Wall clock time and date at job start Tue Mar 31 2020 19:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99612 * 2 1 4 4 C 1.50696 * 120.00342 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47039 * 94.99680 * 4 2 1 6 6 H 1.09002 * 109.47067 * 55.00152 * 5 4 2 7 7 N 1.46499 * 109.47125 * 294.99854 * 5 4 2 8 8 C 1.34775 * 120.00012 * 300.00349 * 7 5 4 9 9 C 1.50703 * 119.99773 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00300 * 359.97438 * 8 7 5 11 11 C 1.50697 * 109.46783 * 174.99908 * 5 4 2 12 12 O 1.21284 * 120.00148 * 100.00228 * 11 5 4 13 13 N 1.34780 * 120.00473 * 280.00161 * 11 5 4 14 14 C 1.48119 * 127.03558 * 179.71124 * 13 11 5 15 15 C 1.54600 * 103.42006 * 219.28458 * 14 13 11 16 16 H 1.09000 * 110.57653 * 81.17142 * 15 14 13 17 17 C 1.52999 * 110.98615 * 204.37378 * 15 14 13 18 18 N 1.46495 * 109.47308 * 288.65265 * 17 15 14 19 19 C 1.36938 * 120.00185 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00144 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99853 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99987 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47175 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47429 * 119.99993 * 23 21 19 26 26 H 1.48497 * 109.47081 * 239.99976 * 23 21 19 27 27 C 1.54620 * 102.91095 * 322.86675 * 15 14 13 28 28 H 1.08997 * 110.32779 * 262.80519 * 27 15 14 29 29 C 1.53004 * 110.40947 * 140.63497 * 27 15 14 30 30 C 1.47482 * 127.02821 * 0.02562 * 13 11 5 31 31 H 1.08005 * 119.99890 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.00153 * 359.97438 * 1 2 3 33 33 H 1.09005 * 109.47082 * 270.00251 * 3 2 1 34 34 H 1.09003 * 109.47349 * 30.00168 * 3 2 1 35 35 H 1.09000 * 109.47399 * 150.00193 * 3 2 1 36 36 H 1.08996 * 109.46933 * 334.99339 * 4 2 1 37 37 H 1.08999 * 109.46957 * 214.99831 * 4 2 1 38 38 H 0.96998 * 119.99822 * 119.99877 * 7 5 4 39 39 H 1.09002 * 109.47152 * 179.97438 * 9 8 7 40 40 H 1.09001 * 109.46980 * 59.99839 * 9 8 7 41 41 H 1.09004 * 109.47113 * 299.99819 * 9 8 7 42 42 H 1.08996 * 110.65925 * 337.76795 * 14 13 11 43 43 H 1.08998 * 110.66031 * 100.88281 * 14 13 11 44 44 H 1.08999 * 109.47129 * 48.65362 * 17 15 14 45 45 H 1.08994 * 109.46994 * 168.64918 * 17 15 14 46 46 H 0.97001 * 120.00009 * 359.97438 * 18 17 15 47 47 H 0.97008 * 119.99464 * 179.97438 * 22 21 19 48 48 H 1.08993 * 109.47368 * 302.87725 * 29 27 15 49 49 H 1.09004 * 109.46602 * 62.87845 * 29 27 15 50 50 H 1.09005 * 109.46858 * 182.87181 * 29 27 15 51 51 H 1.08999 * 109.91931 * 273.87805 * 30 13 11 52 52 H 1.09005 * 109.91580 * 35.16444 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 1 2.9770 -0.8638 -1.9011 7 7 1.2031 -1.9423 -2.1994 8 6 0.3606 -2.9191 -1.8090 9 6 -0.8986 -3.1860 -2.5928 10 8 0.6162 -3.5840 -0.8274 11 6 3.2854 -2.9220 -1.4293 12 8 2.7912 -4.0036 -1.6681 13 7 4.6019 -2.8282 -1.1564 14 6 5.5827 -3.9368 -1.1005 15 6 6.4791 -3.5625 0.1022 16 1 6.0032 -3.8515 1.0393 17 6 7.8610 -4.2073 -0.0228 18 7 7.7489 -5.6502 0.2044 19 6 8.8646 -6.4418 0.1424 20 1 9.8271 -6.0025 -0.0745 21 6 8.7585 -7.8090 0.3582 22 7 7.5854 -8.3444 0.6220 23 14 10.2805 -8.8887 0.2742 24 1 11.4659 -8.0499 -0.0364 25 1 10.4806 -9.5647 1.5811 26 1 10.1049 -9.9098 -0.7895 27 6 6.5809 -2.0237 -0.0085 28 1 7.5036 -1.7407 -0.5152 29 6 6.5202 -1.3837 1.3799 30 6 5.3594 -1.6015 -0.8460 31 1 -0.5400 -0.9354 0.0004 32 1 -0.5400 0.9353 0.0004 33 1 2.2450 1.6199 -1.0277 34 1 1.4743 2.0648 0.5139 35 1 3.0159 1.1749 0.5138 36 1 1.4387 -2.0855 0.4335 37 1 2.9743 -1.1989 0.5889 38 1 0.9988 -1.4108 -2.9847 39 1 -1.4480 -4.0057 -2.1297 40 1 -0.6390 -3.4557 -3.6165 41 1 -1.5193 -2.2900 -2.5994 42 1 5.0792 -4.8871 -0.9229 43 1 6.1702 -3.9772 -2.0177 44 1 8.2572 -4.0266 -1.0219 45 1 8.5325 -3.7739 0.7183 46 1 6.8844 -6.0449 0.3989 47 1 7.5113 -9.2999 0.7725 48 1 5.5992 -1.6848 1.8789 49 1 7.3767 -1.7119 1.9689 50 1 6.5418 -0.2983 1.2809 51 1 5.6892 -1.1250 -1.7692 52 1 4.7359 -0.9150 -0.2731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106733180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:09 Heat of formation + Delta-G solvation = -70.303768 kcal Electronic energy + Delta-G solvation = -30760.016836 eV Core-core repulsion = 26759.036118 eV Total energy + Delta-G solvation = -4000.980718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.80078 -40.40997 -38.80287 -37.48369 -36.45217 -35.06161 -34.17792 -33.04585 -32.05168 -30.69000 -29.37432 -28.06781 -27.42357 -27.14711 -25.52081 -24.49752 -22.66067 -21.86593 -21.12648 -20.17732 -19.33729 -19.08336 -18.59440 -17.74923 -17.25207 -17.05350 -16.50128 -16.19085 -15.97966 -15.60252 -15.41686 -15.33302 -15.15227 -14.96670 -14.77774 -14.48720 -14.37276 -13.97899 -13.86816 -13.64670 -13.39291 -13.36424 -13.28901 -13.05853 -12.95120 -12.86219 -12.77230 -12.54858 -12.46433 -12.38829 -12.09710 -11.97924 -11.95209 -11.75070 -11.53419 -11.43722 -11.13876 -10.96839 -10.64485 -10.12094 -9.82480 -9.65944 -9.02628 -7.96348 -5.26553 1.25165 1.44703 1.46705 1.56811 1.58900 1.70816 2.03031 2.39307 2.54319 3.33016 3.37884 3.58050 3.69815 3.77793 3.81914 3.97653 4.07156 4.13656 4.16420 4.20545 4.24517 4.37429 4.47050 4.52886 4.54505 4.57602 4.66097 4.69555 4.79763 4.84560 4.86390 4.89063 4.96728 5.04215 5.05226 5.07109 5.08891 5.10068 5.22635 5.25959 5.27335 5.36504 5.44896 5.47829 5.56614 5.76027 6.03764 6.24631 6.57262 6.64278 7.15364 7.30002 7.47025 8.06563 8.28186 9.27703 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002796 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.332588 B =10011.731857 C =11327.459901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 C -0.117 4.117 4 C -0.096 4.096 5 C 0.157 3.843 6 H 0.150 0.850 7 N -0.707 5.707 8 C 0.503 3.497 9 C -0.165 4.165 10 O -0.573 6.573 11 C 0.505 3.495 12 O -0.569 6.569 13 N -0.621 5.621 14 C 0.120 3.880 15 C -0.093 4.093 16 H 0.057 0.943 17 C 0.165 3.835 18 N -0.750 5.750 19 C -0.241 4.241 20 H 0.082 0.918 21 C -0.083 4.083 22 N -0.975 5.975 23 Si 0.977 3.023 24 H -0.260 1.260 25 H -0.294 1.294 26 H -0.296 1.296 27 C -0.090 4.090 28 H 0.107 0.893 29 C -0.139 4.139 30 C 0.099 3.901 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.423 0.577 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.032 0.968 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.032 0.968 46 H 0.369 0.631 47 H 0.249 0.751 48 H 0.044 0.956 49 H 0.052 0.948 50 H 0.091 0.909 51 H 0.100 0.900 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 29.905 -7.199 33.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.118 4.118 3 C -0.173 4.173 4 C -0.134 4.134 5 C 0.048 3.952 6 H 0.167 0.833 7 N -0.362 5.362 8 C 0.292 3.708 9 C -0.224 4.224 10 O -0.451 6.451 11 C 0.293 3.707 12 O -0.447 6.447 13 N -0.355 5.355 14 C -0.003 4.003 15 C -0.113 4.113 16 H 0.076 0.924 17 C 0.039 3.961 18 N -0.392 5.392 19 C -0.373 4.373 20 H 0.100 0.900 21 C -0.274 4.274 22 N -0.626 5.626 23 Si 0.806 3.194 24 H -0.184 1.184 25 H -0.221 1.221 26 H -0.223 1.223 27 C -0.109 4.109 28 H 0.125 0.875 29 C -0.196 4.196 30 C -0.022 4.022 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.261 0.739 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.138 0.862 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.200 0.800 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.110 0.890 51 H 0.118 0.882 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.593 28.860 -6.701 32.598 hybrid contribution 0.239 -1.938 -0.001 1.953 sum -13.354 26.922 -6.703 30.791 Atomic orbital electron populations 1.23728 0.95478 1.01511 1.01940 1.21625 0.95304 0.94790 1.00054 1.20922 1.00259 0.92674 1.03487 1.20950 1.01638 0.96370 0.94469 1.20741 0.85750 0.93689 0.95040 0.83254 1.45539 1.21064 1.37448 1.32131 1.21428 0.85981 0.78434 0.84932 1.21900 0.93854 1.05295 1.01362 1.90732 1.76114 1.48422 1.29867 1.21473 0.80936 0.92039 0.76273 1.90760 1.72427 1.31583 1.49909 1.48953 1.06728 1.10535 1.69287 1.22175 0.89572 0.89989 0.98595 1.22326 0.95053 0.97032 0.96906 0.92406 1.20805 0.94242 0.83019 0.98033 1.42690 1.07406 1.03464 1.85677 1.19723 0.89231 0.89729 1.38605 0.89982 1.25679 0.99728 0.98546 1.03492 1.69875 1.24523 1.11065 1.57102 0.85013 0.79184 0.78617 0.76592 1.18370 1.22118 1.22315 1.22105 0.99283 0.91499 0.98046 0.87480 1.21836 1.01528 1.01829 0.94417 1.22613 0.92687 0.86039 1.00844 0.90987 0.86459 0.89552 0.91158 0.90947 0.92614 0.89524 0.73909 0.90464 0.87983 0.86250 0.94897 0.90906 0.95176 0.94981 0.80025 0.94184 0.93683 0.92929 0.89035 0.88162 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 13.68 67.78 0.93 -1.77 16 2 C -0.12 -1.59 5.08 -16.49 -0.08 -1.67 16 3 C -0.12 -0.81 10.03 71.24 0.71 -0.10 16 4 C -0.10 -1.93 4.58 29.85 0.14 -1.79 16 5 C 0.16 3.06 2.30 44.25 0.10 3.17 16 6 H 0.15 1.54 7.75 -2.39 -0.02 1.52 16 7 N -0.71 -12.64 4.74 -446.10 -2.11 -14.75 16 8 C 0.50 12.72 6.40 87.66 0.56 13.28 16 9 C -0.16 -2.54 10.32 71.24 0.74 -1.81 16 10 O -0.57 -21.90 12.94 19.44 0.25 -21.65 16 11 C 0.50 15.90 6.88 87.66 0.60 16.50 16 12 O -0.57 -25.06 13.89 19.42 0.27 -24.79 16 13 N -0.62 -17.51 3.29 -810.07 -2.67 -20.18 16 14 C 0.12 4.32 6.44 86.61 0.56 4.88 16 15 C -0.09 -3.05 2.60 -9.70 -0.03 -3.08 16 16 H 0.06 2.18 7.86 -2.39 -0.02 2.16 16 17 C 0.17 6.53 5.58 86.38 0.48 7.01 16 18 N -0.75 -39.94 5.52 -343.47 -1.90 -41.84 16 19 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 22 N -0.97 -63.53 13.06 21.65 0.28 -63.24 16 23 Si 0.98 47.83 29.55 68.60 2.03 49.86 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 27 C -0.09 -1.82 3.17 -9.90 -0.03 -1.85 16 28 H 0.11 1.83 7.85 -2.39 -0.02 1.81 16 29 C -0.14 -2.38 8.90 71.98 0.64 -1.74 16 30 C 0.10 1.67 6.16 86.53 0.53 2.20 16 31 H 0.07 1.36 7.69 -2.91 -0.02 1.34 16 32 H 0.12 1.16 8.04 -2.91 -0.02 1.14 16 33 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 34 H 0.07 0.43 8.06 -2.39 -0.02 0.42 16 35 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 36 H 0.06 1.67 5.89 -2.39 -0.01 1.66 16 37 H 0.09 1.61 6.65 -2.39 -0.02 1.59 16 38 H 0.42 3.80 8.83 -92.71 -0.82 2.98 16 39 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.03 1.52 7.85 -2.39 -0.02 1.50 16 43 H 0.07 2.57 7.95 -2.39 -0.02 2.55 16 44 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 45 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.37 21.70 7.67 -92.71 -0.71 20.99 16 47 H 0.25 15.75 8.31 -92.70 -0.77 14.98 16 48 H 0.04 0.87 8.13 -2.39 -0.02 0.85 16 49 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 50 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 51 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 52 H 0.10 1.16 5.71 -2.38 -0.01 1.15 16 Total: -1.00 -91.42 415.20 2.70 -88.73 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: -0.62 Total: 32.18 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 7.16 Total: 15.68 kcal Atomic # 7 Polarization: -133.62 SS G_CDS: -6.39 Total: -140.01 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: 0.52 Total: -46.43 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -91.42 2.70 -88.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106733180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.422 kcal (2) G-P(sol) polarization free energy of solvation -91.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds