Wall clock time and date at job start Tue Mar 31 2020 19:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.91991 * 2 1 4 4 C 1.54912 * 111.00806 * 236.09102 * 2 1 3 5 5 N 1.47426 * 104.83625 * 204.92068 * 4 2 1 6 6 C 1.34763 * 125.65036 * 204.16588 * 5 4 2 7 7 O 1.21284 * 120.00454 * 179.97438 * 6 5 4 8 8 C 1.50708 * 120.00138 * 359.95494 * 6 5 4 9 9 C 1.52995 * 109.47400 * 180.02562 * 8 6 5 10 10 C 1.53784 * 113.61280 * 274.13965 * 9 8 6 11 11 C 1.53959 * 87.01664 * 220.04741 * 10 9 8 12 12 C 1.53774 * 87.11257 * 25.36027 * 11 10 9 13 13 C 1.47029 * 108.69899 * 24.12685 * 5 4 2 14 14 C 1.54316 * 107.27405 * 358.94318 * 13 5 4 15 15 H 1.08997 * 110.72018 * 96.34778 * 14 13 5 16 16 C 1.52997 * 110.72270 * 219.44474 * 14 13 5 17 17 N 1.46910 * 109.46942 * 293.54951 * 16 14 13 18 18 C 1.46892 * 110.99936 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47256 * 179.97438 * 18 17 16 20 20 O 1.21293 * 119.99490 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00426 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00363 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00037 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00220 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99901 * 179.72435 * 24 22 21 26 26 Si 1.86800 * 120.00194 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72227 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72075 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72111 * 26 24 22 30 30 H 1.08997 * 109.47552 * 296.10576 * 1 2 3 31 31 H 1.09001 * 109.46589 * 56.10511 * 1 2 3 32 32 H 1.09001 * 109.47338 * 176.10133 * 1 2 3 33 33 H 1.08994 * 110.36635 * 86.07778 * 4 2 1 34 34 H 1.09005 * 110.45594 * 323.80934 * 4 2 1 35 35 H 1.09000 * 109.46890 * 300.00188 * 8 6 5 36 36 H 1.09004 * 109.46601 * 59.99785 * 8 6 5 37 37 H 1.08999 * 112.85226 * 45.32667 * 9 8 6 38 38 H 1.09004 * 113.61547 * 334.56234 * 10 9 8 39 39 H 1.08996 * 113.61944 * 105.47242 * 10 9 8 40 40 H 1.08998 * 113.53641 * 270.80592 * 11 10 9 41 41 H 1.09007 * 113.66749 * 139.93430 * 11 10 9 42 42 H 1.08998 * 113.61663 * 220.08706 * 12 11 10 43 43 H 1.09007 * 113.68760 * 89.19781 * 12 11 10 44 44 H 1.08996 * 109.87810 * 239.52232 * 13 5 4 45 45 H 1.09002 * 110.00757 * 118.43616 * 13 5 4 46 46 H 1.08996 * 109.47845 * 173.54704 * 16 14 13 47 47 H 1.09004 * 109.47220 * 53.54320 * 16 14 13 48 48 H 1.00899 * 110.99413 * 303.94688 * 17 16 14 49 49 H 1.09000 * 109.47778 * 59.99479 * 18 17 16 50 50 H 1.09007 * 109.47317 * 299.99776 * 18 17 16 51 51 H 0.97000 * 120.00112 * 359.97438 * 21 19 18 52 52 H 0.96999 * 119.99993 * 180.27541 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8068 -1.2002 5 7 3.4272 -1.2433 -0.7731 6 6 4.4481 -1.5605 -1.5936 7 8 5.5134 -1.9082 -1.1298 8 6 4.2659 -1.4838 -3.0877 9 6 5.5665 -1.8929 -3.7818 10 6 6.5634 -0.7348 -3.9543 11 6 6.8686 -1.3116 -5.3488 12 6 5.4610 -1.9299 -5.3155 13 6 3.4673 -1.2742 0.6963 14 6 2.0861 -0.8079 1.2024 15 1 1.4478 -1.6631 1.4241 16 6 2.2348 0.0878 2.4338 17 7 2.7628 -0.7031 3.5536 18 6 2.9197 0.1261 4.7559 19 6 3.4615 -0.7176 5.8809 20 8 3.6936 -1.8942 5.6990 21 7 3.6871 -0.1652 7.0893 22 6 4.1795 -0.9329 8.1129 23 1 4.3870 -1.9803 7.9508 24 6 4.4127 -0.3632 9.3586 25 7 4.8795 -1.1004 10.3412 26 14 4.0546 1.4486 9.6389 27 1 5.2681 2.2466 9.3294 28 1 2.9419 1.8760 8.7533 29 1 3.6691 1.6634 11.0568 30 1 -0.3634 0.4522 0.9228 31 1 -0.3632 0.5731 -0.8531 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1561 -0.1723 -2.0836 34 1 1.4524 -1.6705 -1.4042 35 1 3.4649 -2.1579 -3.3911 36 1 4.0083 -0.4630 -3.3703 37 1 6.0108 -2.7911 -3.3529 38 1 6.0913 0.2473 -3.9818 39 1 7.4086 -0.7802 -3.2675 40 1 7.6701 -2.0502 -5.3484 41 1 6.9932 -0.5507 -6.1193 42 1 5.4175 -2.9387 -5.7260 43 1 4.6860 -1.2762 -5.7158 44 1 4.2425 -0.5998 1.0601 45 1 3.6661 -2.2884 1.0427 46 1 1.2618 0.4971 2.7051 47 1 2.9222 0.9033 2.2091 48 1 2.1763 -1.5028 3.7396 49 1 1.9516 0.5362 5.0435 50 1 3.6121 0.9417 4.5470 51 1 3.5012 0.7756 7.2349 52 1 5.0385 -0.7036 11.2120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105980722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:22 Heat of formation + Delta-G solvation = -57.152918 kcal Electronic energy + Delta-G solvation = -28869.891826 eV Core-core repulsion = 24869.481371 eV Total energy + Delta-G solvation = -4000.410455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.53791 -39.21055 -38.44333 -37.75659 -35.45592 -33.91113 -33.10672 -31.66275 -31.29385 -30.16771 -27.23894 -26.71095 -25.89638 -25.23266 -23.81254 -23.13446 -21.66823 -20.49940 -19.72902 -19.39417 -19.32395 -18.31570 -17.09267 -16.70915 -16.15531 -16.05362 -15.62813 -15.23453 -15.03323 -14.81986 -14.56624 -14.41634 -14.14230 -13.92035 -13.62630 -13.32408 -13.14088 -12.95046 -12.81598 -12.75183 -12.62571 -12.50087 -12.22242 -12.03372 -11.96539 -11.80870 -11.75134 -11.68627 -11.20180 -11.08509 -10.92656 -10.90681 -10.80767 -10.60957 -10.58702 -10.49130 -9.96284 -9.86177 -9.55963 -8.77420 -8.58245 -8.18517 -8.13519 -6.29626 -3.81033 2.53658 2.80514 3.02644 3.07762 3.15569 3.75300 3.90616 4.10467 4.11309 4.15667 4.32031 4.35590 4.41128 4.53491 4.56527 4.72609 4.90741 4.94240 4.98525 5.00331 5.04343 5.12591 5.18178 5.22164 5.23945 5.25422 5.33446 5.38603 5.43807 5.48785 5.54821 5.58360 5.61339 5.62716 5.66694 5.74827 5.80829 5.81564 5.85676 5.94207 5.96196 6.00918 6.12185 6.17103 6.22733 7.06282 7.37476 7.55373 7.59784 8.07068 8.16206 8.61274 8.96611 9.43921 9.84349 10.83559 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.001915 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.566144 B =14618.333425 C =15695.801260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.104 3.896 5 N -0.624 5.624 6 C 0.524 3.476 7 O -0.533 6.533 8 C -0.126 4.126 9 C -0.096 4.096 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.138 4.138 13 C 0.121 3.879 14 C -0.091 4.091 15 H 0.086 0.914 16 C 0.070 3.930 17 N -0.669 5.669 18 C 0.049 3.951 19 C 0.450 3.550 20 O -0.563 6.563 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.270 1.270 29 H -0.277 1.277 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.033 0.967 47 H 0.073 0.927 48 H 0.351 0.649 49 H 0.044 0.956 50 H 0.087 0.913 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 6.493 -31.327 33.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.019 4.019 5 N -0.359 5.359 6 C 0.313 3.687 7 O -0.409 6.409 8 C -0.166 4.166 9 C -0.114 4.114 10 C -0.172 4.172 11 C -0.180 4.180 12 C -0.175 4.175 13 C -0.001 4.001 14 C -0.111 4.111 15 H 0.105 0.895 16 C -0.060 4.060 17 N -0.301 5.301 18 C -0.084 4.084 19 C 0.235 3.765 20 O -0.445 6.445 21 N -0.231 5.231 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.202 1.202 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.051 0.949 47 H 0.092 0.908 48 H 0.170 0.830 49 H 0.062 0.938 50 H 0.105 0.895 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.509 5.516 -31.204 32.566 hybrid contribution -1.267 1.637 0.828 2.230 sum -8.776 7.153 -30.376 32.417 Atomic orbital electron populations 1.21714 0.93546 1.02329 1.02313 1.22391 0.96247 0.99504 0.93879 0.89461 1.22395 0.83634 0.98203 0.97664 1.48621 1.12225 1.67489 1.07569 1.20391 0.82710 0.76931 0.88677 1.90738 1.25778 1.46763 1.77649 1.21682 1.00050 1.03446 0.91393 1.22356 0.94415 1.00247 0.94428 1.22969 0.99734 0.97580 0.96947 1.22828 0.97187 1.00400 0.97611 1.22972 0.97599 1.01229 0.95719 1.21897 0.97288 1.02699 0.78170 1.22297 0.96156 0.98571 0.94059 0.89518 1.21956 0.98028 0.95716 0.90299 1.60045 1.55549 1.09754 1.04780 1.21693 0.99957 0.96250 0.90473 1.19713 0.84701 0.88750 0.83314 1.90573 1.55331 1.16434 1.82157 1.42206 1.59477 1.10895 1.10495 1.19437 1.39089 0.96676 0.88140 0.86281 1.25042 0.97421 0.98318 0.95426 1.69624 1.44112 1.35899 1.02523 0.86661 0.78871 0.85117 0.78649 1.19603 1.19577 1.20209 0.91884 0.92287 0.92198 0.90734 0.91196 0.89023 0.89117 0.88208 0.90482 0.91092 0.90179 0.91564 0.91445 0.90172 0.90694 0.90901 0.94897 0.90840 0.82951 0.93793 0.89505 0.79714 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.31 37.16 0.35 -0.38 16 2 C -0.10 -0.66 3.09 -88.47 -0.27 -0.94 16 3 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 4 C 0.10 0.69 6.16 -2.53 -0.02 0.68 16 5 N -0.62 -6.53 3.33 -170.52 -0.57 -7.10 16 6 C 0.52 6.22 7.85 -10.99 -0.09 6.13 16 7 O -0.53 -8.76 16.12 5.55 0.09 -8.67 16 8 C -0.13 -0.97 4.53 -27.88 -0.13 -1.09 16 9 C -0.10 -0.80 3.11 -89.81 -0.28 -1.08 16 10 C -0.13 -1.13 7.65 -25.82 -0.20 -1.33 16 11 C -0.14 -0.97 8.09 -25.83 -0.21 -1.17 16 12 C -0.14 -0.86 7.64 -25.92 -0.20 -1.05 16 13 C 0.12 1.48 6.28 -3.06 -0.02 1.46 16 14 C -0.09 -0.85 2.60 -88.79 -0.23 -1.08 16 15 H 0.09 0.80 8.04 -51.93 -0.42 0.38 16 16 C 0.07 0.74 5.00 -3.82 -0.02 0.72 16 17 N -0.67 -9.96 5.94 -115.05 -0.68 -10.65 16 18 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 19 C 0.45 10.27 7.82 -10.99 -0.09 10.18 16 20 O -0.56 -15.30 15.78 5.55 0.09 -15.21 16 21 N -0.59 -14.20 5.09 -10.96 -0.06 -14.26 16 22 C -0.30 -8.72 10.16 -14.94 -0.15 -8.88 16 23 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -26.00 13.96 55.50 0.77 -25.23 16 26 Si 0.88 19.50 27.74 -169.99 -4.72 14.78 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 28 H -0.27 -5.42 6.51 56.52 0.37 -5.05 16 29 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.07 0.36 7.47 -51.93 -0.39 -0.03 16 34 H 0.07 0.41 7.99 -51.93 -0.41 -0.01 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.54 7.58 -51.93 -0.39 0.15 16 37 H 0.10 1.03 7.73 -51.93 -0.40 0.63 16 38 H 0.08 0.58 7.92 -51.93 -0.41 0.17 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.41 8.10 -51.92 -0.42 -0.01 16 44 H 0.07 1.07 7.77 -51.93 -0.40 0.66 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 48 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.37 7.78 5.76 -40.82 -0.23 7.54 16 52 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 415.86 15.07 6.27 6.27 Total: -1.00 -35.30 415.86 -9.76 -45.05 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -9.28 Total: 11.03 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.67 Total: 3.97 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.53 Total: -57.23 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.18 Total: -23.88 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.72 Total: 14.78 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.30 -9.76 -45.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105980722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.100 kcal (2) G-P(sol) polarization free energy of solvation -35.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds