Wall clock time and date at job start Tue Mar 31 2020 19:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.91991 * 2 1 4 4 C 1.54912 * 111.00806 * 236.09102 * 2 1 3 5 5 N 1.47426 * 104.83625 * 204.92068 * 4 2 1 6 6 C 1.34763 * 125.65036 * 204.16588 * 5 4 2 7 7 O 1.21284 * 120.00454 * 179.97438 * 6 5 4 8 8 C 1.50708 * 120.00138 * 359.95494 * 6 5 4 9 9 C 1.52995 * 109.47400 * 180.02562 * 8 6 5 10 10 C 1.53784 * 113.61280 * 274.13965 * 9 8 6 11 11 C 1.53959 * 87.01664 * 220.04741 * 10 9 8 12 12 C 1.53774 * 87.11257 * 25.36027 * 11 10 9 13 13 C 1.47029 * 108.69899 * 24.12685 * 5 4 2 14 14 C 1.54316 * 107.27405 * 358.94318 * 13 5 4 15 15 H 1.08997 * 110.72018 * 96.34778 * 14 13 5 16 16 C 1.52997 * 110.72270 * 219.44474 * 14 13 5 17 17 N 1.46910 * 109.46942 * 293.54951 * 16 14 13 18 18 C 1.46892 * 110.99936 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47256 * 179.97438 * 18 17 16 20 20 O 1.21293 * 119.99490 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00426 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00363 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00037 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00220 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99901 * 179.72435 * 24 22 21 26 26 Si 1.86800 * 120.00194 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72227 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72075 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72111 * 26 24 22 30 30 H 1.08997 * 109.47552 * 296.10576 * 1 2 3 31 31 H 1.09001 * 109.46589 * 56.10511 * 1 2 3 32 32 H 1.09001 * 109.47338 * 176.10133 * 1 2 3 33 33 H 1.08994 * 110.36635 * 86.07778 * 4 2 1 34 34 H 1.09005 * 110.45594 * 323.80934 * 4 2 1 35 35 H 1.09000 * 109.46890 * 300.00188 * 8 6 5 36 36 H 1.09004 * 109.46601 * 59.99785 * 8 6 5 37 37 H 1.08999 * 112.85226 * 45.32667 * 9 8 6 38 38 H 1.09004 * 113.61547 * 334.56234 * 10 9 8 39 39 H 1.08996 * 113.61944 * 105.47242 * 10 9 8 40 40 H 1.08998 * 113.53641 * 270.80592 * 11 10 9 41 41 H 1.09007 * 113.66749 * 139.93430 * 11 10 9 42 42 H 1.08998 * 113.61663 * 220.08706 * 12 11 10 43 43 H 1.09007 * 113.68760 * 89.19781 * 12 11 10 44 44 H 1.08996 * 109.87810 * 239.52232 * 13 5 4 45 45 H 1.09002 * 110.00757 * 118.43616 * 13 5 4 46 46 H 1.08996 * 109.47845 * 173.54704 * 16 14 13 47 47 H 1.09004 * 109.47220 * 53.54320 * 16 14 13 48 48 H 1.00899 * 110.99413 * 303.94688 * 17 16 14 49 49 H 1.09000 * 109.47778 * 59.99479 * 18 17 16 50 50 H 1.09007 * 109.47317 * 299.99776 * 18 17 16 51 51 H 0.97000 * 120.00112 * 359.97438 * 21 19 18 52 52 H 0.96999 * 119.99993 * 180.27541 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8068 -1.2002 5 7 3.4272 -1.2433 -0.7731 6 6 4.4481 -1.5605 -1.5936 7 8 5.5134 -1.9082 -1.1298 8 6 4.2659 -1.4838 -3.0877 9 6 5.5665 -1.8929 -3.7818 10 6 6.5634 -0.7348 -3.9543 11 6 6.8686 -1.3116 -5.3488 12 6 5.4610 -1.9299 -5.3155 13 6 3.4673 -1.2742 0.6963 14 6 2.0861 -0.8079 1.2024 15 1 1.4478 -1.6631 1.4241 16 6 2.2348 0.0878 2.4338 17 7 2.7628 -0.7031 3.5536 18 6 2.9197 0.1261 4.7559 19 6 3.4615 -0.7176 5.8809 20 8 3.6936 -1.8942 5.6990 21 7 3.6871 -0.1652 7.0893 22 6 4.1795 -0.9329 8.1129 23 1 4.3870 -1.9803 7.9508 24 6 4.4127 -0.3632 9.3586 25 7 4.8795 -1.1004 10.3412 26 14 4.0546 1.4486 9.6389 27 1 5.2681 2.2466 9.3294 28 1 2.9419 1.8760 8.7533 29 1 3.6691 1.6634 11.0568 30 1 -0.3634 0.4522 0.9228 31 1 -0.3632 0.5731 -0.8531 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1561 -0.1723 -2.0836 34 1 1.4524 -1.6705 -1.4042 35 1 3.4649 -2.1579 -3.3911 36 1 4.0083 -0.4630 -3.3703 37 1 6.0108 -2.7911 -3.3529 38 1 6.0913 0.2473 -3.9818 39 1 7.4086 -0.7802 -3.2675 40 1 7.6701 -2.0502 -5.3484 41 1 6.9932 -0.5507 -6.1193 42 1 5.4175 -2.9387 -5.7260 43 1 4.6860 -1.2762 -5.7158 44 1 4.2425 -0.5998 1.0601 45 1 3.6661 -2.2884 1.0427 46 1 1.2618 0.4971 2.7051 47 1 2.9222 0.9033 2.2091 48 1 2.1763 -1.5028 3.7396 49 1 1.9516 0.5362 5.0435 50 1 3.6121 0.9417 4.5470 51 1 3.5012 0.7756 7.2349 52 1 5.0385 -0.7036 11.2120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105980722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:21 Heat of formation + Delta-G solvation = -83.429320 kcal Electronic energy + Delta-G solvation = -28871.031256 eV Core-core repulsion = 24869.481371 eV Total energy + Delta-G solvation = -4001.549885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.35156 -40.33959 -39.78726 -38.64107 -36.67387 -35.87330 -33.94781 -33.73876 -32.03504 -31.01547 -28.59599 -27.25956 -26.62967 -26.44268 -25.09258 -24.01994 -22.41692 -21.44086 -21.07077 -20.37479 -20.22854 -20.12023 -17.99904 -17.77341 -17.38328 -17.06296 -16.87375 -16.61716 -15.95904 -15.82243 -15.60021 -15.35853 -15.31285 -15.10283 -14.77535 -14.48600 -14.20193 -14.11012 -13.95336 -13.73360 -13.50494 -13.28543 -13.23965 -13.16247 -12.98307 -12.73312 -12.70189 -12.42858 -12.39852 -12.35064 -11.98835 -11.83736 -11.63547 -11.53066 -11.51452 -11.42571 -11.24898 -11.07259 -10.77553 -10.45342 -10.26455 -9.66586 -9.29639 -8.42676 -6.04040 1.28678 1.35241 1.43880 1.64671 1.94397 2.01423 2.22170 2.70550 3.13442 3.29283 3.47654 3.56430 3.70521 3.73815 3.79605 3.85815 3.99257 4.08372 4.15004 4.23191 4.38084 4.40616 4.46305 4.47237 4.50884 4.53557 4.57240 4.68334 4.69336 4.72712 4.77832 4.86983 4.90990 4.94518 4.96115 5.01465 5.09851 5.11118 5.17008 5.19252 5.30203 5.37093 5.40163 5.51137 5.54044 5.63410 5.89127 6.04663 6.39281 6.56628 6.58448 6.86594 7.18753 7.38160 7.95449 8.75166 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.001915 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.566144 B =14618.333425 C =15695.801260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 H 0.094 0.906 4 C 0.099 3.901 5 N -0.623 5.623 6 C 0.512 3.488 7 O -0.595 6.595 8 C -0.114 4.114 9 C -0.106 4.106 10 C -0.142 4.142 11 C -0.142 4.142 12 C -0.121 4.121 13 C 0.122 3.878 14 C -0.084 4.084 15 H 0.087 0.913 16 C 0.074 3.926 17 N -0.694 5.694 18 C 0.065 3.935 19 C 0.446 3.554 20 O -0.616 6.616 21 N -0.590 5.590 22 C -0.331 4.331 23 H 0.052 0.948 24 C -0.017 4.017 25 N -0.935 5.935 26 Si 0.968 3.032 27 H -0.259 1.259 28 H -0.229 1.229 29 H -0.274 1.274 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.046 0.954 45 H 0.036 0.964 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.345 0.655 49 H 0.082 0.918 50 H 0.111 0.889 51 H 0.390 0.610 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.510 10.724 -34.294 38.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.112 0.888 4 C -0.022 4.022 5 N -0.357 5.357 6 C 0.303 3.697 7 O -0.476 6.476 8 C -0.153 4.153 9 C -0.125 4.125 10 C -0.180 4.180 11 C -0.179 4.179 12 C -0.159 4.159 13 C -0.001 4.001 14 C -0.103 4.103 15 H 0.106 0.894 16 C -0.054 4.054 17 N -0.326 5.326 18 C -0.068 4.068 19 C 0.234 3.766 20 O -0.501 6.501 21 N -0.232 5.232 22 C -0.460 4.460 23 H 0.071 0.929 24 C -0.215 4.215 25 N -0.576 5.576 26 Si 0.788 3.212 27 H -0.183 1.183 28 H -0.152 1.152 29 H -0.199 1.199 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.163 0.837 49 H 0.100 0.900 50 H 0.129 0.871 51 H 0.226 0.774 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.015 9.774 -34.218 37.252 hybrid contribution -0.131 0.158 1.743 1.755 sum -11.146 9.932 -32.475 35.742 Atomic orbital electron populations 1.21696 0.91767 1.02804 1.03174 1.22380 0.97453 0.99146 0.91818 0.88793 1.22726 0.81359 0.99341 0.98766 1.48764 1.13667 1.66610 1.06635 1.21320 0.81999 0.75741 0.90609 1.90709 1.28353 1.49574 1.78940 1.21723 1.00277 1.05707 0.87582 1.22338 0.94831 0.98966 0.96336 1.23036 0.99048 0.98424 0.97477 1.22830 0.97700 1.00558 0.96800 1.22934 0.97581 1.02014 0.93334 1.21735 0.98598 0.99921 0.79887 1.22253 0.94200 0.99041 0.94826 0.89421 1.22026 0.99165 0.95362 0.88896 1.60034 1.56843 1.10376 1.05377 1.21603 1.01795 0.95168 0.88197 1.21090 0.82556 0.88773 0.84199 1.90551 1.56962 1.19399 1.83177 1.42025 1.59803 1.11438 1.09969 1.19007 1.41576 0.94846 0.90591 0.92941 1.26166 0.96108 1.05191 0.94066 1.69813 1.45147 1.39201 1.03399 0.85325 0.80353 0.76247 0.79319 1.18316 1.15175 1.19879 0.91885 0.90433 0.92112 0.87657 0.89771 0.86481 0.86202 0.91407 0.89126 0.94097 0.90935 0.90062 0.90954 0.87787 0.93530 0.94593 0.92158 0.90492 0.83655 0.90036 0.87141 0.77396 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.31 71.98 0.67 -0.13 16 2 C -0.09 -0.86 3.09 -9.40 -0.03 -0.89 16 3 H 0.09 0.85 8.05 -2.39 -0.02 0.83 16 4 C 0.10 0.99 6.16 86.86 0.53 1.52 16 5 N -0.62 -12.70 3.33 -811.79 -2.70 -15.40 16 6 C 0.51 12.32 7.85 87.66 0.69 13.01 16 7 O -0.59 -21.22 16.12 -3.04 -0.05 -21.26 16 8 C -0.11 -1.52 4.53 29.85 0.14 -1.38 16 9 C -0.11 -1.73 3.11 -10.27 -0.03 -1.77 16 10 C -0.14 -2.38 7.65 31.18 0.24 -2.14 16 11 C -0.14 -1.76 8.09 31.18 0.25 -1.51 16 12 C -0.12 -1.23 7.64 31.12 0.24 -0.99 16 13 C 0.12 3.09 6.28 86.72 0.54 3.63 16 14 C -0.08 -1.43 2.60 -9.61 -0.03 -1.46 16 15 H 0.09 1.51 8.04 -2.39 -0.02 1.49 16 16 C 0.07 1.39 5.00 86.30 0.43 1.82 16 17 N -0.69 -20.16 5.94 -517.92 -3.07 -23.23 16 18 C 0.06 1.96 6.17 85.56 0.53 2.49 16 19 C 0.45 20.59 7.82 87.66 0.69 21.28 16 20 O -0.62 -35.34 15.78 -3.07 -0.05 -35.39 16 21 N -0.59 -28.39 5.09 -306.99 -1.56 -29.95 16 22 C -0.33 -19.85 10.16 84.04 0.85 -19.00 16 23 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 24 C -0.02 -0.95 5.50 84.92 0.47 -0.48 16 25 N -0.94 -57.37 13.96 21.66 0.30 -57.06 16 26 Si 0.97 39.19 27.74 68.60 1.90 41.09 16 27 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 28 H -0.23 -7.67 6.51 99.48 0.65 -7.02 16 29 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.37 8.08 -2.39 -0.02 0.35 16 33 H 0.11 0.47 7.47 -2.39 -0.02 0.45 16 34 H 0.08 0.66 7.99 -2.38 -0.02 0.64 16 35 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.12 0.93 7.58 -2.39 -0.02 0.91 16 37 H 0.07 1.54 7.73 -2.39 -0.02 1.52 16 38 H 0.09 1.23 7.92 -2.38 -0.02 1.21 16 39 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.10 0.60 8.10 -2.38 -0.02 0.58 16 44 H 0.05 1.42 7.77 -2.39 -0.02 1.40 16 45 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 1.42 8.06 -2.39 -0.02 1.40 16 48 H 0.34 10.66 8.43 -89.69 -0.76 9.91 16 49 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 51 H 0.39 15.38 5.76 -92.71 -0.53 14.84 16 52 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -88.54 415.86 0.51 -88.03 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -0.44 Total: 39.15 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.18 Total: 14.01 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -7.03 Total: -125.64 kcal Atomic # 8 Polarization: -56.55 SS G_CDS: -0.10 Total: -56.65 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.90 Total: 41.09 kcal Total: -88.54 0.51 -88.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105980722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.602 kcal (2) G-P(sol) polarization free energy of solvation -88.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds