Wall clock time and date at job start Tue Mar 31 2020 19:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 119.99839 * 2 1 4 4 N 1.34772 * 120.00151 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00203 * 175.67980 * 4 2 1 6 6 C 1.50704 * 110.01878 * 296.04691 * 5 4 2 7 7 O 1.21275 * 119.99752 * 134.36187 * 6 5 4 8 8 N 1.34770 * 119.99982 * 314.36715 * 6 5 4 9 9 C 1.48150 * 127.83870 * 174.98963 * 8 6 5 10 10 C 1.54388 * 104.61547 * 219.58869 * 9 8 6 11 11 H 1.09001 * 110.34721 * 95.00998 * 10 9 8 12 12 C 1.53005 * 110.42623 * 217.21579 * 10 9 8 13 13 N 1.46498 * 109.47092 * 292.06338 * 12 10 9 14 14 C 1.36940 * 120.00092 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99838 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00300 * 180.02562 * 14 13 12 17 17 N 1.31613 * 119.99800 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00025 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47283 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47450 * 119.99861 * 18 16 14 21 21 H 1.48508 * 109.46840 * 239.99899 * 18 16 14 22 22 C 1.54286 * 104.96517 * 336.13029 * 10 9 8 23 23 H 1.09002 * 110.34438 * 241.13430 * 22 10 9 24 24 C 1.52994 * 110.34171 * 118.97666 * 22 10 9 25 25 C 1.48147 * 127.83837 * 354.99303 * 8 6 5 26 26 C 1.54268 * 110.03411 * 57.44315 * 5 4 2 27 27 C 1.54960 * 104.16179 * 95.75053 * 26 5 4 28 28 C 1.54889 * 102.77555 * 37.89240 * 27 26 5 29 29 C 1.53882 * 110.03126 * 174.65695 * 5 4 2 30 30 H 1.08994 * 109.47316 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47052 * 300.00450 * 1 2 3 32 32 H 1.09004 * 109.47255 * 60.00182 * 1 2 3 33 33 H 0.97005 * 119.99571 * 355.67632 * 4 2 1 34 34 H 1.08993 * 110.40620 * 100.80405 * 9 8 6 35 35 H 1.09000 * 110.40721 * 338.36944 * 9 8 6 36 36 H 1.08995 * 109.47433 * 52.06723 * 12 10 9 37 37 H 1.09006 * 109.47133 * 172.06579 * 12 10 9 38 38 H 0.96992 * 120.00230 * 0.02562 * 13 12 10 39 39 H 0.97006 * 120.00346 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.47152 * 60.00671 * 24 22 10 41 41 H 1.09005 * 109.47221 * 180.02562 * 24 22 10 42 42 H 1.09000 * 109.47101 * 300.00247 * 24 22 10 43 43 H 1.08998 * 110.40804 * 21.62527 * 25 8 6 44 44 H 1.09004 * 110.50583 * 259.24884 * 25 8 6 45 45 H 1.08993 * 110.48530 * 214.40302 * 26 5 4 46 46 H 1.09007 * 110.48023 * 337.04185 * 26 5 4 47 47 H 1.08997 * 110.72508 * 279.57641 * 27 26 5 48 48 H 1.09007 * 110.76366 * 156.22163 * 27 26 5 49 49 H 1.09005 * 110.48362 * 203.40382 * 28 27 26 50 50 H 1.09003 * 110.49024 * 80.75967 * 28 27 26 51 51 H 1.08996 * 110.02958 * 359.95357 * 29 5 4 52 52 H 1.08997 * 110.02902 * 121.33500 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6427 -1.1690 -0.0950 6 6 4.0738 -0.5968 -1.4209 7 8 4.9713 0.2175 -1.4669 8 7 3.4618 -0.9900 -2.5555 9 6 3.6717 -0.4723 -3.9276 10 6 2.2578 -0.4233 -4.5459 11 1 1.8289 0.5723 -4.4324 12 6 2.3077 -0.8144 -6.0243 13 7 3.0187 0.2202 -6.7794 14 6 3.1880 0.0864 -8.1317 15 1 2.7971 -0.7817 -8.6416 16 6 3.8621 1.0665 -8.8472 17 7 4.3381 2.1246 -8.2259 18 14 4.0925 0.8842 -10.6919 19 1 3.4686 -0.3847 -11.1457 20 1 3.4496 2.0285 -11.3866 21 1 5.5429 0.8636 -11.0100 22 6 1.4369 -1.4556 -3.7455 23 1 1.0707 -2.2423 -4.4051 24 6 0.2673 -0.7703 -3.0361 25 6 2.4266 -2.0380 -2.7135 26 6 4.2488 -0.3437 1.0588 27 6 4.5902 -1.3989 2.1411 28 6 5.0936 -2.5996 1.3021 29 6 4.1793 -2.6029 0.0597 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6979 -2.0060 0.0642 34 1 4.3114 -1.1481 -4.4951 35 1 4.1069 0.5265 -3.8946 36 1 2.8294 -1.7654 -6.1312 37 1 1.2924 -0.9118 -6.4088 38 1 3.3694 1.0000 -6.3216 39 1 4.8089 2.8098 -8.7259 40 1 -0.3796 -0.2980 -3.7754 41 1 -0.3022 -1.5115 -2.4753 42 1 0.6506 -0.0133 -2.3520 43 1 1.9226 -2.2204 -1.7644 44 1 2.8705 -2.9594 -3.0904 45 1 5.1519 0.1689 0.7278 46 1 3.5203 0.3723 1.4393 47 1 3.7004 -1.6706 2.7091 48 1 5.3756 -1.0337 2.8028 49 1 4.9816 -3.5290 1.8606 50 1 6.1334 -2.4518 1.0102 51 1 3.3520 -3.2972 0.2067 52 1 4.7506 -2.8852 -0.8246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106755817.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:24 Heat of formation + Delta-G solvation = -56.275440 kcal Electronic energy + Delta-G solvation = -31831.294548 eV Core-core repulsion = 27830.922144 eV Total energy + Delta-G solvation = -4000.372404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.27842 -39.23228 -38.34579 -36.98340 -34.70889 -33.96241 -32.71709 -31.41381 -30.43752 -29.39637 -28.84402 -27.80997 -26.42381 -25.39965 -23.40772 -21.89037 -21.68993 -20.99448 -20.29730 -19.74286 -19.19270 -17.53313 -17.12944 -16.87640 -16.11360 -15.95200 -15.78285 -15.25574 -15.07151 -14.51894 -14.38246 -14.02297 -13.95384 -13.48862 -13.48310 -13.33647 -13.12060 -13.03306 -12.83699 -12.56393 -12.44630 -12.19287 -12.03404 -11.90623 -11.65946 -11.51994 -11.47960 -11.22681 -11.18409 -11.13064 -10.86875 -10.85207 -10.57958 -10.51611 -10.27671 -10.14836 -9.93476 -9.90322 -9.64968 -9.02474 -8.86193 -8.53124 -6.90463 -5.73228 -3.02926 2.37671 2.55250 2.97706 3.11987 3.45176 3.49980 3.52942 4.16914 4.19591 4.41487 4.54967 4.57695 4.60772 4.72131 4.87033 4.88367 4.92265 5.08644 5.11261 5.14567 5.19875 5.33358 5.36319 5.38907 5.42619 5.46080 5.52152 5.58528 5.59983 5.62548 5.68453 5.74679 5.78192 5.79064 5.95811 5.99946 6.07149 6.11805 6.18875 6.20557 6.26228 6.30193 6.42465 6.56047 6.72112 6.85898 7.17367 7.71248 7.71928 7.99862 8.28793 8.44657 9.55850 10.13455 10.47618 11.49369 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.003013 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.250882 B = 9289.674217 C = 9879.978051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.509 3.491 3 O -0.523 6.523 4 N -0.719 5.719 5 C 0.162 3.838 6 C 0.537 3.463 7 O -0.526 6.526 8 N -0.616 5.616 9 C 0.116 3.884 10 C -0.102 4.102 11 H 0.080 0.920 12 C 0.165 3.835 13 N -0.733 5.733 14 C -0.241 4.241 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.930 5.930 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.101 4.101 23 H 0.088 0.912 24 C -0.148 4.148 25 C 0.100 3.900 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.120 4.120 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.400 0.600 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.020 0.980 37 H 0.022 0.978 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.080 0.920 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 -14.421 23.588 28.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.296 3.704 3 O -0.398 6.398 4 N -0.376 5.376 5 C 0.073 3.927 6 C 0.323 3.677 7 O -0.401 6.401 8 N -0.349 5.349 9 C -0.006 4.006 10 C -0.122 4.122 11 H 0.099 0.901 12 C 0.037 3.963 13 N -0.377 5.377 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.120 4.120 23 H 0.106 0.894 24 C -0.205 4.205 25 C -0.023 4.023 26 C -0.159 4.159 27 C -0.161 4.161 28 C -0.160 4.160 29 C -0.158 4.158 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.237 0.763 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.105 0.895 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.091 0.909 51 H 0.098 0.902 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.632 -13.226 23.471 28.001 hybrid contribution -0.086 -0.257 -1.102 1.135 sum -7.717 -13.482 22.369 27.234 Atomic orbital electron populations 1.22050 0.91561 1.04216 1.05651 1.20830 0.90605 0.83550 0.75416 1.90809 1.70285 1.31170 1.47575 1.46430 1.05958 1.09123 1.76136 1.21168 0.80727 0.97270 0.93552 1.20166 0.81928 0.81475 0.84104 1.90708 1.30086 1.33248 1.86043 1.48937 1.40418 1.38172 1.07423 1.22421 0.97175 1.00971 0.80027 1.22373 0.94350 0.99426 0.96013 0.90123 1.20704 0.95493 0.92580 0.87547 1.42390 1.66870 1.23052 1.05436 1.19240 1.29743 1.04204 0.84047 0.91169 1.24758 1.01124 0.97035 0.98026 1.69676 1.42697 1.10795 1.34691 0.86131 0.77415 0.77143 0.85556 1.20589 1.21884 1.21872 1.22093 0.95097 0.98403 0.96437 0.89381 1.22053 0.97461 1.00258 1.00707 1.22633 0.89198 0.90911 0.99607 1.22708 1.02767 0.97527 0.92850 1.22541 1.00837 0.95298 0.97428 1.22356 0.99577 0.98794 0.95234 1.22421 1.00195 0.93018 1.00193 0.90558 0.88851 0.88086 0.76261 0.90592 0.89987 0.96221 0.96067 0.78194 0.93508 0.91949 0.92814 0.92475 0.90387 0.91236 0.88774 0.89545 0.91592 0.91028 0.91022 0.90917 0.90189 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.35 36.01 0.34 -0.82 16 2 C 0.51 5.45 6.04 -10.99 -0.07 5.38 16 3 O -0.52 -8.50 14.61 5.55 0.08 -8.42 16 4 N -0.72 -6.01 3.16 -47.64 -0.15 -6.16 16 5 C 0.16 1.79 0.49 -131.85 -0.06 1.72 16 6 C 0.54 8.51 5.61 -10.99 -0.06 8.45 16 7 O -0.53 -10.86 15.72 5.56 0.09 -10.77 16 8 N -0.62 -8.95 3.31 -169.30 -0.56 -9.51 16 9 C 0.12 2.03 6.32 -2.41 -0.02 2.01 16 10 C -0.10 -1.65 2.76 -89.22 -0.25 -1.90 16 11 H 0.08 1.45 7.71 -51.93 -0.40 1.05 16 12 C 0.16 3.22 5.37 -4.04 -0.02 3.20 16 13 N -0.73 -18.72 5.46 -59.91 -0.33 -19.05 16 14 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.87 13.06 55.49 0.72 -28.14 16 18 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 C -0.10 -1.15 3.30 -89.22 -0.29 -1.44 16 23 H 0.09 0.92 7.71 -51.93 -0.40 0.52 16 24 C -0.15 -1.43 7.99 37.15 0.30 -1.13 16 25 C 0.10 1.03 6.10 -2.40 -0.01 1.02 16 26 C -0.12 -1.44 5.44 -25.03 -0.14 -1.57 16 27 C -0.12 -1.00 6.91 -24.70 -0.17 -1.17 16 28 C -0.12 -0.89 6.83 -25.07 -0.17 -1.06 16 29 C -0.12 -0.94 6.01 -25.61 -0.15 -1.10 16 30 H 0.08 0.26 7.92 -51.93 -0.41 -0.15 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.74 6.44 -51.93 -0.33 0.41 16 33 H 0.40 1.86 6.96 -40.82 -0.28 1.58 16 34 H 0.08 1.38 7.78 -51.93 -0.40 0.98 16 35 H 0.08 1.71 7.93 -51.93 -0.41 1.30 16 36 H 0.02 0.39 8.02 -51.93 -0.42 -0.03 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.38 10.53 7.56 -40.82 -0.31 10.23 16 39 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.63 4.82 -51.93 -0.25 0.38 16 43 H 0.08 0.58 4.69 -51.93 -0.24 0.34 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 1.39 6.76 -51.93 -0.35 1.04 16 46 H 0.09 1.16 5.97 -51.92 -0.31 0.85 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.08 0.40 7.45 -51.93 -0.39 0.01 16 52 H 0.08 0.71 7.67 -51.93 -0.40 0.32 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -37.21 395.02 -8.91 -46.12 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.66 Total: 8.15 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.03 Total: 4.14 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.31 Total: -62.86 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.17 Total: -19.19 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.21 -8.91 -46.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106755817.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.160 kcal (2) G-P(sol) polarization free energy of solvation -37.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds