Wall clock time and date at job start Tue Mar 31 2020 19:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47421 * 2 1 4 4 C 1.50697 * 109.47322 * 239.99567 * 2 1 3 5 5 O 1.21285 * 119.99923 * 240.00308 * 4 2 1 6 6 N 1.34773 * 119.99874 * 60.00248 * 4 2 1 7 7 C 1.48316 * 127.77059 * 179.89367 * 6 4 2 8 8 C 1.54381 * 104.53861 * 219.53026 * 7 6 4 9 9 H 1.09001 * 110.34359 * 95.18331 * 8 7 6 10 10 C 1.53006 * 110.34185 * 217.33517 * 8 7 6 11 11 N 1.46901 * 109.47014 * 292.12041 * 10 8 7 12 12 C 1.46902 * 110.99983 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.46978 * 180.02562 * 12 11 10 14 14 O 1.21295 * 120.00238 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00076 * 180.02562 * 13 12 11 16 16 C 1.37105 * 120.00244 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99708 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00017 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99901 * 359.71836 * 18 16 15 20 20 Si 1.86800 * 120.00194 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72210 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72333 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72143 * 20 18 16 24 24 C 1.54279 * 105.05164 * 336.25678 * 8 7 6 25 25 H 1.09000 * 110.34475 * 240.97149 * 24 8 7 26 26 C 1.53004 * 110.34402 * 118.82100 * 24 8 7 27 27 C 1.48146 * 127.84187 * 359.97399 * 6 4 2 28 28 C 1.53007 * 109.46645 * 119.99523 * 2 1 3 29 29 C 1.52998 * 117.49849 * 248.62064 * 28 2 1 30 30 C 1.53004 * 60.00252 * 252.51449 * 29 28 2 31 31 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47322 * 300.00666 * 1 2 3 33 33 H 1.09001 * 109.46763 * 60.00030 * 1 2 3 34 34 H 1.09003 * 110.38349 * 100.79801 * 7 6 4 35 35 H 1.09004 * 110.50307 * 338.31839 * 7 6 4 36 36 H 1.09002 * 109.47001 * 172.12332 * 10 8 7 37 37 H 1.08992 * 109.47083 * 52.12023 * 10 8 7 38 38 H 1.00903 * 110.99970 * 303.95843 * 11 10 8 39 39 H 1.08999 * 109.46697 * 60.00741 * 12 11 10 40 40 H 1.08993 * 109.47253 * 300.00391 * 12 11 10 41 41 H 0.97004 * 119.99652 * 359.97438 * 15 13 12 42 42 H 0.97000 * 120.00371 * 0.28325 * 19 18 16 43 43 H 1.08999 * 109.46964 * 59.99677 * 26 24 8 44 44 H 1.08993 * 109.47490 * 180.02562 * 26 24 8 45 45 H 1.09001 * 109.46550 * 300.00099 * 26 24 8 46 46 H 1.08996 * 110.40261 * 21.62600 * 27 6 4 47 47 H 1.08996 * 110.50975 * 259.24106 * 27 6 4 48 48 H 1.08996 * 115.54909 * 34.33582 * 28 2 1 49 49 H 1.09001 * 117.50014 * 359.97438 * 29 28 2 50 50 H 1.08993 * 117.49942 * 145.02554 * 29 28 2 51 51 H 1.08999 * 117.50174 * 252.51518 * 30 29 28 52 52 H 1.08997 * 117.49837 * 107.48861 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1040 -0.8079 -3.7701 8 6 2.3921 0.4308 -4.6453 9 1 3.4565 0.6653 -4.6314 10 6 1.9203 0.1893 -6.0806 11 7 2.7583 -0.8436 -6.7043 12 6 2.3330 -1.1028 -8.0863 13 6 3.2133 -2.1657 -8.6916 14 8 4.1072 -2.6584 -8.0364 15 7 3.0079 -2.5681 -9.9614 16 6 3.8083 -3.5355 -10.5120 17 1 4.6037 -3.9747 -9.9283 18 6 3.5962 -3.9506 -11.8209 19 7 2.6248 -3.4200 -12.5293 20 14 4.6872 -5.2681 -12.5714 21 1 4.2531 -5.5350 -13.9663 22 1 6.0972 -4.8018 -12.5724 23 1 4.5788 -6.5149 -11.7721 24 6 1.5824 1.5745 -3.9998 25 1 0.8499 1.9655 -4.7059 26 6 2.5184 2.6911 -3.5329 27 6 0.8734 0.9277 -2.7905 28 6 2.0399 -0.7212 1.2494 29 6 2.7418 0.1227 2.3152 30 6 3.5550 -0.8280 1.4345 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.2889 -1.3931 -4.1960 35 1 3.0006 -1.4198 -3.6704 36 1 2.0008 1.1152 -6.6501 37 1 0.8820 -0.1422 -6.0708 38 1 3.7338 -0.5886 -6.6675 39 1 2.4161 -0.1860 -8.6699 40 1 1.2977 -1.4434 -8.0900 41 1 2.2932 -2.1737 -10.4855 42 1 2.0584 -2.7356 -12.1398 43 1 3.0697 3.0840 -4.3872 44 1 1.9325 3.4905 -3.0794 45 1 3.2199 2.2941 -2.7992 46 1 0.8424 1.6230 -1.9517 47 1 -0.1351 0.6167 -3.0629 48 1 1.4309 -1.5584 1.5903 49 1 2.8407 1.1917 2.1262 50 1 2.5945 -0.1591 3.3577 51 1 3.9426 -1.7354 1.8975 52 1 4.1883 -0.3845 0.6662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105989320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:11 Heat of formation + Delta-G solvation = -75.729384 kcal Electronic energy + Delta-G solvation = -29315.873267 eV Core-core repulsion = 25314.657276 eV Total energy + Delta-G solvation = -4001.215991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.45567 -40.35230 -39.52911 -37.81519 -36.83718 -36.10365 -34.16694 -33.15351 -32.93902 -31.34697 -28.40609 -27.55384 -26.63367 -25.63818 -24.84992 -23.24482 -22.84011 -21.96602 -21.61883 -20.86874 -20.01033 -19.91103 -18.28555 -18.04883 -17.13598 -17.05015 -16.80255 -16.49974 -16.04267 -15.69024 -15.61728 -15.53670 -15.41716 -15.04084 -14.93824 -14.43097 -14.37294 -14.03214 -13.63500 -13.46265 -13.41438 -13.32744 -13.21167 -12.99961 -12.78956 -12.68011 -12.59148 -12.48281 -12.38741 -12.02850 -11.92920 -11.90830 -11.72176 -11.66619 -11.54644 -11.52416 -11.37131 -10.99678 -10.59414 -10.42538 -10.12318 -9.72735 -9.35663 -8.94159 -6.08004 1.51242 1.53321 1.63614 1.81542 1.92004 1.99752 2.39193 2.78651 2.91762 3.15179 3.32084 3.54265 3.55646 3.64493 3.75181 3.87342 3.91750 4.11508 4.14916 4.17654 4.23653 4.29821 4.33856 4.34556 4.43325 4.50097 4.53709 4.58491 4.62945 4.67466 4.75016 4.78414 4.87120 4.89094 4.89981 4.97343 5.03045 5.08943 5.12924 5.17664 5.18058 5.23522 5.29623 5.34149 5.51565 5.57798 5.92971 5.99537 6.31803 6.57122 6.60347 6.73619 7.17759 7.43016 7.92149 8.53744 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.001915 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.821975 B =14619.805203 C =15456.098640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.066 4.066 3 H 0.115 0.885 4 C 0.524 3.476 5 O -0.587 6.587 6 N -0.624 5.624 7 C 0.120 3.880 8 C -0.086 4.086 9 H 0.068 0.932 10 C 0.073 3.927 11 N -0.689 5.689 12 C 0.068 3.932 13 C 0.438 3.562 14 O -0.621 6.621 15 N -0.586 5.586 16 C -0.412 4.412 17 H 0.070 0.930 18 C -0.042 4.042 19 N -0.915 5.915 20 Si 1.133 2.867 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.275 1.275 24 C -0.094 4.094 25 H 0.114 0.886 26 C -0.140 4.140 27 C 0.100 3.900 28 C -0.147 4.147 29 C -0.152 4.152 30 C -0.182 4.182 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.342 0.658 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.386 0.614 42 H 0.260 0.740 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.038 0.962 46 H 0.106 0.894 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.109 0.891 50 H 0.109 0.891 51 H 0.084 0.916 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.097 19.041 24.815 32.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 H 0.133 0.867 4 C 0.314 3.686 5 O -0.466 6.466 6 N -0.357 5.357 7 C -0.003 4.003 8 C -0.106 4.106 9 H 0.087 0.913 10 C -0.056 4.056 11 N -0.322 5.322 12 C -0.064 4.064 13 C 0.226 3.774 14 O -0.507 6.507 15 N -0.226 5.226 16 C -0.541 4.541 17 H 0.088 0.912 18 C -0.240 4.240 19 N -0.554 5.554 20 Si 0.953 3.047 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.201 1.201 24 C -0.114 4.114 25 H 0.132 0.868 26 C -0.198 4.198 27 C -0.022 4.022 28 C -0.166 4.166 29 C -0.188 4.188 30 C -0.220 4.220 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.160 0.840 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.220 0.780 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.058 0.942 46 H 0.124 0.876 47 H 0.110 0.890 48 H 0.119 0.881 49 H 0.128 0.872 50 H 0.127 0.873 51 H 0.103 0.897 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.213 16.749 24.294 30.913 hybrid contribution 0.212 1.122 0.373 1.201 sum -9.001 17.871 24.667 31.763 Atomic orbital electron populations 1.21880 0.90606 1.02695 1.04685 1.20871 0.98955 0.99868 0.89039 0.86679 1.21088 0.79185 0.84062 0.84237 1.90709 1.40388 1.28860 1.86681 1.49206 1.51305 1.30621 1.04616 1.22182 0.99642 0.96229 0.82257 1.22087 1.00457 0.94507 0.93566 0.91343 1.22146 0.97757 0.92736 0.92960 1.60060 1.08094 1.47682 1.16350 1.21520 0.98924 0.96101 0.89874 1.21009 0.87445 0.86996 0.81900 1.90512 1.37063 1.61010 1.62074 1.41989 1.31532 1.36693 1.12351 1.20506 1.15084 1.18578 0.99920 0.91171 1.27805 1.00047 1.03169 0.92987 1.70970 1.18220 1.27193 1.39040 0.82639 0.73672 0.72637 0.75783 1.19505 1.19826 1.20080 1.22173 0.98001 0.94266 0.96932 0.86838 1.21832 0.99098 0.97685 1.01156 1.22862 0.94399 0.86475 0.98464 1.22044 0.95373 1.02302 0.96892 1.23166 1.01669 0.97722 0.96288 1.22725 0.94155 1.02060 1.03031 0.93461 0.89053 0.90108 0.91288 0.93950 0.92799 0.89510 0.84007 0.91107 0.87541 0.78014 0.92929 0.92423 0.90089 0.94232 0.87560 0.89040 0.88132 0.87225 0.87291 0.89697 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.93 71.98 0.64 -0.74 16 2 C -0.07 -1.00 2.21 -11.54 -0.03 -1.02 16 3 H 0.12 1.23 7.71 -2.39 -0.02 1.21 16 4 C 0.52 12.75 7.14 87.66 0.63 13.37 16 5 O -0.59 -20.62 15.35 -3.04 -0.05 -20.67 16 6 N -0.62 -12.70 3.31 -807.54 -2.67 -15.37 16 7 C 0.12 2.99 6.44 86.50 0.56 3.55 16 8 C -0.09 -1.61 2.89 -9.89 -0.03 -1.64 16 9 H 0.07 1.48 7.71 -2.39 -0.02 1.46 16 10 C 0.07 1.43 4.80 86.31 0.41 1.84 16 11 N -0.69 -21.04 5.96 -517.94 -3.08 -24.12 16 12 C 0.07 2.24 6.17 85.56 0.53 2.77 16 13 C 0.44 21.11 7.82 87.66 0.69 21.80 16 14 O -0.62 -35.68 15.78 -3.08 -0.05 -35.72 16 15 N -0.59 -30.14 5.28 -306.98 -1.62 -31.76 16 16 C -0.41 -23.99 9.68 84.04 0.81 -23.18 16 17 H 0.07 4.42 7.16 -2.91 -0.02 4.40 16 18 C -0.04 -2.30 5.50 84.92 0.47 -1.83 16 19 N -0.92 -51.31 13.68 21.66 0.30 -51.02 16 20 Si 1.13 49.40 29.92 68.60 2.05 51.45 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 24 C -0.09 -1.00 3.31 -9.89 -0.03 -1.04 16 25 H 0.11 0.75 7.71 -2.39 -0.02 0.73 16 26 C -0.14 -1.37 8.90 71.98 0.64 -0.73 16 27 C 0.10 1.03 4.80 86.53 0.42 1.45 16 28 C -0.15 -2.52 4.73 -10.79 -0.05 -2.58 16 29 C -0.15 -1.88 10.18 30.59 0.31 -1.57 16 30 C -0.18 -3.66 8.97 30.60 0.27 -3.38 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.54 5.34 -2.39 -0.01 0.53 16 34 H 0.07 1.79 7.78 -2.39 -0.02 1.77 16 35 H 0.04 1.42 7.89 -2.39 -0.02 1.40 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 1.52 8.02 -2.39 -0.02 1.50 16 38 H 0.34 11.35 8.43 -89.69 -0.76 10.60 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.39 17.96 6.73 -92.71 -0.62 17.34 16 42 H 0.26 14.02 6.78 -92.71 -0.63 13.39 16 43 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.11 0.59 6.28 -2.39 -0.02 0.58 16 47 H 0.09 0.70 8.01 -2.39 -0.02 0.68 16 48 H 0.10 1.81 8.11 -2.39 -0.02 1.79 16 49 H 0.11 0.99 8.05 -2.39 -0.02 0.97 16 50 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.07 1.71 8.10 -2.39 -0.02 1.70 16 Total: -1.00 -81.69 414.29 0.79 -80.90 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.32 Total: 39.23 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 6.24 Total: 7.08 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -7.08 Total: -122.27 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -0.10 Total: -56.39 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.45 kcal Total: -81.69 0.79 -80.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105989320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.168 kcal (2) G-P(sol) polarization free energy of solvation -81.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds