Wall clock time and date at job start Tue Mar 31 2020 19:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47278 * 2 1 4 4 N 1.46507 * 109.47442 * 119.99907 * 2 1 3 5 5 C 1.46763 * 124.35045 * 119.99510 * 4 2 1 6 6 C 1.54478 * 105.47549 * 163.00689 * 5 4 2 7 7 H 1.08996 * 110.97406 * 267.26555 * 6 5 4 8 8 C 1.50696 * 110.96865 * 143.53451 * 6 5 4 9 9 O 1.21273 * 120.00439 * 0.02562 * 8 6 5 10 10 N 1.34779 * 119.99767 * 180.02562 * 8 6 5 11 11 C 1.48149 * 127.83948 * 179.97438 * 10 8 6 12 12 C 1.54381 * 104.61711 * 219.60965 * 11 10 8 13 13 H 1.09008 * 110.43385 * 95.05295 * 12 11 10 14 14 C 1.53005 * 110.34102 * 217.25889 * 12 11 10 15 15 N 1.46496 * 109.47400 * 290.53698 * 14 12 11 16 16 C 1.36939 * 120.00077 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99728 * 359.72656 * 16 15 14 18 18 C 1.38815 * 119.99845 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99884 * 359.72042 * 18 16 15 20 20 Si 1.86798 * 119.99660 * 179.72678 * 18 16 15 21 21 H 1.48498 * 109.47416 * 59.99578 * 20 18 16 22 22 H 1.48508 * 109.46609 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46903 * 299.99163 * 20 18 16 24 24 C 1.54276 * 104.96491 * 336.13086 * 12 11 10 25 25 H 1.08999 * 110.34510 * 241.13459 * 24 12 11 26 26 C 1.53000 * 110.34458 * 118.97739 * 24 12 11 27 27 C 1.48149 * 127.84009 * 359.97438 * 10 8 6 28 28 C 1.54630 * 101.76119 * 25.41720 * 6 5 4 29 29 C 1.34415 * 124.34891 * 300.02966 * 4 2 1 30 30 O 1.21284 * 124.94271 * 0.37384 * 29 4 2 31 31 H 1.09005 * 109.47126 * 299.99417 * 1 2 3 32 32 H 1.08998 * 109.47425 * 60.00308 * 1 2 3 33 33 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47116 * 239.99664 * 2 1 3 35 35 H 1.09001 * 109.47390 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47138 * 300.00271 * 3 2 1 37 37 H 1.09001 * 109.47282 * 60.00336 * 3 2 1 38 38 H 1.09001 * 110.24297 * 44.01040 * 5 4 2 39 39 H 1.09003 * 110.32260 * 282.04801 * 5 4 2 40 40 H 1.08996 * 110.40585 * 100.82293 * 11 10 8 41 41 H 1.09005 * 110.40374 * 338.39149 * 11 10 8 42 42 H 1.09007 * 109.47086 * 170.53600 * 14 12 11 43 43 H 1.09001 * 109.46760 * 50.53677 * 14 12 11 44 44 H 0.97004 * 120.00009 * 0.02562 * 15 14 12 45 45 H 0.97000 * 119.99517 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.46999 * 60.00480 * 26 24 12 47 47 H 1.08999 * 109.47572 * 180.02562 * 26 24 12 48 48 H 1.09007 * 109.47245 * 300.00462 * 26 24 12 49 49 H 1.09001 * 110.40487 * 21.61077 * 27 10 8 50 50 H 1.08995 * 110.50393 * 259.22894 * 27 10 8 51 51 H 1.09009 * 110.48376 * 93.88168 * 28 6 5 52 52 H 1.09003 * 110.48868 * 216.52006 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8656 -1.8888 1.1728 6 6 3.4720 -1.9926 2.5898 7 1 4.4400 -1.4939 2.6373 8 6 3.5877 -3.4314 3.0227 9 8 3.2241 -4.3191 2.2808 10 7 4.0954 -3.7316 4.2346 11 6 4.2866 -5.0734 4.8329 12 6 3.8967 -4.8977 6.3163 13 1 2.8551 -5.1789 6.4719 14 6 4.8123 -5.7370 7.2098 15 7 4.5238 -7.1588 7.0062 16 6 5.2246 -8.1063 7.7035 17 1 5.9930 -7.8056 8.4003 18 6 4.9516 -9.4536 7.5102 19 7 4.0153 -9.8200 6.6608 20 14 5.9128 -10.7463 8.4558 21 1 5.7119 -10.5450 9.9133 22 1 5.4331 -12.0985 8.0725 23 1 7.3572 -10.6232 8.1335 24 6 4.0957 -3.3954 6.6052 25 1 4.8457 -3.2553 7.3836 26 6 2.7708 -2.7540 7.0228 27 6 4.5888 -2.7948 5.2708 28 6 2.4198 -1.2421 3.4387 29 6 1.7476 -0.3086 2.4562 30 8 1.0641 0.6458 2.7610 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 3.6566 -1.7770 0.4313 39 1 2.2659 -2.7722 0.9535 40 1 5.3283 -5.3826 4.7477 41 1 3.6327 -5.8007 4.3516 42 1 4.6388 -5.4769 8.2541 43 1 5.8527 -5.5371 6.9536 44 1 3.8368 -7.4290 6.3769 45 1 3.8243 -10.7614 6.5260 46 1 2.3984 -3.2428 7.9230 47 1 2.9273 -1.6940 7.2229 48 1 2.0427 -2.8682 6.2197 49 1 4.1630 -1.8027 5.1200 50 1 5.6776 -2.7467 5.2547 51 1 1.6961 -1.9426 3.8557 52 1 2.9047 -0.6750 4.2333 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106200707.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:59 Heat of formation + Delta-G solvation = -59.096594 kcal Electronic energy + Delta-G solvation = -30266.373686 eV Core-core repulsion = 26265.878948 eV Total energy + Delta-G solvation = -4000.494739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24761 -39.88853 -38.10605 -36.56448 -35.26271 -34.66494 -32.79683 -31.46317 -30.74703 -28.96752 -28.05741 -27.52485 -26.61792 -25.73946 -23.70176 -22.83434 -22.57397 -21.23400 -19.83696 -19.29198 -19.16283 -17.76595 -16.99265 -16.93405 -16.29382 -15.94967 -15.69743 -15.08291 -14.70088 -14.48378 -14.44453 -14.24434 -14.08199 -13.92338 -13.57430 -13.36158 -13.31637 -13.12604 -13.06279 -12.88428 -12.45601 -12.38590 -12.34670 -12.07177 -11.94666 -11.72411 -11.66217 -11.59089 -11.46877 -11.26421 -11.18061 -10.85942 -10.63447 -10.55061 -10.35264 -10.15132 -10.02000 -9.73608 -9.67850 -9.02077 -8.89568 -8.71755 -6.94588 -5.77102 -3.06646 2.28868 2.44886 2.54607 2.88629 3.43461 3.47776 3.49131 3.86366 3.98542 4.27448 4.45641 4.51589 4.55989 4.60042 4.68881 4.70795 4.83803 4.84802 4.88713 5.10760 5.11506 5.25705 5.28638 5.30429 5.37207 5.42448 5.45154 5.47265 5.51099 5.51837 5.56403 5.58335 5.70897 5.75002 5.83606 5.91951 5.94586 6.02005 6.08275 6.15408 6.18162 6.30028 6.36323 6.45703 6.68396 6.80400 6.80997 7.50627 7.68032 7.88257 8.03323 8.41185 9.52333 10.09293 10.43399 11.45421 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.002228 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.194987 B =12561.675707 C =13150.590141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.152 3.848 3 C -0.167 4.167 4 N -0.616 5.616 5 C 0.116 3.884 6 C -0.119 4.119 7 H 0.115 0.885 8 C 0.543 3.457 9 O -0.534 6.534 10 N -0.617 5.617 11 C 0.115 3.885 12 C -0.103 4.103 13 H 0.083 0.917 14 C 0.163 3.837 15 N -0.733 5.733 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.101 4.101 25 H 0.090 0.910 26 C -0.142 4.142 27 C 0.100 3.900 28 C -0.145 4.145 29 C 0.523 3.477 30 O -0.527 6.527 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.078 0.922 50 H 0.075 0.925 51 H 0.109 0.891 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 23.835 -11.080 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.050 3.950 3 C -0.225 4.225 4 N -0.350 5.350 5 C -0.007 4.007 6 C -0.141 4.141 7 H 0.133 0.867 8 C 0.330 3.670 9 O -0.411 6.411 10 N -0.350 5.350 11 C -0.006 4.006 12 C -0.123 4.123 13 H 0.101 0.899 14 C 0.035 3.965 15 N -0.377 5.377 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.121 4.121 25 H 0.108 0.892 26 C -0.200 4.200 27 C -0.023 4.023 28 C -0.185 4.185 29 C 0.311 3.689 30 O -0.404 6.404 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.096 0.904 50 H 0.093 0.907 51 H 0.128 0.872 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.335 23.829 -11.405 26.521 hybrid contribution 0.474 -1.011 0.365 1.175 sum -1.861 22.818 -11.040 25.417 Atomic orbital electron populations 1.22191 0.94575 1.02604 1.03309 1.20959 0.94629 0.93030 0.86363 1.22184 1.01247 0.95734 1.03347 1.48485 1.51385 1.28919 1.06252 1.22015 0.94625 0.88350 0.95699 1.22181 1.01134 0.94468 0.96314 0.86652 1.19564 0.77212 0.89945 0.80237 1.90749 1.49160 1.48981 1.52185 1.48992 1.61241 1.09841 1.14922 1.22487 1.02345 0.83484 0.92293 1.22399 1.01730 0.93769 0.94402 0.89863 1.20725 0.95055 0.85251 0.95440 1.42369 1.45263 0.99204 1.50904 1.19155 1.13864 0.86709 1.17615 0.91241 1.24755 0.99231 0.97111 0.99812 1.69650 1.34006 1.15812 1.38535 0.86269 0.79365 0.81137 0.79394 1.21281 1.21699 1.21274 1.22120 0.98489 0.95067 0.96403 0.89184 1.21849 0.96457 0.99982 1.01686 1.22622 0.99242 0.93341 0.87139 1.22409 0.98753 0.99026 0.98314 1.20680 0.80156 0.84461 0.83651 1.90704 1.39402 1.28840 1.81452 0.90955 0.91420 0.92317 0.89290 0.92475 0.91421 0.90974 0.89737 0.88810 0.90296 0.89650 0.95960 0.96135 0.78219 0.93406 0.91955 0.92683 0.92818 0.90355 0.90673 0.87245 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.20 37.16 0.34 -1.02 16 2 C 0.15 1.16 3.47 -67.93 -0.24 0.93 16 3 C -0.17 -1.21 9.20 37.16 0.34 -0.87 16 4 N -0.62 -5.51 2.83 -164.84 -0.47 -5.98 16 5 C 0.12 0.98 6.66 -3.12 -0.02 0.95 16 6 C -0.12 -1.00 2.87 -90.14 -0.26 -1.26 16 7 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 8 C 0.54 6.70 7.16 -10.99 -0.08 6.62 16 9 O -0.53 -8.75 15.77 5.56 0.09 -8.66 16 10 N -0.62 -7.43 3.32 -169.29 -0.56 -7.99 16 11 C 0.12 1.75 6.41 -2.41 -0.02 1.73 16 12 C -0.10 -1.51 2.75 -89.23 -0.24 -1.75 16 13 H 0.08 1.33 7.71 -51.92 -0.40 0.93 16 14 C 0.16 3.02 5.38 -4.04 -0.02 2.99 16 15 N -0.73 -17.91 5.48 -59.91 -0.33 -18.24 16 16 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 20 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 C -0.10 -1.06 3.30 -89.20 -0.29 -1.35 16 25 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 26 C -0.14 -1.36 8.91 37.16 0.33 -1.02 16 27 C 0.10 0.90 6.38 -2.39 -0.02 0.88 16 28 C -0.14 -1.23 5.56 -26.74 -0.15 -1.38 16 29 C 0.52 5.56 7.41 -10.86 -0.08 5.48 16 30 O -0.53 -7.22 15.12 5.55 0.08 -7.13 16 31 H 0.07 0.75 6.77 -51.93 -0.35 0.39 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.69 6.80 -51.93 -0.35 0.34 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.96 6.96 -51.93 -0.36 0.59 16 40 H 0.08 1.27 7.75 -51.93 -0.40 0.86 16 41 H 0.08 1.52 7.88 -51.93 -0.41 1.11 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.38 7.98 -51.93 -0.41 -0.03 16 44 H 0.38 9.99 7.61 -40.82 -0.31 9.68 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.53 5.19 -51.93 -0.27 0.26 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.11 1.02 7.89 -51.92 -0.41 0.61 16 52 H 0.11 0.75 6.83 -51.93 -0.35 0.39 16 LS Contribution 407.44 15.07 6.14 6.14 Total: -1.00 -33.82 407.44 -9.04 -42.86 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -9.05 Total: 5.48 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.65 Total: 3.67 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.63 Total: -59.58 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.17 Total: -15.79 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.82 -9.04 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106200707.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.235 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds