Wall clock time and date at job start Tue Mar 31 2020 19:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47421 * 2 1 4 4 C 1.50697 * 109.47322 * 239.99567 * 2 1 3 5 5 O 1.21285 * 119.99923 * 240.00308 * 4 2 1 6 6 N 1.34773 * 119.99874 * 60.00248 * 4 2 1 7 7 C 1.48316 * 127.77059 * 179.89367 * 6 4 2 8 8 C 1.54381 * 104.53861 * 219.53026 * 7 6 4 9 9 H 1.09001 * 110.34359 * 95.18331 * 8 7 6 10 10 C 1.53006 * 110.34185 * 217.33517 * 8 7 6 11 11 N 1.46901 * 109.47014 * 292.12041 * 10 8 7 12 12 C 1.46902 * 110.99983 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.46978 * 180.02562 * 12 11 10 14 14 O 1.21295 * 120.00238 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00076 * 180.02562 * 13 12 11 16 16 C 1.37105 * 120.00244 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99708 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00017 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99901 * 359.71836 * 18 16 15 20 20 Si 1.86800 * 120.00194 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72210 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72333 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72143 * 20 18 16 24 24 C 1.54279 * 105.05164 * 336.25678 * 8 7 6 25 25 H 1.09000 * 110.34475 * 240.97149 * 24 8 7 26 26 C 1.53004 * 110.34402 * 118.82100 * 24 8 7 27 27 C 1.48146 * 127.84187 * 359.97399 * 6 4 2 28 28 C 1.53007 * 109.46645 * 119.99523 * 2 1 3 29 29 C 1.52998 * 117.49849 * 248.62064 * 28 2 1 30 30 C 1.53004 * 60.00252 * 252.51449 * 29 28 2 31 31 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47322 * 300.00666 * 1 2 3 33 33 H 1.09001 * 109.46763 * 60.00030 * 1 2 3 34 34 H 1.09003 * 110.38349 * 100.79801 * 7 6 4 35 35 H 1.09004 * 110.50307 * 338.31839 * 7 6 4 36 36 H 1.09002 * 109.47001 * 172.12332 * 10 8 7 37 37 H 1.08992 * 109.47083 * 52.12023 * 10 8 7 38 38 H 1.00903 * 110.99970 * 303.95843 * 11 10 8 39 39 H 1.08999 * 109.46697 * 60.00741 * 12 11 10 40 40 H 1.08993 * 109.47253 * 300.00391 * 12 11 10 41 41 H 0.97004 * 119.99652 * 359.97438 * 15 13 12 42 42 H 0.97000 * 120.00371 * 0.28325 * 19 18 16 43 43 H 1.08999 * 109.46964 * 59.99677 * 26 24 8 44 44 H 1.08993 * 109.47490 * 180.02562 * 26 24 8 45 45 H 1.09001 * 109.46550 * 300.00099 * 26 24 8 46 46 H 1.08996 * 110.40261 * 21.62600 * 27 6 4 47 47 H 1.08996 * 110.50975 * 259.24106 * 27 6 4 48 48 H 1.08996 * 115.54909 * 34.33582 * 28 2 1 49 49 H 1.09001 * 117.50014 * 359.97438 * 29 28 2 50 50 H 1.08993 * 117.49942 * 145.02554 * 29 28 2 51 51 H 1.08999 * 117.50174 * 252.51518 * 30 29 28 52 52 H 1.08997 * 117.49837 * 107.48861 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1040 -0.8079 -3.7701 8 6 2.3921 0.4308 -4.6453 9 1 3.4565 0.6653 -4.6314 10 6 1.9203 0.1893 -6.0806 11 7 2.7583 -0.8436 -6.7043 12 6 2.3330 -1.1028 -8.0863 13 6 3.2133 -2.1657 -8.6916 14 8 4.1072 -2.6584 -8.0364 15 7 3.0079 -2.5681 -9.9614 16 6 3.8083 -3.5355 -10.5120 17 1 4.6037 -3.9747 -9.9283 18 6 3.5962 -3.9506 -11.8209 19 7 2.6248 -3.4200 -12.5293 20 14 4.6872 -5.2681 -12.5714 21 1 4.2531 -5.5350 -13.9663 22 1 6.0972 -4.8018 -12.5724 23 1 4.5788 -6.5149 -11.7721 24 6 1.5824 1.5745 -3.9998 25 1 0.8499 1.9655 -4.7059 26 6 2.5184 2.6911 -3.5329 27 6 0.8734 0.9277 -2.7905 28 6 2.0399 -0.7212 1.2494 29 6 2.7418 0.1227 2.3152 30 6 3.5550 -0.8280 1.4345 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.2889 -1.3931 -4.1960 35 1 3.0006 -1.4198 -3.6704 36 1 2.0008 1.1152 -6.6501 37 1 0.8820 -0.1422 -6.0708 38 1 3.7338 -0.5886 -6.6675 39 1 2.4161 -0.1860 -8.6699 40 1 1.2977 -1.4434 -8.0900 41 1 2.2932 -2.1737 -10.4855 42 1 2.0584 -2.7356 -12.1398 43 1 3.0697 3.0840 -4.3872 44 1 1.9325 3.4905 -3.0794 45 1 3.2199 2.2941 -2.7992 46 1 0.8424 1.6230 -1.9517 47 1 -0.1351 0.6167 -3.0629 48 1 1.4309 -1.5584 1.5903 49 1 2.8407 1.1917 2.1262 50 1 2.5945 -0.1591 3.3577 51 1 3.9426 -1.7354 1.8975 52 1 4.1883 -0.3845 0.6662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105989320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:12 Heat of formation + Delta-G solvation = -51.096629 kcal Electronic energy + Delta-G solvation = -29314.805110 eV Core-core repulsion = 25314.657276 eV Total energy + Delta-G solvation = -4000.147834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.63189 -38.88591 -38.29994 -36.99764 -35.49423 -34.20082 -33.33647 -32.28251 -31.12739 -30.35724 -27.07852 -26.92929 -25.39222 -24.51861 -23.58142 -22.57094 -21.99538 -21.26681 -20.28833 -19.59582 -19.14380 -17.89469 -17.26683 -16.69975 -16.24683 -15.80642 -15.65056 -15.21466 -15.00657 -14.78600 -14.55820 -14.29633 -14.03445 -13.73954 -13.70838 -13.64049 -13.28191 -13.04109 -12.87162 -12.66938 -12.52976 -12.20278 -12.04279 -11.89120 -11.83107 -11.74654 -11.58474 -11.37206 -11.20878 -11.03722 -10.95859 -10.89060 -10.77518 -10.66487 -10.33574 -10.19392 -9.85401 -9.71359 -9.53421 -8.85377 -8.51749 -8.13442 -8.01830 -6.74348 -3.87362 2.52145 2.72312 3.32408 3.36259 3.56506 3.58330 3.85313 3.94951 4.17916 4.23024 4.25445 4.35869 4.49020 4.53441 4.65227 4.77163 4.81018 4.87383 4.92286 5.01328 5.02962 5.12532 5.13974 5.20108 5.24619 5.26419 5.34183 5.36949 5.39533 5.47761 5.53933 5.58697 5.62605 5.66845 5.68736 5.73365 5.78173 5.82932 5.85189 5.86455 5.94669 5.97805 6.01249 6.06532 6.23107 7.09686 7.42205 7.56324 7.82138 8.06615 8.09355 8.61227 8.81206 9.48730 9.89084 10.69128 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.001915 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.821975 B =14619.805203 C =15456.098640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 H 0.093 0.907 4 C 0.535 3.465 5 O -0.528 6.528 6 N -0.625 5.625 7 C 0.121 3.879 8 C -0.094 4.094 9 H 0.082 0.918 10 C 0.068 3.932 11 N -0.669 5.669 12 C 0.052 3.948 13 C 0.443 3.557 14 O -0.575 6.575 15 N -0.576 5.576 16 C -0.382 4.382 17 H 0.099 0.901 18 C -0.010 4.010 19 N -0.902 5.902 20 Si 1.091 2.909 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.104 4.104 25 H 0.088 0.912 26 C -0.143 4.143 27 C 0.103 3.897 28 C -0.136 4.136 29 C -0.183 4.183 30 C -0.155 4.155 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.350 0.650 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.375 0.625 42 H 0.261 0.739 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.107 0.893 49 H 0.092 0.908 50 H 0.094 0.906 51 H 0.094 0.906 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.780 16.044 24.147 30.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 H 0.112 0.888 4 C 0.323 3.677 5 O -0.404 6.404 6 N -0.360 5.360 7 C -0.001 4.001 8 C -0.114 4.114 9 H 0.100 0.900 10 C -0.062 4.062 11 N -0.301 5.301 12 C -0.081 4.081 13 C 0.228 3.772 14 O -0.458 6.458 15 N -0.215 5.215 16 C -0.511 4.511 17 H 0.117 0.883 18 C -0.212 4.212 19 N -0.541 5.541 20 Si 0.917 3.083 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.124 4.124 25 H 0.107 0.893 26 C -0.200 4.200 27 C -0.020 4.020 28 C -0.155 4.155 29 C -0.220 4.220 30 C -0.192 4.192 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.170 0.830 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.208 0.792 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.125 0.875 49 H 0.110 0.890 50 H 0.112 0.888 51 H 0.113 0.887 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.834 13.684 23.626 28.145 hybrid contribution -0.521 2.045 0.523 2.174 sum -7.355 15.729 24.149 29.743 Atomic orbital electron populations 1.21870 0.92598 1.03055 1.02845 1.20833 0.97531 0.99692 0.91600 0.88849 1.20244 0.80020 0.84528 0.82888 1.90739 1.37732 1.26132 1.85776 1.49102 1.51420 1.29878 1.05632 1.22331 1.01885 0.95435 0.80452 1.22172 1.00586 0.94370 0.94272 0.89953 1.22048 0.98126 0.93102 0.92878 1.60050 1.07896 1.45048 1.17149 1.21654 0.99895 0.97523 0.89027 1.19746 0.87772 0.86855 0.82799 1.90540 1.34906 1.59290 1.61109 1.41940 1.31329 1.36720 1.11472 1.20537 1.14435 1.16816 0.99296 0.88336 1.26511 0.99642 1.02079 0.92999 1.70904 1.17710 1.26695 1.38780 0.83131 0.74569 0.74486 0.76080 1.20427 1.21035 1.20975 1.22161 0.97985 0.95469 0.96744 0.89331 1.21841 0.99244 0.97413 1.01502 1.22541 0.94404 0.87554 0.97483 1.21943 0.96330 1.01549 0.95674 1.23088 1.05217 0.97452 0.96278 1.22787 0.93463 1.01106 1.01877 0.91952 0.91311 0.91602 0.90584 0.89469 0.95078 0.90810 0.83046 0.93982 0.89681 0.79175 0.92812 0.92185 0.92479 0.92622 0.90207 0.90850 0.87502 0.88991 0.88752 0.88747 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.93 37.16 0.33 -0.58 16 2 C -0.08 -0.62 2.21 -91.77 -0.20 -0.82 16 3 H 0.09 0.64 7.71 -51.93 -0.40 0.24 16 4 C 0.53 6.36 7.14 -10.99 -0.08 6.29 16 5 O -0.53 -8.57 15.35 5.55 0.09 -8.48 16 6 N -0.63 -6.50 3.31 -169.18 -0.56 -7.06 16 7 C 0.12 1.46 6.44 -2.32 -0.01 1.44 16 8 C -0.09 -0.93 2.89 -89.22 -0.26 -1.19 16 9 H 0.08 0.88 7.71 -51.93 -0.40 0.48 16 10 C 0.07 0.75 4.80 -3.82 -0.02 0.73 16 11 N -0.67 -10.38 5.96 -115.06 -0.69 -11.06 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 C 0.44 10.52 7.82 -10.99 -0.09 10.43 16 14 O -0.58 -15.95 15.78 5.54 0.09 -15.86 16 15 N -0.58 -14.61 5.28 -10.96 -0.06 -14.67 16 16 C -0.38 -10.86 9.68 -14.93 -0.14 -11.00 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 18 C -0.01 -0.28 5.50 -17.47 -0.10 -0.37 16 19 N -0.90 -25.40 13.68 55.50 0.76 -24.64 16 20 Si 1.09 24.56 29.92 -169.99 -5.09 19.47 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.10 -0.73 3.31 -89.22 -0.30 -1.02 16 25 H 0.09 0.52 7.71 -51.93 -0.40 0.12 16 26 C -0.14 -0.92 8.90 37.16 0.33 -0.59 16 27 C 0.10 0.71 4.80 -2.41 -0.01 0.70 16 28 C -0.14 -1.20 4.73 -90.61 -0.43 -1.63 16 29 C -0.18 -1.30 10.18 -26.73 -0.27 -1.57 16 30 C -0.16 -1.48 8.97 -26.73 -0.24 -1.72 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.35 5.34 -51.93 -0.28 0.07 16 34 H 0.08 0.96 7.78 -51.93 -0.40 0.56 16 35 H 0.09 1.31 7.89 -51.93 -0.41 0.90 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.77 8.02 -51.93 -0.42 0.35 16 38 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.38 8.74 6.73 -40.82 -0.27 8.46 16 42 H 0.26 7.04 6.78 -40.82 -0.28 6.76 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.41 6.28 -51.93 -0.33 0.09 16 47 H 0.07 0.44 8.01 -51.93 -0.42 0.02 16 48 H 0.11 0.95 8.11 -51.93 -0.42 0.53 16 49 H 0.09 0.56 8.05 -51.93 -0.42 0.15 16 50 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 52 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 414.29 15.07 6.24 6.24 Total: -1.00 -35.02 414.29 -9.72 -44.74 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -8.99 Total: 11.37 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.51 Total: -0.05 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.54 Total: -57.43 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.17 Total: -24.34 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.09 Total: 19.47 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.02 -9.72 -44.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105989320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.354 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds