Wall clock time and date at job start Tue Mar 31 2020 19:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00274 * 2 1 4 4 C 1.52994 * 109.47133 * 125.00050 * 3 2 1 5 5 C 1.53010 * 109.46979 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46644 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00209 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99312 * 179.97438 * 6 5 4 9 9 C 1.47027 * 125.64322 * 180.02562 * 8 6 5 10 10 C 1.54321 * 107.26617 * 178.97928 * 9 8 6 11 11 H 1.09005 * 110.72064 * 96.35188 * 10 9 8 12 12 C 1.53006 * 110.71843 * 219.44610 * 10 9 8 13 13 N 1.46901 * 109.47014 * 293.54624 * 12 10 9 14 14 C 1.46902 * 110.99983 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.46978 * 180.02562 * 14 13 12 16 16 O 1.21295 * 120.00238 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00244 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99708 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 359.71836 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72210 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72333 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72143 * 22 20 18 26 26 C 1.55151 * 102.94663 * 337.80988 * 10 9 8 27 27 H 1.09005 * 111.00606 * 277.42945 * 26 10 9 28 28 C 1.53003 * 111.00683 * 153.57675 * 26 10 9 29 29 C 1.47421 * 125.65067 * 0.04962 * 8 6 5 30 30 H 1.08003 * 119.99974 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.00221 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99986 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.46916 * 4.99591 * 3 2 1 34 34 H 1.09002 * 109.47073 * 245.00152 * 3 2 1 35 35 H 1.08997 * 109.47166 * 60.00274 * 4 3 2 36 36 H 1.09002 * 109.47225 * 300.00010 * 4 3 2 37 37 H 1.08997 * 109.46934 * 60.00149 * 5 4 3 38 38 H 1.08988 * 109.47076 * 300.00165 * 5 4 3 39 39 H 1.09002 * 109.87786 * 59.56284 * 9 8 6 40 40 H 1.08997 * 110.01531 * 298.47251 * 9 8 6 41 41 H 1.09002 * 109.47001 * 173.54915 * 12 10 9 42 42 H 1.08992 * 109.47083 * 53.54606 * 12 10 9 43 43 H 1.00903 * 110.99970 * 303.95843 * 13 12 10 44 44 H 1.08999 * 109.46697 * 60.00741 * 14 13 12 45 45 H 1.08993 * 109.47253 * 300.00391 * 14 13 12 46 46 H 0.97004 * 119.99652 * 359.97438 * 17 15 14 47 47 H 0.97000 * 120.00371 * 0.28325 * 21 20 18 48 48 H 1.08998 * 109.46842 * 59.99987 * 28 26 10 49 49 H 1.09002 * 109.46908 * 180.02562 * 28 26 10 50 50 H 1.08998 * 109.46552 * 300.00190 * 28 26 10 51 51 H 1.08998 * 110.36629 * 322.92483 * 29 8 6 52 52 H 1.08997 * 110.36491 * 85.13985 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.8006 2.6578 1.1812 6 6 4.7571 2.6855 2.3454 7 8 4.8205 1.7388 3.1007 8 7 5.5426 3.7621 2.5466 9 6 6.5160 3.9207 3.6370 10 6 7.1952 5.2936 3.4486 11 1 6.7136 6.0503 4.0680 12 6 8.6892 5.2067 3.7672 13 7 8.8692 4.9269 5.1981 14 6 10.2947 4.8358 5.5413 15 6 10.4394 4.5480 7.0135 16 8 9.4523 4.4308 7.7085 17 7 11.6658 4.4218 7.5581 18 6 11.7975 4.1594 8.8973 19 1 10.9185 4.0543 9.5159 20 6 13.0618 4.0288 9.4586 21 7 14.1312 4.1513 8.7048 22 14 13.2413 3.6721 11.2834 23 1 14.6821 3.5733 11.6292 24 1 12.6186 4.7700 12.0660 25 1 12.5658 2.3896 11.6058 26 6 6.9715 5.5882 1.9419 27 1 7.7219 5.0873 1.3302 28 6 6.9640 7.0944 1.6728 29 6 5.5679 4.9757 1.7100 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 3.7399 0.5065 1.0920 36 1 2.4773 1.2355 2.1130 37 1 3.0960 3.4846 1.2705 38 1 4.3583 2.7548 0.2498 39 1 7.2622 3.1278 3.5860 40 1 6.0062 3.8883 4.5998 41 1 9.1693 6.1532 3.5189 42 1 9.1397 4.4059 3.1809 43 1 8.4044 5.6213 5.7636 44 1 10.7862 5.7795 5.3053 45 1 10.7560 4.0322 4.9673 46 1 12.4552 4.5159 7.0023 47 1 14.0381 4.3369 7.7573 48 1 7.9202 7.5220 1.9743 49 1 6.8050 7.2726 0.6092 50 1 6.1611 7.5613 2.2432 51 1 5.4363 4.7153 0.6598 52 1 4.7914 5.6716 2.0277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106606192.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:12 Heat of formation + Delta-G solvation = -95.600219 kcal Electronic energy + Delta-G solvation = -28362.487047 eV Core-core repulsion = 24360.409393 eV Total energy + Delta-G solvation = -4002.077655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29029 -40.34223 -39.25985 -36.92561 -36.80181 -36.10862 -34.00293 -33.26166 -33.15191 -31.53493 -29.04438 -27.85471 -27.19821 -26.32675 -25.02043 -23.07827 -22.32633 -21.67126 -21.01619 -20.77714 -20.08494 -19.97940 -18.32673 -17.89797 -17.46421 -17.03602 -16.88950 -16.72194 -15.99905 -15.88099 -15.68138 -15.53132 -15.29797 -14.92660 -14.86128 -14.50061 -14.30820 -14.07801 -13.98209 -13.65787 -13.39051 -13.29269 -13.25188 -13.13211 -12.92757 -12.72613 -12.61768 -12.48254 -12.42463 -11.92867 -11.90911 -11.89470 -11.75788 -11.67031 -11.64487 -11.54280 -11.47260 -10.91180 -10.43392 -10.19560 -10.12707 -9.70107 -9.37299 -8.94575 -6.08482 1.40949 1.51122 1.53354 1.60296 1.81641 1.98931 1.99067 2.38943 2.77200 3.14997 3.28480 3.48431 3.54137 3.72051 3.83246 3.86753 4.04489 4.10686 4.19759 4.29132 4.31563 4.34713 4.37871 4.41934 4.46713 4.51386 4.58931 4.63517 4.64901 4.66418 4.72987 4.76397 4.90997 4.91715 4.92882 5.05890 5.07878 5.15528 5.20797 5.26473 5.33917 5.39255 5.50733 5.57185 5.78167 5.90306 5.91342 5.97454 6.33255 6.52873 6.56523 6.72914 7.14067 7.42402 7.91114 8.53260 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.001728 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.389231 B =16202.124286 C =17638.554699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C -0.086 4.086 4 C -0.099 4.099 5 C -0.122 4.122 6 C 0.511 3.489 7 O -0.599 6.599 8 N -0.622 5.622 9 C 0.122 3.878 10 C -0.083 4.083 11 H 0.089 0.911 12 C 0.073 3.927 13 N -0.689 5.689 14 C 0.068 3.932 15 C 0.439 3.561 16 O -0.619 6.619 17 N -0.586 5.586 18 C -0.413 4.413 19 H 0.071 0.929 20 C -0.040 4.040 21 N -0.915 5.915 22 Si 1.133 2.867 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.276 1.276 26 C -0.090 4.090 27 H 0.092 0.908 28 C -0.137 4.137 29 C 0.100 3.900 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.045 0.955 40 H 0.038 0.962 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.345 0.655 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.385 0.615 47 H 0.259 0.741 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.061 0.939 51 H 0.107 0.893 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.187 5.432 -26.672 33.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.187 4.187 3 C -0.123 4.123 4 C -0.137 4.137 5 C -0.162 4.162 6 C 0.302 3.698 7 O -0.480 6.480 8 N -0.355 5.355 9 C -0.001 4.001 10 C -0.102 4.102 11 H 0.107 0.893 12 C -0.055 4.055 13 N -0.322 5.322 14 C -0.065 4.065 15 C 0.227 3.773 16 O -0.505 6.505 17 N -0.225 5.225 18 C -0.542 4.542 19 H 0.089 0.911 20 C -0.239 4.239 21 N -0.554 5.554 22 Si 0.953 3.047 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.201 1.201 26 C -0.109 4.109 27 H 0.111 0.889 28 C -0.194 4.194 29 C -0.021 4.021 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.164 0.836 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.219 0.781 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.097 0.903 50 H 0.080 0.920 51 H 0.126 0.874 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.823 3.863 -24.694 31.901 hybrid contribution -0.244 0.668 -0.844 1.103 sum -20.067 4.531 -25.537 32.793 Atomic orbital electron populations 1.24019 0.95934 1.02543 1.00994 1.23104 0.96465 0.99030 1.00067 1.20742 0.97866 0.95500 0.98182 1.21240 0.97642 0.96230 0.98593 1.21710 0.97477 1.00886 0.96089 1.21376 0.80928 0.80325 0.87175 1.90715 1.70040 1.37148 1.50070 1.48755 1.39164 1.17979 1.29644 1.21729 0.90803 0.98067 0.89550 1.22245 0.94720 0.95054 0.98219 0.89263 1.22029 0.95395 1.00788 0.87312 1.60039 1.10554 1.55742 1.05827 1.21512 0.91265 1.02524 0.91181 1.20958 0.82811 0.82325 0.91199 1.90505 1.38731 1.56642 1.64631 1.41986 1.07013 1.64292 1.09239 1.20530 0.96410 1.51453 0.85839 0.91069 1.27812 0.89818 0.94752 1.11498 1.70971 1.30429 1.46645 1.07392 0.82638 0.76745 0.77467 0.67856 1.19518 1.19685 1.20147 1.22384 0.96672 0.98324 0.93532 0.88937 1.21696 1.02650 0.92040 1.03050 1.22731 0.97991 0.85035 0.96367 0.87695 0.88188 0.87866 0.90107 0.89296 0.92992 0.93460 0.86307 0.85933 0.93656 0.94372 0.92442 0.90758 0.83625 0.90945 0.88068 0.78064 0.92968 0.92110 0.90330 0.91957 0.87438 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.29 14.32 67.78 0.97 -1.32 16 2 C -0.17 -2.17 9.52 25.65 0.24 -1.93 16 3 C -0.09 -0.88 5.66 29.85 0.17 -0.71 16 4 C -0.10 -1.57 4.49 30.60 0.14 -1.43 16 5 C -0.12 -1.55 4.71 29.85 0.14 -1.41 16 6 C 0.51 12.22 7.85 87.66 0.69 12.91 16 7 O -0.60 -21.40 16.31 -3.02 -0.05 -21.45 16 8 N -0.62 -12.73 3.33 -811.84 -2.70 -15.43 16 9 C 0.12 3.15 6.28 86.73 0.54 3.69 16 10 C -0.08 -1.49 2.60 -9.61 -0.03 -1.52 16 11 H 0.09 1.59 8.04 -2.38 -0.02 1.57 16 12 C 0.07 1.52 5.00 86.31 0.43 1.95 16 13 N -0.69 -21.33 5.93 -517.94 -3.07 -24.40 16 14 C 0.07 2.28 6.17 85.56 0.53 2.81 16 15 C 0.44 21.32 7.82 87.66 0.69 22.00 16 16 O -0.62 -35.58 15.78 -3.08 -0.05 -35.63 16 17 N -0.59 -30.36 5.28 -306.98 -1.62 -31.99 16 18 C -0.41 -24.18 9.68 84.04 0.81 -23.36 16 19 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 20 C -0.04 -2.23 5.50 84.92 0.47 -1.77 16 21 N -0.92 -51.59 13.68 21.66 0.30 -51.30 16 22 Si 1.13 49.48 29.92 68.60 2.05 51.53 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 26 C -0.09 -0.94 3.09 -9.41 -0.03 -0.97 16 27 H 0.09 0.94 8.05 -2.38 -0.02 0.92 16 28 C -0.14 -0.90 9.31 71.98 0.67 -0.23 16 29 C 0.10 1.00 6.16 86.85 0.53 1.54 16 30 H 0.10 0.99 7.84 -2.91 -0.02 0.96 16 31 H 0.10 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.10 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.08 0.63 7.79 -2.39 -0.02 0.61 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 36 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 37 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.12 0.83 7.85 -2.39 -0.02 0.82 16 39 H 0.04 1.42 7.77 -2.39 -0.02 1.40 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.55 8.06 -2.39 -0.02 1.53 16 43 H 0.35 11.17 8.43 -89.69 -0.76 10.41 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 46 H 0.39 18.17 6.73 -92.71 -0.62 17.54 16 47 H 0.26 14.11 6.78 -92.71 -0.63 13.48 16 48 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 50 H 0.06 0.41 8.08 -2.39 -0.02 0.39 16 51 H 0.11 0.47 7.48 -2.39 -0.02 0.45 16 52 H 0.09 0.66 7.99 -2.39 -0.02 0.64 16 Total: -1.00 -83.03 425.19 1.48 -81.55 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.34 Total: 36.86 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 6.97 Total: 10.26 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -7.10 Total: -123.12 kcal Atomic # 8 Polarization: -56.98 SS G_CDS: -0.10 Total: -57.08 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.05 Total: 51.53 kcal Total: -83.03 1.48 -81.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106606192.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.049 kcal (2) G-P(sol) polarization free energy of solvation -83.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds