Wall clock time and date at job start Tue Mar 31 2020 19:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 119.99824 * 2 1 4 4 N 1.34781 * 120.00212 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99951 * 184.24309 * 4 2 1 6 6 C 1.52995 * 109.47264 * 185.77765 * 5 4 2 7 7 C 1.50703 * 109.47001 * 305.78142 * 5 4 2 8 8 O 1.21281 * 119.99776 * 145.00240 * 7 5 4 9 9 N 1.34778 * 120.00157 * 325.00008 * 7 5 4 10 10 C 1.47477 * 127.03439 * 180.02562 * 9 7 5 11 11 C 1.54006 * 107.08371 * 154.51822 * 10 9 7 12 12 H 1.08995 * 110.32856 * 120.30243 * 11 10 9 13 13 C 1.52999 * 110.32465 * 242.41388 * 11 10 9 14 14 N 1.46498 * 109.47186 * 293.54558 * 13 11 10 15 15 C 1.36939 * 119.99897 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00523 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99686 * 180.02562 * 15 14 13 18 18 N 1.31618 * 119.99831 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00181 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47021 * 90.00086 * 19 17 15 21 21 H 1.48496 * 109.47176 * 210.00349 * 19 17 15 22 22 H 1.48501 * 109.47086 * 330.00231 * 19 17 15 23 23 C 1.54626 * 105.04383 * 1.30311 * 11 10 9 24 24 H 1.09000 * 110.73771 * 263.33082 * 23 11 10 25 25 C 1.52992 * 110.73578 * 140.18777 * 23 11 10 26 26 C 1.48115 * 127.02876 * 359.68554 * 9 7 5 27 27 C 1.53008 * 109.47174 * 65.78025 * 5 4 2 28 28 C 1.53002 * 117.49811 * 66.73448 * 27 5 4 29 29 C 1.52999 * 117.49603 * 358.11351 * 27 5 4 30 30 H 1.08997 * 109.47051 * 239.99588 * 1 2 3 31 31 H 1.08997 * 109.47473 * 359.97438 * 1 2 3 32 32 H 1.09010 * 109.46809 * 119.99915 * 1 2 3 33 33 H 0.96992 * 119.99793 * 4.23310 * 4 2 1 34 34 H 1.08996 * 109.47085 * 300.00484 * 6 5 4 35 35 H 1.09004 * 109.46525 * 60.00234 * 6 5 4 36 36 H 1.08994 * 109.47552 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.91507 * 273.87420 * 10 9 7 38 38 H 1.09003 * 109.91431 * 35.15511 * 10 9 7 39 39 H 1.09004 * 109.47341 * 53.54434 * 13 11 10 40 40 H 1.09004 * 109.47333 * 173.54266 * 13 11 10 41 41 H 0.96997 * 120.00330 * 359.97438 * 14 13 11 42 42 H 0.97000 * 120.00414 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.47540 * 60.00425 * 25 23 11 44 44 H 1.08999 * 109.47081 * 180.02562 * 25 23 11 45 45 H 1.08995 * 109.47539 * 299.99999 * 25 23 11 46 46 H 1.09001 * 110.66730 * 337.76630 * 26 9 7 47 47 H 1.08999 * 110.66104 * 100.88807 * 26 9 7 48 48 H 1.08997 * 115.55971 * 212.42933 * 27 5 4 49 49 H 1.08991 * 117.49530 * 145.02104 * 28 27 5 50 50 H 1.08998 * 117.49393 * 0.02562 * 28 27 5 51 51 H 1.09000 * 117.50051 * 359.97438 * 29 27 5 52 52 H 1.09008 * 117.49603 * 214.97862 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6429 -1.1689 0.0933 6 6 4.1630 -2.5982 -0.0725 7 6 4.2170 -0.2962 -0.9929 8 8 5.2197 0.3529 -0.7826 9 7 3.6163 -0.2370 -2.1979 10 6 4.0415 0.5590 -3.3643 11 6 3.4962 -0.1492 -4.6184 12 1 2.8323 0.5161 -5.1704 13 6 4.6493 -0.6094 -5.5125 14 7 5.3476 0.5609 -6.0500 15 6 6.4218 0.3945 -6.8828 16 1 6.7545 -0.5995 -7.1432 17 6 7.0839 1.5035 -7.3916 18 7 8.1167 1.3435 -8.1917 19 14 6.5091 3.2226 -6.9408 20 1 7.2139 3.6744 -5.7143 21 1 6.8113 4.1542 -8.0570 22 1 5.0450 3.2058 -6.6927 23 6 2.7127 -1.3694 -4.0816 24 1 3.3310 -2.2667 -4.1072 25 6 1.4239 -1.5790 -4.8788 26 6 2.3979 -0.9636 -2.6237 27 6 4.0669 -0.6274 1.4602 28 6 3.7164 -1.4651 2.6916 29 6 2.9609 -0.1646 2.4106 30 1 -0.3633 -0.5139 0.8899 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8901 33 1 1.6980 -2.0060 -0.0629 34 1 3.7477 -3.2294 0.7131 35 1 3.8609 -2.9839 -1.0463 36 1 5.2507 -2.5995 -0.0031 37 1 3.6287 1.5655 -3.2973 38 1 5.1298 0.6034 -3.4067 39 1 5.3451 -1.2108 -4.9274 40 1 4.2554 -1.2069 -6.3348 41 1 5.0487 1.4536 -5.8165 42 1 8.5791 2.1184 -8.5476 43 1 1.6688 -1.7516 -5.9269 44 1 0.8886 -2.4424 -4.4836 45 1 0.7957 -0.6924 -4.7937 46 1 2.2408 -1.8471 -2.0050 47 1 1.5274 -0.3085 -2.5887 48 1 5.0076 -0.0772 1.4768 49 1 4.4266 -1.4659 3.5183 50 1 3.1841 -2.4021 2.5279 51 1 1.9313 -0.2455 2.0621 52 1 3.1741 0.6901 3.0527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106868868.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:17 Heat of formation + Delta-G solvation = -41.852919 kcal Electronic energy + Delta-G solvation = -31887.951602 eV Core-core repulsion = 27888.204605 eV Total energy + Delta-G solvation = -3999.746997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.37534 -40.40362 -39.29695 -38.06335 -36.68294 -35.46634 -34.03479 -33.34078 -32.44369 -30.95904 -29.80504 -27.67155 -27.24969 -25.87007 -24.71329 -23.24984 -22.75574 -22.14217 -21.68682 -21.00910 -20.19735 -19.69447 -18.32982 -17.89821 -17.79559 -17.10365 -16.67280 -16.42321 -16.05065 -15.88010 -15.68363 -15.33772 -15.13977 -14.84033 -14.70271 -14.35061 -14.17567 -14.03705 -13.81295 -13.69232 -13.59339 -13.34010 -13.18320 -13.13131 -12.99706 -12.87060 -12.85076 -12.61641 -12.47171 -12.27996 -12.16340 -11.93189 -11.90917 -11.61388 -11.50962 -11.38275 -11.34541 -11.07138 -11.02698 -10.74601 -10.02057 -9.74626 -9.36357 -8.09401 -5.42231 1.29263 1.34716 1.39441 1.49175 1.64971 1.90241 2.19350 2.41124 2.84621 3.22168 3.29746 3.41580 3.54228 3.62064 3.69594 3.79474 3.95091 3.95290 4.04053 4.13777 4.22448 4.34916 4.38740 4.44419 4.50124 4.54372 4.60579 4.65419 4.67214 4.69441 4.75096 4.78336 4.82472 4.86416 4.94873 4.97868 5.05546 5.10100 5.14076 5.16675 5.17876 5.22971 5.24284 5.36198 5.41231 5.54523 5.69174 6.15010 6.50402 6.61104 7.00937 7.10445 7.33341 7.77468 7.94922 9.12199 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.003373 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.279306 B = 8298.311118 C = 8833.492883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.502 3.498 3 O -0.579 6.579 4 N -0.710 5.710 5 C 0.209 3.791 6 C -0.147 4.147 7 C 0.531 3.469 8 O -0.598 6.598 9 N -0.609 5.609 10 C 0.110 3.890 11 C -0.096 4.096 12 H 0.092 0.908 13 C 0.168 3.832 14 N -0.760 5.760 15 C -0.234 4.234 16 H 0.060 0.940 17 C -0.060 4.060 18 N -0.981 5.981 19 Si 0.947 3.053 20 H -0.289 1.289 21 H -0.287 1.287 22 H -0.251 1.251 23 C -0.091 4.091 24 H 0.088 0.912 25 C -0.134 4.134 26 C 0.107 3.893 27 C -0.175 4.175 28 C -0.136 4.136 29 C -0.169 4.169 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.428 0.572 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.013 0.987 40 H 0.040 0.960 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.120 0.880 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.100 0.900 50 H 0.129 0.871 51 H 0.104 0.896 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.103 -14.593 22.763 37.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.292 3.708 3 O -0.457 6.457 4 N -0.369 5.369 5 C 0.119 3.881 6 C -0.205 4.205 7 C 0.321 3.679 8 O -0.478 6.478 9 N -0.340 5.340 10 C -0.014 4.014 11 C -0.115 4.115 12 H 0.111 0.889 13 C 0.042 3.958 14 N -0.406 5.406 15 C -0.365 4.365 16 H 0.078 0.922 17 C -0.252 4.252 18 N -0.631 5.631 19 Si 0.775 3.225 20 H -0.216 1.216 21 H -0.213 1.213 22 H -0.175 1.175 23 C -0.111 4.111 24 H 0.107 0.893 25 C -0.191 4.191 26 C -0.014 4.014 27 C -0.195 4.195 28 C -0.173 4.173 29 C -0.206 4.206 30 H 0.137 0.863 31 H 0.098 0.902 32 H 0.139 0.861 33 H 0.268 0.732 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.031 0.969 40 H 0.058 0.942 41 H 0.196 0.804 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.138 0.862 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.118 0.882 50 H 0.147 0.853 51 H 0.122 0.878 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.989 -13.640 22.855 36.508 hybrid contribution 0.998 1.776 -0.360 2.069 sum -23.991 -11.864 22.495 34.962 Atomic orbital electron populations 1.22012 0.87431 1.05983 1.07238 1.21646 0.92393 0.82933 0.73859 1.90849 1.71795 1.33372 1.49681 1.46275 1.04613 1.10276 1.75768 1.19627 0.81711 0.96517 0.90258 1.22093 1.02503 0.90528 1.05354 1.21081 0.82752 0.81633 0.82456 1.90669 1.28785 1.47089 1.81284 1.48696 1.28714 1.45798 1.10828 1.21939 0.99149 0.94546 0.85764 1.22338 0.96807 0.98751 0.93604 0.88940 1.20819 0.91623 0.88811 0.94561 1.42790 1.35685 1.04431 1.57669 1.19052 1.04558 0.93682 1.19203 0.92199 1.25434 0.98139 1.01556 1.00024 1.69859 1.24255 1.30425 1.38585 0.85525 0.79250 0.80708 0.77061 1.21631 1.21318 1.17549 1.22289 0.98026 0.96471 0.94331 0.89337 1.21715 0.94619 1.03214 0.99584 1.23037 0.86230 0.97295 0.94886 1.22287 1.00427 1.06550 0.90270 1.23136 1.02290 0.95454 0.96410 1.22979 0.97100 0.98722 1.01824 0.86316 0.90176 0.86147 0.73152 0.86419 0.89722 0.91805 0.93447 0.94069 0.96908 0.94215 0.80440 0.93233 0.92713 0.89210 0.91881 0.86231 0.90272 0.90392 0.88165 0.85323 0.87788 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.32 71.24 0.74 -0.17 16 2 C 0.50 7.92 3.06 87.66 0.27 8.18 16 3 O -0.58 -17.27 14.45 -3.02 -0.04 -17.32 16 4 N -0.71 -7.56 2.26 -426.32 -0.96 -8.52 16 5 C 0.21 4.10 0.52 2.86 0.00 4.10 16 6 C -0.15 -1.81 8.26 71.98 0.59 -1.22 16 7 C 0.53 17.43 5.04 87.66 0.44 17.87 16 8 O -0.60 -27.14 16.06 -3.03 -0.05 -27.18 16 9 N -0.61 -17.72 3.05 -810.16 -2.47 -20.19 16 10 C 0.11 3.92 6.31 86.53 0.55 4.47 16 11 C -0.10 -2.82 2.65 -9.90 -0.03 -2.85 16 12 H 0.09 2.62 7.85 -2.39 -0.02 2.60 16 13 C 0.17 6.56 5.34 86.38 0.46 7.02 16 14 N -0.76 -37.91 5.13 -343.44 -1.76 -39.67 16 15 C -0.23 -14.09 10.47 84.04 0.88 -13.21 16 16 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 17 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 18 N -0.98 -65.40 13.97 21.65 0.30 -65.10 16 19 Si 0.95 48.87 27.74 68.60 1.90 50.78 16 20 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 21 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 22 H -0.25 -11.71 6.52 99.48 0.65 -11.06 16 23 C -0.09 -1.70 3.19 -9.71 -0.03 -1.73 16 24 H 0.09 1.65 7.86 -2.39 -0.02 1.63 16 25 C -0.13 -1.68 9.16 71.98 0.66 -1.02 16 26 C 0.11 1.78 4.54 86.60 0.39 2.17 16 27 C -0.18 -3.97 4.75 -10.79 -0.05 -4.02 16 28 C -0.14 -1.75 9.68 30.60 0.30 -1.45 16 29 C -0.17 -3.15 8.61 30.59 0.26 -2.89 16 30 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.12 -0.05 8.14 -2.38 -0.02 -0.07 16 33 H 0.43 0.22 8.00 -92.71 -0.74 -0.52 16 34 H 0.12 0.49 6.90 -2.39 -0.02 0.48 16 35 H 0.08 0.81 7.43 -2.38 -0.02 0.79 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.04 1.84 7.48 -2.39 -0.02 1.82 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.36 17.68 5.37 -92.71 -0.50 17.18 16 42 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 43 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 46 H 0.12 1.02 5.15 -2.39 -0.01 1.00 16 47 H 0.08 1.17 7.34 -2.39 -0.02 1.15 16 48 H 0.08 2.50 7.17 -2.39 -0.02 2.48 16 49 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.13 0.75 7.18 -2.39 -0.02 0.74 16 51 H 0.10 1.62 5.22 -2.39 -0.01 1.60 16 52 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -96.28 397.78 2.44 -93.84 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.37 Total: 21.36 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 5.90 Total: 12.01 kcal Atomic # 7 Polarization: -128.59 SS G_CDS: -4.90 Total: -133.49 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.09 Total: -44.50 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 1.90 Total: 50.78 kcal Total: -96.28 2.44 -93.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106868868.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.987 kcal (2) G-P(sol) polarization free energy of solvation -96.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds