Wall clock time and date at job start Tue Mar 31 2020 19:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47278 * 2 1 4 4 N 1.46507 * 109.47442 * 119.99907 * 2 1 3 5 5 C 1.46763 * 124.35045 * 119.99510 * 4 2 1 6 6 C 1.54478 * 105.47549 * 163.00689 * 5 4 2 7 7 H 1.08996 * 110.97406 * 267.26555 * 6 5 4 8 8 C 1.50696 * 110.96865 * 143.53451 * 6 5 4 9 9 O 1.21273 * 120.00439 * 0.02562 * 8 6 5 10 10 N 1.34779 * 119.99767 * 180.02562 * 8 6 5 11 11 C 1.48149 * 127.83948 * 179.97438 * 10 8 6 12 12 C 1.54381 * 104.61711 * 219.60965 * 11 10 8 13 13 H 1.09008 * 110.43385 * 95.05295 * 12 11 10 14 14 C 1.53005 * 110.34102 * 217.25889 * 12 11 10 15 15 N 1.46496 * 109.47400 * 290.53698 * 14 12 11 16 16 C 1.36939 * 120.00077 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99728 * 359.72656 * 16 15 14 18 18 C 1.38815 * 119.99845 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99884 * 359.72042 * 18 16 15 20 20 Si 1.86798 * 119.99660 * 179.72678 * 18 16 15 21 21 H 1.48498 * 109.47416 * 59.99578 * 20 18 16 22 22 H 1.48508 * 109.46609 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46903 * 299.99163 * 20 18 16 24 24 C 1.54276 * 104.96491 * 336.13086 * 12 11 10 25 25 H 1.08999 * 110.34510 * 241.13459 * 24 12 11 26 26 C 1.53000 * 110.34458 * 118.97739 * 24 12 11 27 27 C 1.48149 * 127.84009 * 359.97438 * 10 8 6 28 28 C 1.54630 * 101.76119 * 25.41720 * 6 5 4 29 29 C 1.34415 * 124.34891 * 300.02966 * 4 2 1 30 30 O 1.21284 * 124.94271 * 0.37384 * 29 4 2 31 31 H 1.09005 * 109.47126 * 299.99417 * 1 2 3 32 32 H 1.08998 * 109.47425 * 60.00308 * 1 2 3 33 33 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47116 * 239.99664 * 2 1 3 35 35 H 1.09001 * 109.47390 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47138 * 300.00271 * 3 2 1 37 37 H 1.09001 * 109.47282 * 60.00336 * 3 2 1 38 38 H 1.09001 * 110.24297 * 44.01040 * 5 4 2 39 39 H 1.09003 * 110.32260 * 282.04801 * 5 4 2 40 40 H 1.08996 * 110.40585 * 100.82293 * 11 10 8 41 41 H 1.09005 * 110.40374 * 338.39149 * 11 10 8 42 42 H 1.09007 * 109.47086 * 170.53600 * 14 12 11 43 43 H 1.09001 * 109.46760 * 50.53677 * 14 12 11 44 44 H 0.97004 * 120.00009 * 0.02562 * 15 14 12 45 45 H 0.97000 * 119.99517 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.46999 * 60.00480 * 26 24 12 47 47 H 1.08999 * 109.47572 * 180.02562 * 26 24 12 48 48 H 1.09007 * 109.47245 * 300.00462 * 26 24 12 49 49 H 1.09001 * 110.40487 * 21.61077 * 27 10 8 50 50 H 1.08995 * 110.50393 * 259.22894 * 27 10 8 51 51 H 1.09009 * 110.48376 * 93.88168 * 28 6 5 52 52 H 1.09003 * 110.48868 * 216.52006 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8656 -1.8888 1.1728 6 6 3.4720 -1.9926 2.5898 7 1 4.4400 -1.4939 2.6373 8 6 3.5877 -3.4314 3.0227 9 8 3.2241 -4.3191 2.2808 10 7 4.0954 -3.7316 4.2346 11 6 4.2866 -5.0734 4.8329 12 6 3.8967 -4.8977 6.3163 13 1 2.8551 -5.1789 6.4719 14 6 4.8123 -5.7370 7.2098 15 7 4.5238 -7.1588 7.0062 16 6 5.2246 -8.1063 7.7035 17 1 5.9930 -7.8056 8.4003 18 6 4.9516 -9.4536 7.5102 19 7 4.0153 -9.8200 6.6608 20 14 5.9128 -10.7463 8.4558 21 1 5.7119 -10.5450 9.9133 22 1 5.4331 -12.0985 8.0725 23 1 7.3572 -10.6232 8.1335 24 6 4.0957 -3.3954 6.6052 25 1 4.8457 -3.2553 7.3836 26 6 2.7708 -2.7540 7.0228 27 6 4.5888 -2.7948 5.2708 28 6 2.4198 -1.2421 3.4387 29 6 1.7476 -0.3086 2.4562 30 8 1.0641 0.6458 2.7610 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 3.6566 -1.7770 0.4313 39 1 2.2659 -2.7722 0.9535 40 1 5.3283 -5.3826 4.7477 41 1 3.6327 -5.8007 4.3516 42 1 4.6388 -5.4769 8.2541 43 1 5.8527 -5.5371 6.9536 44 1 3.8368 -7.4290 6.3769 45 1 3.8243 -10.7614 6.5260 46 1 2.3984 -3.2428 7.9230 47 1 2.9273 -1.6940 7.2229 48 1 2.0427 -2.8682 6.2197 49 1 4.1630 -1.8027 5.1200 50 1 5.6776 -2.7467 5.2547 51 1 1.6961 -1.9426 3.8557 52 1 2.9047 -0.6750 4.2333 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106200707.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:58 Heat of formation + Delta-G solvation = -81.243868 kcal Electronic energy + Delta-G solvation = -30267.334064 eV Core-core repulsion = 26265.878948 eV Total energy + Delta-G solvation = -4001.455117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.06494 -40.84557 -39.18249 -37.40291 -36.44014 -35.93251 -34.07238 -32.98445 -31.63938 -30.35267 -28.80743 -28.12710 -27.42265 -27.20494 -25.27874 -23.75353 -23.44147 -22.44579 -20.96088 -20.19511 -19.96073 -19.10531 -18.44416 -17.65876 -17.23564 -17.02473 -16.66216 -16.39966 -15.98671 -15.50930 -15.47946 -15.23957 -15.11579 -14.81470 -14.73333 -14.63288 -14.29627 -14.20980 -13.95330 -13.76348 -13.68149 -13.28175 -13.06620 -13.01219 -12.95082 -12.80244 -12.69173 -12.60930 -12.41911 -12.35157 -12.21333 -12.15145 -12.07336 -11.95438 -11.71426 -11.54265 -11.37940 -11.07864 -10.91008 -10.61439 -9.77845 -9.72968 -8.98501 -7.93651 -5.22670 1.46207 1.47641 1.50812 1.53562 1.56898 1.73375 2.05059 2.56987 3.09040 3.28635 3.39881 3.47669 3.61752 3.75203 3.79551 3.87385 3.97471 4.08725 4.09548 4.24243 4.27875 4.28905 4.40180 4.48311 4.49243 4.55200 4.61891 4.63968 4.71308 4.73966 4.79141 4.81918 4.86590 4.89353 4.89797 4.91981 4.96486 5.08433 5.11078 5.21020 5.27359 5.29942 5.32753 5.34007 5.50959 5.57491 5.63850 6.09013 6.28056 6.55576 7.04574 7.11927 7.34140 8.11283 8.32333 9.29790 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.002228 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.194987 B =12561.675707 C =13150.590141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 C -0.160 4.160 4 N -0.612 5.612 5 C 0.117 3.883 6 C -0.103 4.103 7 H 0.152 0.848 8 C 0.540 3.460 9 O -0.583 6.583 10 N -0.614 5.614 11 C 0.120 3.880 12 C -0.094 4.094 13 H 0.063 0.937 14 C 0.163 3.837 15 N -0.748 5.748 16 C -0.242 4.242 17 H 0.080 0.920 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.974 3.026 21 H -0.277 1.277 22 H -0.299 1.299 23 H -0.276 1.276 24 C -0.093 4.093 25 H 0.106 0.894 26 C -0.140 4.140 27 C 0.101 3.899 28 C -0.139 4.139 29 C 0.516 3.484 30 O -0.563 6.563 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.112 0.888 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.028 0.972 43 H 0.030 0.970 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.050 0.950 47 H 0.084 0.916 48 H 0.044 0.956 49 H 0.112 0.888 50 H 0.095 0.905 51 H 0.099 0.901 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.119 26.475 -10.859 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.042 3.958 3 C -0.218 4.218 4 N -0.345 5.345 5 C -0.006 4.006 6 C -0.125 4.125 7 H 0.170 0.830 8 C 0.329 3.671 9 O -0.463 6.463 10 N -0.346 5.346 11 C -0.003 4.003 12 C -0.114 4.114 13 H 0.082 0.918 14 C 0.036 3.964 15 N -0.391 5.391 16 C -0.374 4.374 17 H 0.097 0.903 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.803 3.197 21 H -0.203 1.203 22 H -0.225 1.225 23 H -0.202 1.202 24 C -0.113 4.113 25 H 0.124 0.876 26 C -0.197 4.197 27 C -0.021 4.021 28 C -0.179 4.179 29 C 0.305 3.695 30 O -0.443 6.443 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.063 0.937 49 H 0.130 0.870 50 H 0.113 0.887 51 H 0.117 0.883 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.359 26.529 -11.161 28.783 hybrid contribution -0.156 -1.797 0.276 1.825 sum -0.514 24.732 -10.885 27.026 Atomic orbital electron populations 1.22155 0.95204 1.01966 1.02994 1.21193 0.94224 0.93652 0.86709 1.22113 1.01641 0.95093 1.02905 1.48604 1.50893 1.28676 1.06329 1.22032 0.94836 0.87256 0.96507 1.22154 1.02885 0.91457 0.95971 0.83002 1.20278 0.75956 0.91226 0.79608 1.90734 1.51086 1.50843 1.53641 1.49031 1.61037 1.09045 1.15508 1.22164 1.00649 0.84723 0.92729 1.22223 0.99495 0.96467 0.93187 0.91834 1.20914 0.96290 0.82678 0.96487 1.42639 1.44665 1.01465 1.50296 1.19621 1.13376 0.87487 1.16927 0.90259 1.25607 1.00752 0.99414 1.01403 1.69828 1.36155 1.15579 1.40730 0.85203 0.78235 0.77930 0.78341 1.20257 1.22546 1.20237 1.22128 0.99710 0.91504 0.97948 0.87568 1.21839 0.95481 1.01576 1.00834 1.22877 1.00596 0.93783 0.84803 1.22408 0.98485 0.98481 0.98488 1.21012 0.79823 0.84215 0.84483 1.90691 1.41024 1.30487 1.82059 0.93567 0.89408 0.93072 0.86978 0.91673 0.89683 0.93555 0.87224 0.91007 0.91316 0.93539 0.95397 0.95176 0.79748 0.94148 0.93093 0.89691 0.93662 0.87021 0.88653 0.88278 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.20 71.98 0.66 -1.90 16 2 C 0.14 1.95 3.47 44.99 0.16 2.11 16 3 C -0.16 -2.01 9.20 71.98 0.66 -1.35 16 4 N -0.61 -9.97 2.83 -794.03 -2.25 -12.22 16 5 C 0.12 1.74 6.66 86.83 0.58 2.32 16 6 C -0.10 -1.45 2.87 -10.48 -0.03 -1.48 16 7 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 8 C 0.54 12.79 7.16 87.66 0.63 13.41 16 9 O -0.58 -19.61 15.77 -3.01 -0.05 -19.66 16 10 N -0.61 -13.99 3.32 -807.90 -2.68 -16.67 16 11 C 0.12 3.74 6.41 86.53 0.55 4.29 16 12 C -0.09 -2.73 2.75 -9.89 -0.03 -2.75 16 13 H 0.06 2.10 7.71 -2.38 -0.02 2.08 16 14 C 0.16 5.94 5.38 86.38 0.46 6.41 16 15 N -0.75 -37.33 5.48 -343.44 -1.88 -39.21 16 16 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 18 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 19 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 20 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 24 C -0.09 -1.71 3.30 -9.88 -0.03 -1.74 16 25 H 0.11 1.68 7.71 -2.39 -0.02 1.66 16 26 C -0.14 -2.30 8.91 71.98 0.64 -1.66 16 27 C 0.10 1.44 6.38 86.55 0.55 1.99 16 28 C -0.14 -2.01 5.56 30.59 0.17 -1.84 16 29 C 0.52 10.28 7.41 87.90 0.65 10.93 16 30 O -0.56 -15.18 15.12 -3.04 -0.05 -15.22 16 31 H 0.05 0.97 6.77 -2.38 -0.02 0.95 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.11 1.03 8.07 -2.39 -0.02 1.01 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.85 6.80 -2.39 -0.02 0.83 16 38 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.44 6.96 -2.39 -0.02 1.43 16 40 H 0.07 2.25 7.75 -2.39 -0.02 2.23 16 41 H 0.05 1.78 7.88 -2.38 -0.02 1.77 16 42 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.03 1.07 7.98 -2.39 -0.02 1.05 16 44 H 0.37 20.21 7.61 -92.71 -0.71 19.50 16 45 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 49 H 0.11 0.91 5.19 -2.39 -0.01 0.89 16 50 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.10 1.71 7.89 -2.38 -0.02 1.69 16 52 H 0.14 1.25 6.83 -2.39 -0.02 1.24 16 Total: -1.00 -77.85 407.44 2.55 -75.30 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.20 Total: 27.59 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.94 Total: 12.07 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -6.53 Total: -128.28 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.09 Total: -34.89 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -77.85 2.55 -75.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106200707.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.940 kcal (2) G-P(sol) polarization free energy of solvation -77.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds