Wall clock time and date at job start Tue Mar 31 2020 19:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00274 * 2 1 4 4 C 1.52994 * 109.47133 * 125.00050 * 3 2 1 5 5 C 1.53010 * 109.46979 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46644 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00209 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99312 * 179.97438 * 6 5 4 9 9 C 1.47027 * 125.64322 * 180.02562 * 8 6 5 10 10 C 1.54321 * 107.26617 * 178.97928 * 9 8 6 11 11 H 1.09005 * 110.72064 * 96.35188 * 10 9 8 12 12 C 1.53006 * 110.71843 * 219.44610 * 10 9 8 13 13 N 1.46901 * 109.47014 * 293.54624 * 12 10 9 14 14 C 1.46902 * 110.99983 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46978 * 180.02562 * 14 13 12 16 16 O 1.21295 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00244 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99708 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 359.71836 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72210 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72333 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72143 * 22 20 18 26 26 C 1.55151 * 102.94663 * 337.80988 * 10 9 8 27 27 H 1.09005 * 111.00606 * 277.42945 * 26 10 9 28 28 C 1.53003 * 111.00683 * 153.57675 * 26 10 9 29 29 C 1.47421 * 125.65067 * 0.04962 * 8 6 5 30 30 H 1.08003 * 119.99974 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.00221 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99986 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.46916 * 4.99591 * 3 2 1 34 34 H 1.09002 * 109.47073 * 245.00152 * 3 2 1 35 35 H 1.08997 * 109.47166 * 60.00274 * 4 3 2 36 36 H 1.09002 * 109.47225 * 300.00010 * 4 3 2 37 37 H 1.08997 * 109.46934 * 60.00149 * 5 4 3 38 38 H 1.08988 * 109.47076 * 300.00165 * 5 4 3 39 39 H 1.09002 * 109.87786 * 59.56284 * 9 8 6 40 40 H 1.08997 * 110.01531 * 298.47251 * 9 8 6 41 41 H 1.09002 * 109.47001 * 173.54915 * 12 10 9 42 42 H 1.08992 * 109.47083 * 53.54606 * 12 10 9 43 43 H 1.00903 * 110.99970 * 303.95843 * 13 12 10 44 44 H 1.08999 * 109.46697 * 60.00741 * 14 13 12 45 45 H 1.08993 * 109.47253 * 300.00391 * 14 13 12 46 46 H 0.97004 * 119.99652 * 359.97438 * 17 15 14 47 47 H 0.97000 * 120.00371 * 0.28325 * 21 20 18 48 48 H 1.08998 * 109.46842 * 59.99987 * 28 26 10 49 49 H 1.09002 * 109.46908 * 180.02562 * 28 26 10 50 50 H 1.08998 * 109.46552 * 300.00190 * 28 26 10 51 51 H 1.08998 * 110.36629 * 322.92483 * 29 8 6 52 52 H 1.08997 * 110.36491 * 85.13985 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.8006 2.6578 1.1812 6 6 4.7571 2.6855 2.3454 7 8 4.8205 1.7388 3.1007 8 7 5.5426 3.7621 2.5466 9 6 6.5160 3.9207 3.6370 10 6 7.1952 5.2936 3.4486 11 1 6.7136 6.0503 4.0680 12 6 8.6892 5.2067 3.7672 13 7 8.8692 4.9269 5.1981 14 6 10.2947 4.8358 5.5413 15 6 10.4394 4.5480 7.0135 16 8 9.4523 4.4308 7.7085 17 7 11.6658 4.4218 7.5581 18 6 11.7975 4.1594 8.8973 19 1 10.9185 4.0543 9.5159 20 6 13.0618 4.0288 9.4586 21 7 14.1312 4.1513 8.7048 22 14 13.2413 3.6721 11.2834 23 1 14.6821 3.5733 11.6292 24 1 12.6186 4.7700 12.0660 25 1 12.5658 2.3896 11.6058 26 6 6.9715 5.5882 1.9419 27 1 7.7219 5.0873 1.3302 28 6 6.9640 7.0944 1.6728 29 6 5.5679 4.9757 1.7100 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 3.7399 0.5065 1.0920 36 1 2.4773 1.2355 2.1130 37 1 3.0960 3.4846 1.2705 38 1 4.3583 2.7548 0.2498 39 1 7.2622 3.1278 3.5860 40 1 6.0062 3.8883 4.5998 41 1 9.1693 6.1532 3.5189 42 1 9.1397 4.4059 3.1809 43 1 8.4044 5.6213 5.7636 44 1 10.7862 5.7795 5.3053 45 1 10.7560 4.0322 4.9673 46 1 12.4552 4.5159 7.0023 47 1 14.0381 4.3369 7.7573 48 1 7.9202 7.5220 1.9743 49 1 6.8050 7.2726 0.6092 50 1 6.1611 7.5613 2.2432 51 1 5.4363 4.7153 0.6598 52 1 4.7914 5.6716 2.0277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106606192.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:13 Heat of formation + Delta-G solvation = -70.543416 kcal Electronic energy + Delta-G solvation = -28361.400503 eV Core-core repulsion = 24360.409393 eV Total energy + Delta-G solvation = -4000.991110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.43918 -38.63580 -38.17484 -36.29374 -35.48973 -34.18744 -33.15449 -32.66873 -31.14113 -30.56853 -28.11392 -26.75686 -26.58657 -24.81709 -23.58377 -22.34200 -21.60577 -20.50077 -20.25277 -19.58322 -19.28993 -17.89085 -17.18717 -16.79753 -16.39252 -16.21858 -15.57482 -15.30063 -15.09481 -14.92988 -14.34993 -14.20440 -14.01032 -13.87268 -13.85415 -13.65378 -13.31137 -13.24430 -12.99635 -12.69077 -12.61244 -12.38750 -12.15403 -12.00832 -11.83732 -11.77804 -11.66066 -11.29988 -11.20128 -11.10567 -11.03975 -10.92373 -10.91292 -10.81368 -10.19013 -9.96108 -9.84936 -9.69386 -9.52946 -8.79813 -8.51471 -8.13277 -8.01333 -6.73884 -3.86896 1.90850 2.49731 2.78718 3.32758 3.36606 3.56875 3.85358 3.91524 4.12964 4.16861 4.31989 4.38379 4.48445 4.57168 4.65529 4.81010 4.88167 4.94454 4.97980 5.00789 5.02321 5.12405 5.13464 5.17679 5.22841 5.26276 5.27148 5.34443 5.39692 5.49023 5.54343 5.56319 5.63100 5.68376 5.74901 5.78975 5.84674 5.86550 5.97932 5.99770 6.03090 6.10705 6.16022 6.26244 6.39395 7.08885 7.34604 7.56497 7.82543 8.03083 8.09815 8.61732 8.81639 9.49226 9.89521 10.69613 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.001728 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.389231 B =16202.124286 C =17638.554699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.101 4.101 5 C -0.135 4.135 6 C 0.523 3.477 7 O -0.535 6.535 8 N -0.623 5.623 9 C 0.121 3.879 10 C -0.091 4.091 11 H 0.086 0.914 12 C 0.070 3.930 13 N -0.668 5.668 14 C 0.052 3.948 15 C 0.443 3.557 16 O -0.576 6.576 17 N -0.576 5.576 18 C -0.382 4.382 19 H 0.099 0.901 20 C -0.009 4.009 21 N -0.901 5.901 22 Si 1.091 2.909 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.101 4.101 27 H 0.087 0.913 28 C -0.141 4.141 29 C 0.104 3.896 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.350 0.650 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.375 0.625 47 H 0.261 0.739 48 H 0.062 0.938 49 H 0.058 0.942 50 H 0.059 0.941 51 H 0.075 0.925 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.705 3.399 -23.798 31.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.175 4.175 6 C 0.312 3.688 7 O -0.412 6.412 8 N -0.358 5.358 9 C -0.001 4.001 10 C -0.111 4.111 11 H 0.105 0.895 12 C -0.060 4.060 13 N -0.301 5.301 14 C -0.081 4.081 15 C 0.229 3.771 16 O -0.459 6.459 17 N -0.214 5.214 18 C -0.512 4.512 19 H 0.117 0.883 20 C -0.212 4.212 21 N -0.541 5.541 22 Si 0.917 3.083 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.120 4.120 27 H 0.106 0.894 28 C -0.199 4.199 29 C -0.019 4.019 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.169 0.831 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.208 0.792 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.094 0.906 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.348 1.781 -21.743 29.159 hybrid contribution -0.330 1.316 -1.703 2.177 sum -19.678 3.097 -23.445 30.765 Atomic orbital electron populations 1.23853 0.95977 1.01814 1.01789 1.22965 0.96042 0.98615 0.99306 1.20793 0.98163 0.95526 0.98711 1.21307 0.97751 0.96211 0.98669 1.21675 0.98004 1.00609 0.97196 1.20404 0.80698 0.81063 0.86664 1.90747 1.68083 1.34733 1.47629 1.48616 1.40305 1.16968 1.29916 1.21903 0.91091 0.97058 0.90014 1.22297 0.96133 0.97048 0.95582 0.89549 1.21955 0.94140 0.99656 0.90255 1.60047 1.11731 1.55042 1.03267 1.21655 0.89541 1.00592 0.96314 1.19735 0.84086 0.84725 0.88597 1.90535 1.37398 1.55319 1.62627 1.41936 1.05937 1.63649 1.09901 1.20542 0.96817 1.49483 0.84310 0.88331 1.26504 0.90541 0.95958 1.08157 1.70903 1.30126 1.45940 1.07112 0.83132 0.76246 0.76912 0.71978 1.20421 1.21040 1.20981 1.22390 0.96475 0.96854 0.96318 0.89420 1.21715 1.02615 0.93839 1.01729 1.22399 0.97611 0.86592 0.95296 0.88662 0.88567 0.87316 0.91485 0.90940 0.90937 0.90959 0.89081 0.89043 0.90676 0.90918 0.94912 0.90851 0.83079 0.93958 0.89682 0.79173 0.92806 0.91870 0.92247 0.92218 0.90638 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.25 14.32 29.02 0.42 -0.83 16 2 C -0.15 -1.03 9.52 -36.03 -0.34 -1.37 16 3 C -0.09 -0.58 5.66 -27.89 -0.16 -0.73 16 4 C -0.10 -0.82 4.49 -26.73 -0.12 -0.94 16 5 C -0.13 -1.00 4.71 -27.88 -0.13 -1.13 16 6 C 0.52 6.24 7.85 -10.98 -0.09 6.15 16 7 O -0.54 -8.93 16.31 5.56 0.09 -8.84 16 8 N -0.62 -6.60 3.33 -170.53 -0.57 -7.17 16 9 C 0.12 1.51 6.28 -3.06 -0.02 1.49 16 10 C -0.09 -0.88 2.60 -88.79 -0.23 -1.11 16 11 H 0.09 0.82 8.04 -51.93 -0.42 0.40 16 12 C 0.07 0.78 5.00 -3.82 -0.02 0.76 16 13 N -0.67 -10.44 5.93 -115.06 -0.68 -11.12 16 14 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 15 C 0.44 10.58 7.82 -10.99 -0.09 10.49 16 16 O -0.58 -15.97 15.78 5.54 0.09 -15.88 16 17 N -0.58 -14.67 5.28 -10.96 -0.06 -14.73 16 18 C -0.38 -10.91 9.68 -14.93 -0.14 -11.06 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 20 C -0.01 -0.26 5.50 -17.47 -0.10 -0.35 16 21 N -0.90 -25.47 13.68 55.50 0.76 -24.71 16 22 Si 1.09 24.60 29.92 -169.99 -5.09 19.51 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 C -0.10 -0.69 3.09 -88.48 -0.27 -0.96 16 27 H 0.09 0.60 8.05 -51.93 -0.42 0.19 16 28 C -0.14 -0.76 9.31 37.16 0.35 -0.41 16 29 C 0.10 0.70 6.16 -2.54 -0.02 0.69 16 30 H 0.10 0.53 7.84 -52.48 -0.41 0.12 16 31 H 0.10 0.53 8.06 -52.48 -0.42 0.11 16 32 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.07 0.36 7.79 -51.93 -0.40 -0.05 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.28 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.50 7.85 -51.94 -0.41 0.09 16 39 H 0.07 1.09 7.77 -51.93 -0.40 0.69 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 43 H 0.35 5.63 8.43 -39.29 -0.33 5.30 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 46 H 0.38 8.79 6.73 -40.82 -0.27 8.52 16 47 H 0.26 7.07 6.78 -40.82 -0.28 6.79 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 50 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 51 H 0.08 0.36 7.48 -51.93 -0.39 -0.03 16 52 H 0.07 0.41 7.99 -51.93 -0.41 0.00 16 LS Contribution 425.19 15.07 6.41 6.41 Total: -1.00 -35.68 425.19 -9.27 -44.94 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -9.23 Total: 10.03 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.99 Total: 1.54 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.55 Total: -57.72 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.18 Total: -24.72 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.09 Total: 19.51 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -35.68 -9.27 -44.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106606192.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.599 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds