9 C 1.54267 * 110.02894 * 297.16586 * 8 6 5 10 10 C 1.54893 * 104.18854 * 217.10454 * 9 8 6 11 11 C 1.54886 * 102.75187 * 37.94649 * 10 9 8 12 12 C 1.53870 * 110.03071 * 179.97438 * 8 6 5 13 13 C 1.47023 * 108.70235 * 24.12824 * 5 4 2 14 14 C 1.54330 * 107.27020 * 358.94091 * 13 5 4 15 15 H 1.09002 * 110.71820 * 96.34389 * 14 13 5 16 16 C 1.52997 * 110.72125 * 219.44185 * 14 13 5 17 17 N 1.46899 * 109.47254 * 293.54572 * 16 14 13 18 18 C 1.46904 * 111.00029 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.46800 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00338 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99855 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00193 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00238 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00205 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99909 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00181 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47201 * 59.99764 * 26 24 22 28 28 H 1.48506 * 109.47027 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47090 * 299.99421 * 26 24 22 30 30 H 1.09003 * 109.46772 * 296.09590 * 1 2 3 31 31 H 1.09001 * 109.47037 * 56.09370 * 1 2 3 32 32 H 1.08999 * 109.47466 * 176.09471 * 1 2 3 33 33 H 1.09003 * 110.37026 * 86.07782 * 4 2 1 34 34 H 1.08997 * 110.46466 * 323.79981 * 4 2 1 35 35 H 1.08998 * 110.01452 * 58.60481 * 8 6 5 36 36 H 1.08991 * 110.48609 * 335.78007 * 9 8 6 37 37 H 1.09001 * 110.48551 * 98.42968 * 9 8 6 38 38 H 1.09005 * 110.75779 * 279.62361 * 10 9 8 39 39 H 1.09003 * 110.74888 * 156.25977 * 10 9 8 40 40 H 1.08999 * 110.48513 * 203.37836 * 11 10 9 41 41 H 1.08996 * 110.48724 * 80.73316 * 11 10 9 42 42 H 1.09003 * 110.03521 * 238.56651 * 12 8 6 43 43 H 1.09001 * 110.03335 * 0.02562 * 12 8 6 44 44 H 1.08993 * 109.88798 * 239.52640 * 13 5 4 45 45 H 1.09002 * 110.01431 * 118.42977 * 13 5 4 46 46 H 1.09002 * 109.47153 * 173.54568 * 16 14 13 47 47 H 1.09001 * 109.46832 * 53.54759 * 16 14 13 48 48 H 1.00908 * 110.99847 * 56.04959 * 17 16 14 49 49 H 1.08995 * 109.47167 * 300.00240 * 18 17 16 50 50 H 1.09003 * 109.46442 * 60.00214 * 18 17 16 51 51 H 0.97000 * 119.99567 * 0.02562 * 21 19 18 52 52 H 0.96998 * 120.00315 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0851 -0.8066 -1.2004 5 7 3.4270 -1.2431 -0.7735 6 6 4.4475 -1.5616 -1.5942 7 8 5.5126 -1.9101 -1.1305 8 6 4.2652 -1.4844 -3.0882 9 6 3.1813 -2.4845 -3.5406 10 6 3.7012 -3.0198 -4.8979 11 6 5.2277 -3.1297 -4.6599 12 6 5.5665 -1.8941 -3.7998 13 6 3.4674 -1.2743 0.6958 14 6 2.0861 -0.8080 1.2021 15 1 1.4478 -1.6633 1.4237 16 6 2.2350 0.0874 2.4338 17 7 2.7630 -0.7036 3.5533 18 6 2.9200 0.1254 4.7559 19 6 3.4630 -0.7183 5.8802 20 8 3.6966 -1.8944 5.6977 21 7 3.6890 -0.1660 7.0887 22 6 4.1834 -0.9334 8.1115 23 1 4.3914 -1.9806 7.9490 24 6 4.4159 -0.3641 9.3575 25 7 4.1623 0.9101 9.5554 26 14 5.0889 -1.4099 10.7514 27 1 6.4085 -1.9670 10.3596 28 1 5.2471 -0.5719 11.9671 29 1 4.1466 -2.5220 11.0353 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8529 32 1 -0.3634 -1.0252 -0.0700 33 1 2.1559 -0.1719 -2.0838 34 1 1.4524 -1.6703 -1.4044 35 1 3.9844 -0.4719 -3.3780 36 1 3.0878 -3.2973 -2.8205 37 1 2.2252 -1.9776 -3.6714 38 1 3.4851 -2.3139 -5.7000 39 1 3.2730 -3.9979 -5.1169 40 1 5.7651 -3.0936 -5.6076 41 1 5.4647 -4.0468 -4.1206 42 1 5.9164 -1.0808 -4.4357 43 1 6.3298 -2.1492 -3.0646 44 1 4.2425 -0.6000 1.0598 45 1 3.6661 -2.2885 1.0421 46 1 1.2619 0.4968 2.7052 47 1 2.9224 0.9029 2.2091 48 1 3.6345 -1.1468 3.3037 49 1 3.6123 0.9410 4.5470 50 1 1.9518 0.5353 5.0434 51 1 3.5018 0.7745 7.2347 52 1 4.3242 1.3074 10.4253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105749047.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:41 Heat of formation + Delta-G solvation = -91.255280 kcal Electronic energy + Delta-G solvation = -29244.424607 eV Core-core repulsion = 25242.535363 eV Total energy + Delta-G solvation = -4001.889244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.75049 -38.90765 -38.14857 -37.11212 -35.39026 -33.85871 -33.11575 -31.25568 -30.84303 -29.48404 -29.00459 -26.93865 -26.71532 -25.13203 -23.71336 -22.15006 -21.11435 -21.07934 -20.24146 -19.27183 -19.04502 -17.90016 -17.60319 -16.90891 -16.05807 -15.84461 -15.59259 -15.36695 -15.00417 -14.62765 -14.47010 -14.18455 -13.94274 -13.91630 -13.67135 -13.45453 -13.36980 -13.11352 -12.90950 -12.65561 -12.32256 -12.04245 -11.96132 -11.91010 -11.65440 -11.53872 -11.47821 -11.45906 -11.44925 -11.16715 -11.03396 -10.93083 -10.86152 -10.84761 -10.75541 -10.42366 -10.19186 -9.89393 -9.48076 -8.85320 -8.45726 -8.06662 -7.94065 -6.39732 -3.80452 2.45105 2.72873 3.22109 3.27380 3.32162 3.92126 3.95969 4.05955 4.16248 4.16998 4.23505 4.30587 4.44697 4.66523 4.77145 4.95414 4.99185 5.00626 5.04596 5.08038 5.11017 5.14913 5.16619 5.23973 5.27354 5.28994 5.30514 5.41401 5.44133 5.52954 5.55932 5.58203 5.64242 5.72345 5.75351 5.78042 5.81829 5.84601 5.93988 5.94244 5.98206 5.99048 6.11285 6.18352 6.28588 7.19340 7.30509 7.57072 7.63542 7.98609 8.08136 8.63397 9.19856 9.56235 10.07922 10.77950 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018761 B = 0.001918 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.098911 B =14591.937274 C =15645.862525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.086 0.914 4 C 0.105 3.895 5 N -0.617 5.617 6 C 0.530 3.470 7 O -0.536 6.536 8 C -0.108 4.108 9 C -0.114 4.114 10 C -0.124 4.124 11 C -0.125 4.125 12 C -0.120 4.120 13 C 0.108 3.892 14 C -0.092 4.092 15 H 0.098 0.902 16 C 0.070 3.930 17 N -0.670 5.670 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.029 0.971 48 H 0.349 0.651 49 H 0.043 0.957 50 H 0.086 0.914 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 1.182 -29.424 30.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.104 0.896 4 C -0.018 4.018 5 N -0.351 5.351 6 C 0.319 3.681 7 O -0.412 6.412 8 C -0.130 4.130 9 C -0.152 4.152 10 C -0.161 4.161 11 C -0.162 4.162 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.111 4.111 15 H 0.116 0.884 16 C -0.060 4.060 17 N -0.302 5.302 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.047 0.953 48 H 0.169 0.831 49 H 0.061 0.939 50 H 0.105 0.895 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.979 0.054 -28.963 29.792 hybrid contribution 0.915 0.831 0.725 1.433 sum -6.064 0.885 -28.238 28.895 Atomic orbital electron populations 1.21704 0.93319 1.02407 1.02390 1.22403 0.96519 0.99375 0.93750 0.89579 1.22468 0.83353 0.98286 0.97707 1.48454 1.12420 1.67195 1.07022 1.20307 0.82553 0.76531 0.88694 1.90704 1.25983 1.47168 1.77363 1.21909 0.98310 1.01525 0.91223 1.22382 0.97134 0.98122 0.97539 1.22508 0.95815 1.01108 0.96708 1.22376 0.95779 0.98444 0.99611 1.22192 0.96700 0.97878 0.99055 1.22060 0.97708 1.02394 0.79280 1.22350 0.95691 0.99273 0.93773 0.88380 1.21942 1.00375 0.93928 0.89747 1.60106 1.35727 1.31445 1.02966 1.21670 1.00974 0.94528 0.91033 1.19811 0.84880 0.88670 0.84078 1.90526 1.56809 1.16577 1.82741 1.41853 1.56974 1.12306 1.08912 1.19659 1.38988 0.95383 0.88865 0.87971 1.25263 0.97769 0.96154 0.98781 1.69605 1.48783 1.11145 1.24852 0.85910 0.79484 0.79203 0.79578 1.19917 1.20992 1.19884 0.91639 0.92378 0.92127 0.90680 0.90971 0.88639 0.91119 0.90869 0.91246 0.91280 0.91480 0.91451 0.91441 0.89138 0.91533 0.90731 0.90444 0.95329 0.83111 0.93895 0.89543 0.77469 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.31 37.16 0.35 -0.46 16 2 C -0.10 -0.72 3.09 -88.47 -0.27 -0.99 16 3 H 0.09 0.61 8.05 -51.93 -0.42 0.20 16 4 C 0.10 0.73 4.94 -2.53 -0.01 0.71 16 5 N -0.62 -6.45 3.33 -170.52 -0.57 -7.02 16 6 C 0.53 6.35 7.05 -10.98 -0.08 6.28 16 7 O -0.54 -8.74 15.54 5.56 0.09 -8.66 16 8 C -0.11 -0.89 2.60 -90.65 -0.24 -1.13 16 9 C -0.11 -0.74 5.35 -25.07 -0.13 -0.88 16 10 C -0.12 -0.72 6.91 -24.74 -0.17 -0.89 16 11 C -0.12 -0.88 6.83 -25.05 -0.17 -1.05 16 12 C -0.12 -1.03 6.40 -25.59 -0.16 -1.19 16 13 C 0.11 1.28 5.64 -3.06 -0.02 1.26 16 14 C -0.09 -0.90 2.67 -88.79 -0.24 -1.14 16 15 H 0.10 1.03 8.04 -51.93 -0.42 0.62 16 16 C 0.07 0.81 5.06 -3.83 -0.02 0.79 16 17 N -0.67 -10.76 6.13 -115.06 -0.70 -11.47 16 18 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 19 C 0.44 10.58 7.82 -10.99 -0.09 10.50 16 20 O -0.58 -16.15 15.78 5.55 0.09 -16.06 16 21 N -0.56 -14.51 5.29 -10.97 -0.06 -14.57 16 22 C -0.30 -8.48 9.68 -14.94 -0.14 -8.63 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 26 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.07 0.39 7.45 -51.93 -0.39 0.01 16 34 H 0.07 0.44 7.96 -51.93 -0.41 0.03 16 35 H 0.10 0.63 7.80 -51.93 -0.41 0.22 16 36 H 0.07 0.56 7.85 -51.93 -0.41 0.15 16 37 H 0.07 0.35 7.74 -51.93 -0.40 -0.05 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 1.02 6.39 -51.93 -0.33 0.69 16 44 H 0.07 0.88 7.76 -51.93 -0.40 0.47 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.32 8.06 -51.93 -0.42 -0.10 16 48 H 0.35 6.00 7.65 -39.29 -0.30 5.70 16 49 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 51 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 52 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 410.76 15.07 6.19 6.19 Total: -1.00 -33.81 410.76 -10.00 -43.80 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -9.21 Total: 10.95 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.52 Total: 4.55 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.61 Total: -57.11 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.17 Total: -24.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.81 -10.00 -43.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105749047.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.452 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds