Wall clock time and date at job start Tue Mar 31 2020 19:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99612 * 2 1 4 4 C 1.50696 * 120.00342 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47039 * 94.99680 * 4 2 1 6 6 H 1.09002 * 109.47067 * 55.00152 * 5 4 2 7 7 N 1.46499 * 109.47125 * 294.99854 * 5 4 2 8 8 C 1.34775 * 120.00012 * 300.00349 * 7 5 4 9 9 C 1.50703 * 119.99773 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00300 * 359.97438 * 8 7 5 11 11 C 1.50697 * 109.46783 * 174.99908 * 5 4 2 12 12 O 1.21284 * 120.00148 * 100.00228 * 11 5 4 13 13 N 1.34780 * 120.00473 * 280.00161 * 11 5 4 14 14 C 1.48119 * 127.03558 * 179.71124 * 13 11 5 15 15 C 1.54600 * 103.42006 * 219.28458 * 14 13 11 16 16 H 1.09000 * 110.57653 * 81.17142 * 15 14 13 17 17 C 1.52999 * 110.98615 * 204.37378 * 15 14 13 18 18 N 1.46495 * 109.47308 * 288.65265 * 17 15 14 19 19 C 1.36938 * 120.00185 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00144 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99853 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99987 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47175 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47429 * 119.99993 * 23 21 19 26 26 H 1.48497 * 109.47081 * 239.99976 * 23 21 19 27 27 C 1.54620 * 102.91095 * 322.86675 * 15 14 13 28 28 H 1.08997 * 110.32779 * 262.80519 * 27 15 14 29 29 C 1.53004 * 110.40947 * 140.63497 * 27 15 14 30 30 C 1.47482 * 127.02821 * 0.02562 * 13 11 5 31 31 H 1.08005 * 119.99890 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.00153 * 359.97438 * 1 2 3 33 33 H 1.09005 * 109.47082 * 270.00251 * 3 2 1 34 34 H 1.09003 * 109.47349 * 30.00168 * 3 2 1 35 35 H 1.09000 * 109.47399 * 150.00193 * 3 2 1 36 36 H 1.08996 * 109.46933 * 334.99339 * 4 2 1 37 37 H 1.08999 * 109.46957 * 214.99831 * 4 2 1 38 38 H 0.96998 * 119.99822 * 119.99877 * 7 5 4 39 39 H 1.09002 * 109.47152 * 179.97438 * 9 8 7 40 40 H 1.09001 * 109.46980 * 59.99839 * 9 8 7 41 41 H 1.09004 * 109.47113 * 299.99819 * 9 8 7 42 42 H 1.08996 * 110.65925 * 337.76795 * 14 13 11 43 43 H 1.08998 * 110.66031 * 100.88281 * 14 13 11 44 44 H 1.08999 * 109.47129 * 48.65362 * 17 15 14 45 45 H 1.08994 * 109.46994 * 168.64918 * 17 15 14 46 46 H 0.97001 * 120.00009 * 359.97438 * 18 17 15 47 47 H 0.97008 * 119.99464 * 179.97438 * 22 21 19 48 48 H 1.08993 * 109.47368 * 302.87725 * 29 27 15 49 49 H 1.09004 * 109.46602 * 62.87845 * 29 27 15 50 50 H 1.09005 * 109.46858 * 182.87181 * 29 27 15 51 51 H 1.08999 * 109.91931 * 273.87805 * 30 13 11 52 52 H 1.09005 * 109.91580 * 35.16444 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 1 2.9770 -0.8638 -1.9011 7 7 1.2031 -1.9423 -2.1994 8 6 0.3606 -2.9191 -1.8090 9 6 -0.8986 -3.1860 -2.5928 10 8 0.6162 -3.5840 -0.8274 11 6 3.2854 -2.9220 -1.4293 12 8 2.7912 -4.0036 -1.6681 13 7 4.6019 -2.8282 -1.1564 14 6 5.5827 -3.9368 -1.1005 15 6 6.4791 -3.5625 0.1022 16 1 6.0032 -3.8515 1.0393 17 6 7.8610 -4.2073 -0.0228 18 7 7.7489 -5.6502 0.2044 19 6 8.8646 -6.4418 0.1424 20 1 9.8271 -6.0025 -0.0745 21 6 8.7585 -7.8090 0.3582 22 7 7.5854 -8.3444 0.6220 23 14 10.2805 -8.8887 0.2742 24 1 11.4659 -8.0499 -0.0364 25 1 10.4806 -9.5647 1.5811 26 1 10.1049 -9.9098 -0.7895 27 6 6.5809 -2.0237 -0.0085 28 1 7.5036 -1.7407 -0.5152 29 6 6.5202 -1.3837 1.3799 30 6 5.3594 -1.6015 -0.8460 31 1 -0.5400 -0.9354 0.0004 32 1 -0.5400 0.9353 0.0004 33 1 2.2450 1.6199 -1.0277 34 1 1.4743 2.0648 0.5139 35 1 3.0159 1.1749 0.5138 36 1 1.4387 -2.0855 0.4335 37 1 2.9743 -1.1989 0.5889 38 1 0.9988 -1.4108 -2.9847 39 1 -1.4480 -4.0057 -2.1297 40 1 -0.6390 -3.4557 -3.6165 41 1 -1.5193 -2.2900 -2.5994 42 1 5.0792 -4.8871 -0.9229 43 1 6.1702 -3.9772 -2.0177 44 1 8.2572 -4.0266 -1.0219 45 1 8.5325 -3.7739 0.7183 46 1 6.8844 -6.0449 0.3989 47 1 7.5113 -9.2999 0.7725 48 1 5.5992 -1.6848 1.8789 49 1 7.3767 -1.7119 1.9689 50 1 6.5418 -0.2983 1.2809 51 1 5.6892 -1.1250 -1.7692 52 1 4.7359 -0.9150 -0.2731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106733180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:10 Heat of formation + Delta-G solvation = -43.636494 kcal Electronic energy + Delta-G solvation = -30758.860457 eV Core-core repulsion = 26759.036118 eV Total energy + Delta-G solvation = -3999.824338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.75216 -39.32042 -37.56399 -36.67449 -34.60431 -34.19690 -32.78401 -31.43669 -31.09894 -29.27627 -28.47301 -27.57309 -26.44412 -25.69541 -24.15428 -22.97364 -21.34800 -20.85020 -19.88099 -19.06644 -18.65984 -17.69157 -17.10293 -16.62403 -16.16650 -15.86336 -15.24862 -14.95227 -14.79585 -14.53737 -14.41491 -14.23466 -13.86696 -13.67529 -13.50764 -13.41517 -13.17211 -12.98824 -12.88678 -12.67203 -12.57705 -12.29860 -12.13321 -12.11390 -11.90878 -11.81778 -11.63921 -11.27790 -11.18309 -11.09731 -10.84153 -10.54601 -10.43427 -10.31462 -10.04920 -9.95150 -9.66481 -9.63857 -9.38470 -8.90851 -8.84349 -8.48395 -6.88355 -5.71334 -3.00948 1.91178 2.58714 2.79584 2.95607 3.30852 3.46525 3.51310 3.54278 4.31990 4.54466 4.58034 4.60333 4.66667 4.74122 4.82994 4.85481 4.93861 4.98453 5.12113 5.15891 5.23043 5.29615 5.32357 5.37743 5.46664 5.53463 5.57194 5.61748 5.62828 5.65660 5.69851 5.79841 5.83396 5.90907 6.00536 6.11041 6.15059 6.21353 6.23190 6.27631 6.38462 6.45233 6.54456 6.62256 6.74977 6.88216 7.39679 7.69851 7.73813 8.23250 8.39770 8.46546 9.57705 10.15513 10.49623 11.51234 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002796 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.332588 B =10011.731857 C =11327.459901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 C -0.120 4.120 4 C -0.101 4.101 5 C 0.149 3.851 6 H 0.104 0.896 7 N -0.722 5.722 8 C 0.514 3.486 9 C -0.172 4.172 10 O -0.510 6.510 11 C 0.517 3.483 12 O -0.506 6.506 13 N -0.623 5.623 14 C 0.117 3.883 15 C -0.102 4.102 16 H 0.083 0.917 17 C 0.166 3.834 18 N -0.733 5.733 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.100 4.100 28 H 0.087 0.913 29 C -0.142 4.142 30 C 0.102 3.898 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.402 0.598 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.020 0.980 45 H 0.023 0.977 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.053 0.947 51 H 0.065 0.935 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.615 25.122 -5.874 29.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.121 4.121 3 C -0.177 4.177 4 C -0.139 4.139 5 C 0.039 3.961 6 H 0.122 0.878 7 N -0.375 5.375 8 C 0.301 3.699 9 C -0.232 4.232 10 O -0.384 6.384 11 C 0.302 3.698 12 O -0.379 6.379 13 N -0.358 5.358 14 C -0.005 4.005 15 C -0.121 4.121 16 H 0.101 0.899 17 C 0.038 3.962 18 N -0.377 5.377 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.120 4.120 28 H 0.105 0.895 29 C -0.199 4.199 30 C -0.022 4.022 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.236 0.764 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.040 0.960 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.083 0.917 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.672 23.949 -5.335 28.588 hybrid contribution 0.567 -0.481 -0.421 0.854 sum -14.106 23.468 -5.756 27.979 Atomic orbital electron populations 1.23689 0.95290 1.01575 1.01862 1.21612 0.95404 0.94996 1.00087 1.20889 1.00310 0.94466 1.02006 1.21065 1.01922 0.96101 0.94833 1.20660 0.85941 0.95285 0.94199 0.87844 1.45632 1.22038 1.38054 1.31802 1.20625 0.84809 0.78930 0.85562 1.21897 0.95578 1.04071 1.01618 1.90748 1.74542 1.46087 1.26978 1.20406 0.80594 0.91108 0.77650 1.90786 1.71232 1.28845 1.47080 1.48863 1.07014 1.09974 1.69997 1.22461 0.89031 0.90857 0.98156 1.22511 0.97666 0.93198 0.98767 0.89876 1.20612 0.91883 0.86061 0.97667 1.42392 1.08705 1.00954 1.85696 1.19242 0.88181 0.89178 1.40588 0.91157 1.24763 0.96702 0.96853 1.02668 1.69682 1.22027 1.11240 1.54899 0.86130 0.82237 0.80709 0.77176 1.20589 1.21892 1.21894 1.22081 0.97562 0.95905 0.96407 0.89464 1.21838 1.02514 0.99662 0.95877 1.22271 0.93382 0.87549 0.98973 0.88720 0.88590 0.91535 0.91842 0.91676 0.88231 0.89990 0.76399 0.89075 0.89634 0.89817 0.89463 0.90943 0.96184 0.95963 0.78173 0.93522 0.92627 0.91830 0.92781 0.91674 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 13.68 29.01 0.40 -1.10 16 2 C -0.12 -0.97 5.08 -101.07 -0.51 -1.49 16 3 C -0.12 -0.70 10.03 36.01 0.36 -0.33 16 4 C -0.10 -1.07 4.58 -27.88 -0.13 -1.19 16 5 C 0.15 1.57 2.30 -69.08 -0.16 1.41 16 6 H 0.10 0.78 7.75 -51.93 -0.40 0.38 16 7 N -0.72 -6.88 4.74 -54.93 -0.26 -7.14 16 8 C 0.51 6.31 6.40 -10.98 -0.07 6.23 16 9 C -0.17 -1.37 10.32 36.01 0.37 -1.00 16 10 O -0.51 -8.98 12.94 -17.93 -0.23 -9.21 16 11 C 0.52 7.99 6.88 -10.99 -0.08 7.91 16 12 O -0.51 -10.37 13.89 -17.94 -0.25 -10.62 16 13 N -0.62 -8.88 3.29 -169.98 -0.56 -9.44 16 14 C 0.12 2.00 6.44 -2.31 -0.01 1.98 16 15 C -0.10 -1.64 2.60 -88.93 -0.23 -1.87 16 16 H 0.08 1.48 7.86 -51.93 -0.41 1.07 16 17 C 0.17 3.27 5.58 -4.05 -0.02 3.24 16 18 N -0.73 -18.85 5.52 -59.91 -0.33 -19.18 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16 23 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 C -0.10 -1.15 3.17 -89.24 -0.28 -1.43 16 28 H 0.09 0.94 7.85 -51.93 -0.41 0.53 16 29 C -0.14 -1.43 8.90 37.16 0.33 -1.10 16 30 C 0.10 1.04 6.16 -2.98 -0.02 1.02 16 31 H 0.09 0.89 7.69 -52.48 -0.40 0.49 16 32 H 0.10 0.62 8.04 -52.48 -0.42 0.19 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.34 8.06 -51.93 -0.42 -0.08 16 35 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.10 1.41 5.89 -51.93 -0.31 1.10 16 37 H 0.08 0.83 6.65 -51.93 -0.35 0.49 16 38 H 0.40 2.37 8.83 -40.82 -0.36 2.01 16 39 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 1.82 7.85 -51.93 -0.41 1.41 16 43 H 0.07 1.24 7.95 -51.93 -0.41 0.82 16 44 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 47 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 52 H 0.07 0.59 5.71 -51.93 -0.30 0.30 16 LS Contribution 415.20 15.07 6.26 6.26 Total: -1.00 -37.57 415.20 -9.06 -46.63 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -9.09 Total: 8.40 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.30 Total: 4.79 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.43 Total: -64.10 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.48 Total: -19.83 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -37.57 -9.06 -46.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106733180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.995 kcal (2) G-P(sol) polarization free energy of solvation -37.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds