Wall clock time and date at job start Tue Mar 31 2020 19:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21278 * 119.99807 * 2 1 4 4 N 1.34777 * 120.00065 * 179.97438 * 2 1 3 5 5 C 1.46925 * 120.63143 * 0.02596 * 4 2 1 6 6 C 1.53187 * 108.77114 * 233.58544 * 5 4 2 7 7 C 1.53038 * 109.31441 * 305.36233 * 6 5 4 8 8 C 1.53349 * 109.60688 * 61.37687 * 7 6 5 9 9 H 1.08995 * 109.47411 * 58.55146 * 8 7 6 10 10 C 1.50701 * 109.68654 * 178.74806 * 8 7 6 11 11 O 1.21286 * 120.00108 * 25.96870 * 10 8 7 12 12 N 1.34775 * 120.00058 * 205.96890 * 10 8 7 13 13 C 1.47487 * 127.03268 * 185.27734 * 12 10 8 14 14 C 1.53997 * 107.08615 * 154.51819 * 13 12 10 15 15 H 1.08997 * 110.33049 * 120.19915 * 14 13 12 16 16 C 1.53004 * 110.32795 * 242.31243 * 14 13 12 17 17 N 1.46500 * 109.46820 * 293.54593 * 16 14 13 18 18 C 1.36942 * 120.00257 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99634 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00215 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00318 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99980 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47021 * 60.00117 * 22 20 18 24 24 H 1.48504 * 109.47185 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.47124 * 300.00309 * 22 20 18 26 26 C 1.54612 * 105.04379 * 1.30170 * 14 13 12 27 27 H 1.09000 * 110.74605 * 263.33662 * 26 14 13 28 28 C 1.53006 * 110.73967 * 140.18757 * 26 14 13 29 29 C 1.48108 * 127.03515 * 4.96046 * 12 10 8 30 30 C 1.46927 * 120.62801 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.46683 * 239.99774 * 1 2 3 32 32 H 1.09001 * 109.47311 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.46949 * 119.99858 * 1 2 3 34 34 H 1.09004 * 109.58370 * 353.36511 * 5 4 2 35 35 H 1.08998 * 109.58923 * 113.79510 * 5 4 2 36 36 H 1.09004 * 109.50094 * 65.31463 * 6 5 4 37 37 H 1.09003 * 109.49729 * 185.41139 * 6 5 4 38 38 H 1.09001 * 109.46101 * 181.38891 * 7 6 5 39 39 H 1.08996 * 109.45909 * 301.36192 * 7 6 5 40 40 H 1.09007 * 109.91226 * 273.87914 * 13 12 10 41 41 H 1.09004 * 109.91407 * 35.15247 * 13 12 10 42 42 H 1.08997 * 109.46892 * 53.53748 * 16 14 13 43 43 H 1.08990 * 109.47389 * 173.54553 * 16 14 13 44 44 H 0.97005 * 120.00150 * 359.97438 * 17 16 14 45 45 H 0.96993 * 120.00227 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.46668 * 60.00323 * 28 26 14 47 47 H 1.09000 * 109.47072 * 180.02562 * 28 26 14 48 48 H 1.08997 * 109.46944 * 300.00000 * 28 26 14 49 49 H 1.09004 * 110.66325 * 337.76950 * 29 12 10 50 50 H 1.09001 * 110.66288 * 100.88472 * 29 12 10 51 51 H 1.08997 * 109.58917 * 246.20196 * 30 4 2 52 52 H 1.08996 * 109.58643 * 6.49037 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4604 -2.4476 0.0005 6 6 1.9686 -3.2992 1.1681 7 6 3.4899 -3.4341 1.0717 8 6 4.1367 -2.0471 1.1683 9 1 3.8526 -1.5785 2.1105 10 6 5.6364 -2.1807 1.1044 11 8 6.1372 -3.1322 0.5432 12 7 6.4213 -1.2428 1.6709 13 6 7.8925 -1.1604 1.6093 14 6 8.2715 0.3191 1.8071 15 1 8.9060 0.4333 2.6859 16 6 8.9847 0.8558 0.5644 17 7 10.2772 0.1828 0.4144 18 6 11.0976 0.5017 -0.6347 19 1 10.7919 1.2496 -1.3513 20 6 12.3226 -0.1356 -0.7765 21 7 12.6954 -1.0468 0.0970 22 14 13.4419 0.2999 -2.2072 23 1 13.7930 1.7413 -2.1400 24 1 14.6806 -0.5159 -2.1327 25 1 12.7416 0.0202 -3.4866 26 6 6.9269 1.0532 2.0163 27 1 6.5765 1.4911 1.0816 28 6 7.0581 2.1261 3.0992 29 6 5.9823 -0.0806 2.4772 30 6 3.6502 -1.1833 0.0000 31 1 -0.3633 -0.5139 0.8900 32 1 -0.3634 1.0277 0.0005 33 1 -0.3633 -0.5138 -0.8900 34 1 0.3922 -2.2657 0.1187 35 1 1.6427 -2.9695 -0.9389 36 1 1.7049 -2.8190 2.1105 37 1 1.5121 -4.2880 1.1229 38 1 3.8514 -4.0602 1.8875 39 1 3.7542 -3.8916 0.1183 40 1 8.3318 -1.7654 2.4025 41 1 8.2434 -1.5068 0.6371 42 1 8.3718 0.6658 -0.3167 43 1 9.1440 1.9287 0.6718 44 1 10.5520 -0.4887 1.0582 45 1 13.5512 -1.4924 -0.0023 46 1 7.8133 2.8532 2.8006 47 1 6.1002 2.6295 3.2300 48 1 7.3543 1.6596 4.0388 49 1 4.9448 0.1707 2.2567 50 1 6.1134 -0.2789 3.5410 51 1 4.0107 -1.6023 -0.9395 52 1 4.0267 -0.1670 0.1152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106393859.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:32 Heat of formation + Delta-G solvation = -91.422020 kcal Electronic energy + Delta-G solvation = -30597.171555 eV Core-core repulsion = 26595.275080 eV Total energy + Delta-G solvation = -4001.896474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.79123 -40.81840 -39.40486 -38.01337 -36.49918 -34.42168 -34.01318 -33.12705 -32.60378 -30.84368 -30.23573 -27.51452 -27.23397 -26.20344 -25.40256 -24.50883 -22.73286 -22.20498 -21.02884 -20.20630 -20.02245 -19.21221 -18.25900 -17.97627 -17.33153 -17.02873 -16.72181 -16.60146 -16.16578 -15.84945 -15.52945 -15.28164 -15.13912 -15.00904 -14.96172 -14.36505 -14.21216 -14.08375 -14.02422 -13.82365 -13.57222 -13.31978 -13.23487 -13.17882 -12.99186 -12.91903 -12.76151 -12.58167 -12.52961 -12.23186 -12.04508 -11.99004 -11.96143 -11.86857 -11.67527 -11.55305 -11.41628 -11.09177 -10.98013 -10.76879 -9.84251 -9.74052 -9.05215 -7.98940 -5.28437 1.33962 1.42881 1.46842 1.52877 1.62781 1.79493 2.07386 2.52287 3.28497 3.34548 3.47197 3.49665 3.63699 3.68139 3.74465 3.85416 4.00491 4.09002 4.11889 4.16458 4.18460 4.37969 4.38915 4.45623 4.50509 4.51622 4.58142 4.59307 4.66120 4.70319 4.72991 4.74237 4.83125 4.86025 4.88324 4.96443 4.99383 5.04569 5.09205 5.16365 5.17953 5.21655 5.32550 5.36958 5.41796 5.43373 5.51245 6.22995 6.39433 6.46651 7.00724 7.13264 7.29214 8.03597 8.27822 9.24380 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.002664 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.204710 B =10507.259022 C =10843.555878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.503 3.497 3 O -0.599 6.599 4 N -0.608 5.608 5 C 0.098 3.902 6 C -0.124 4.124 7 C -0.104 4.104 8 C -0.100 4.100 9 H 0.113 0.887 10 C 0.527 3.473 11 O -0.584 6.584 12 N -0.618 5.618 13 C 0.116 3.884 14 C -0.091 4.091 15 H 0.093 0.907 16 C 0.165 3.835 17 N -0.744 5.744 18 C -0.250 4.250 19 H 0.072 0.928 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.274 1.274 24 H -0.292 1.292 25 H -0.281 1.281 26 C -0.092 4.092 27 H 0.074 0.926 28 C -0.134 4.134 29 C 0.107 3.893 30 C 0.128 3.872 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.004 0.996 43 H 0.029 0.971 44 H 0.375 0.625 45 H 0.252 0.748 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.097 0.903 50 H 0.099 0.901 51 H 0.057 0.943 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.565 -1.018 7.946 33.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.480 6.480 4 N -0.342 5.342 5 C -0.023 4.023 6 C -0.162 4.162 7 C -0.142 4.142 8 C -0.122 4.122 9 H 0.131 0.869 10 C 0.317 3.683 11 O -0.464 6.464 12 N -0.351 5.351 13 C -0.007 4.007 14 C -0.110 4.110 15 H 0.111 0.889 16 C 0.038 3.962 17 N -0.386 5.386 18 C -0.382 4.382 19 H 0.090 0.910 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.803 3.197 23 H -0.200 1.200 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.112 4.112 27 H 0.093 0.907 28 C -0.191 4.191 29 C -0.015 4.015 30 C 0.003 3.997 31 H 0.137 0.863 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.145 0.855 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.022 0.978 43 H 0.047 0.953 44 H 0.207 0.793 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.115 0.885 50 H 0.117 0.883 51 H 0.076 0.924 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -32.030 -0.956 7.452 32.899 hybrid contribution 1.887 -0.292 -0.876 2.101 sum -30.142 -1.248 6.576 30.876 Atomic orbital electron populations 1.21981 0.87506 1.06199 1.06617 1.21796 0.92580 0.82091 0.74064 1.90720 1.72120 1.32937 1.52196 1.48250 1.05310 1.07657 1.72934 1.22174 0.98365 0.82200 0.99578 1.21925 0.92949 1.02062 0.99234 1.21480 0.96711 0.93094 1.02952 1.21648 0.88484 1.00343 1.01700 0.86867 1.20854 0.89889 0.80627 0.76974 1.90706 1.76945 1.32885 1.45865 1.49000 1.07077 1.27139 1.51869 1.21919 0.80442 0.97387 1.00931 1.22256 0.97355 0.92788 0.98628 0.88879 1.20791 0.85675 0.95155 0.94563 1.42552 1.17529 1.47611 1.30955 1.19575 0.97976 1.17263 1.03406 0.90979 1.25590 0.99789 0.99465 1.01803 1.69806 1.22742 1.30369 1.38951 0.85201 0.77902 0.77654 0.78938 1.19969 1.21815 1.20753 1.22195 0.92684 0.95701 1.00587 0.90724 1.21701 1.02860 0.97308 0.97242 1.22820 0.99540 0.83113 0.96016 1.21150 0.81692 1.00160 0.96688 0.86306 0.89381 0.86961 0.85465 0.90625 0.90040 0.87529 0.91435 0.92222 0.91862 0.94001 0.97828 0.95315 0.79339 0.93885 0.92612 0.90465 0.91139 0.88451 0.88253 0.92433 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 8.67 71.24 0.62 -0.43 16 2 C 0.50 8.82 7.81 87.66 0.68 9.51 16 3 O -0.60 -17.00 16.50 -3.02 -0.05 -17.05 16 4 N -0.61 -9.41 2.97 -818.84 -2.43 -11.84 16 5 C 0.10 0.70 6.34 86.36 0.55 1.25 16 6 C -0.12 -0.93 6.08 30.67 0.19 -0.74 16 7 C -0.10 -1.76 4.71 30.72 0.14 -1.61 16 8 C -0.10 -2.07 2.04 -11.35 -0.02 -2.09 16 9 H 0.11 1.88 7.01 -2.39 -0.02 1.86 16 10 C 0.53 16.38 6.99 87.66 0.61 16.99 16 11 O -0.58 -23.79 16.54 -3.05 -0.05 -23.84 16 12 N -0.62 -18.44 3.29 -810.08 -2.67 -21.11 16 13 C 0.12 4.22 6.30 86.53 0.54 4.77 16 14 C -0.09 -2.98 2.64 -9.91 -0.03 -3.01 16 15 H 0.09 2.97 7.85 -2.39 -0.02 2.95 16 16 C 0.16 7.01 5.35 86.38 0.46 7.47 16 17 N -0.74 -39.96 5.33 -343.46 -1.83 -41.79 16 18 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 19 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.07 -4.45 5.50 84.86 0.47 -3.99 16 21 N -0.97 -61.59 13.06 21.65 0.28 -61.30 16 22 Si 0.97 48.16 29.55 68.60 2.03 50.19 16 23 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 25 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 26 C -0.09 -2.24 3.20 -9.70 -0.03 -2.27 16 27 H 0.07 2.00 7.87 -2.39 -0.02 1.98 16 28 C -0.13 -2.51 9.16 71.98 0.66 -1.85 16 29 C 0.11 2.25 6.20 86.62 0.54 2.79 16 30 C 0.13 2.82 5.69 86.38 0.49 3.31 16 31 H 0.12 0.07 7.69 -2.39 -0.02 0.05 16 32 H 0.09 0.70 8.12 -2.39 -0.02 0.68 16 33 H 0.11 0.22 7.94 -2.39 -0.02 0.20 16 34 H 0.13 0.00 5.93 -2.39 -0.01 -0.02 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.25 7.92 -2.39 -0.02 1.23 16 40 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.04 1.92 7.53 -2.38 -0.02 1.90 16 42 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.37 21.20 7.51 -92.70 -0.70 20.50 16 45 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 47 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 49 H 0.10 1.74 6.73 -2.39 -0.02 1.73 16 50 H 0.10 1.67 8.01 -2.39 -0.02 1.65 16 51 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.08 2.06 6.83 -2.39 -0.02 2.04 16 Total: -1.00 -84.89 407.84 2.19 -82.69 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.20 Total: 27.89 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 6.71 Total: 16.15 kcal Atomic # 7 Polarization: -129.39 SS G_CDS: -6.65 Total: -136.04 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.10 Total: -40.89 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -84.89 2.19 -82.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106393859.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.728 kcal (2) G-P(sol) polarization free energy of solvation -84.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds