Wall clock time and date at job start Tue Mar 31 2020 19:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.28544 * 2 1 4 4 C 1.54003 * 110.32537 * 237.86803 * 2 1 3 5 5 N 1.47484 * 107.08114 * 242.31294 * 4 2 1 6 6 C 1.34780 * 127.03501 * 154.52273 * 5 4 2 7 7 O 1.21285 * 120.00038 * 180.02562 * 6 5 4 8 8 C 1.50697 * 119.99895 * 0.02562 * 6 5 4 9 9 C 1.53002 * 109.47217 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.59618 * 330.99991 * 9 8 6 11 11 C 1.52984 * 109.74262 * 91.41638 * 9 8 6 12 12 C 1.51770 * 110.87998 * 33.37366 * 11 9 8 13 13 C 1.51767 * 113.82703 * 66.98210 * 12 11 9 14 14 C 1.53056 * 110.76603 * 293.21974 * 13 12 11 15 15 C 1.51428 * 108.49284 * 84.89056 * 14 13 12 16 16 O 1.21283 * 119.88992 * 108.77897 * 15 14 13 17 17 N 1.33370 * 120.21662 * 288.76198 * 15 14 13 18 18 C 1.48117 * 105.93142 * 334.77556 * 5 4 2 19 19 C 1.54596 * 103.42208 * 39.02921 * 18 5 4 20 20 H 1.09004 * 110.73283 * 81.23719 * 19 18 5 21 21 C 1.52997 * 110.83413 * 204.44363 * 19 18 5 22 22 N 1.46502 * 109.47236 * 288.56010 * 21 19 18 23 23 C 1.36934 * 120.00234 * 180.02562 * 22 21 19 24 24 H 1.08000 * 120.00001 * 359.97438 * 23 22 21 25 25 C 1.38814 * 119.99958 * 180.02562 * 23 22 21 26 26 N 1.31614 * 120.00110 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99512 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47255 * 60.00028 * 27 25 23 29 29 H 1.48503 * 109.46529 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47290 * 299.99555 * 27 25 23 31 31 H 1.09004 * 109.47243 * 180.67501 * 1 2 3 32 32 H 1.08990 * 109.47179 * 300.67798 * 1 2 3 33 33 H 1.09000 * 109.47138 * 60.67922 * 1 2 3 34 34 H 1.08993 * 109.91284 * 122.95058 * 4 2 1 35 35 H 1.09002 * 109.91408 * 1.67128 * 4 2 1 36 36 H 1.08996 * 109.47442 * 60.00353 * 8 6 5 37 37 H 1.09003 * 109.46934 * 300.00002 * 8 6 5 38 38 H 1.09004 * 109.19273 * 153.73568 * 11 9 8 39 39 H 1.09002 * 109.19628 * 273.06055 * 11 9 8 40 40 H 1.09002 * 108.61573 * 188.11707 * 12 11 9 41 41 H 1.09003 * 108.61835 * 305.88044 * 12 11 9 42 42 H 1.09003 * 109.23590 * 172.87294 * 13 12 11 43 43 H 1.09004 * 109.19174 * 53.53950 * 13 12 11 44 44 H 1.09002 * 109.63052 * 325.19143 * 14 13 12 45 45 H 1.08993 * 109.63627 * 204.59909 * 14 13 12 46 46 H 0.96997 * 119.78380 * 179.72239 * 17 15 14 47 47 H 1.09000 * 110.65835 * 157.51003 * 18 5 4 48 48 H 1.09000 * 110.66779 * 280.62658 * 18 5 4 49 49 H 1.09001 * 109.47038 * 48.55866 * 21 19 18 50 50 H 1.09001 * 109.47189 * 168.56276 * 21 19 18 51 51 H 0.97001 * 119.99709 * 0.02562 * 22 21 19 52 52 H 0.97001 * 119.99930 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8297 -1.9203 -0.7103 6 6 3.0645 -3.0859 -1.3449 7 8 3.7140 -3.9531 -0.7998 8 6 2.5201 -3.3117 -2.7319 9 6 2.9264 -4.7041 -3.2188 10 1 3.8690 -4.9933 -2.7541 11 6 1.8406 -5.7172 -2.8514 12 6 0.4652 -5.0776 -2.8999 13 6 0.0247 -4.6759 -4.2956 14 6 0.8990 -3.5414 -4.8351 15 6 2.1409 -4.1456 -5.4560 16 8 2.2809 -4.1346 -6.6607 17 7 3.0814 -4.6896 -4.6825 18 6 3.2816 -1.5368 0.6471 19 6 2.0693 -0.7720 1.2262 20 1 1.3198 -1.4670 1.6050 21 6 2.5113 0.1967 2.3249 22 7 2.9042 -0.5614 3.5154 23 6 3.3383 0.0977 4.6344 24 1 3.3914 1.1763 4.6393 25 6 3.7111 -0.6207 5.7622 26 7 3.6469 -1.9353 5.7561 27 14 4.3039 0.2785 7.2885 28 1 3.2327 1.1833 7.7774 29 1 4.6381 -0.7090 8.3461 30 1 5.5116 1.0757 6.9556 31 1 -0.3634 -1.0276 0.0121 32 1 -0.3633 0.5243 0.8838 33 1 -0.3633 0.5032 -0.8960 34 1 2.7166 -0.1221 -1.8111 35 1 1.2333 -1.1172 -1.8350 36 1 2.9238 -2.5579 -3.4078 37 1 1.4329 -3.2370 -2.7120 38 1 1.8741 -6.5493 -3.5548 39 1 2.0257 -6.0916 -1.8445 40 1 -0.2609 -5.7827 -2.4953 41 1 0.4721 -4.1891 -2.2685 42 1 -1.0133 -4.3448 -4.2633 43 1 0.1053 -5.5374 -4.9586 44 1 1.1836 -2.8782 -4.0181 45 1 0.3475 -2.9812 -5.5900 46 1 3.8725 -5.0785 -5.0871 47 1 3.4980 -2.4222 1.2448 48 1 4.1541 -0.8857 0.5925 49 1 3.3590 0.7840 1.9720 50 1 1.6861 0.8636 2.5749 51 1 2.8569 -1.5302 3.5108 52 1 3.9071 -2.4373 6.5443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106920598.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:01 Heat of formation + Delta-G solvation = -46.924936 kcal Electronic energy + Delta-G solvation = -30630.553932 eV Core-core repulsion = 26630.586996 eV Total energy + Delta-G solvation = -3999.966936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.37448 -39.93037 -38.25920 -37.17556 -34.71751 -34.31990 -32.93012 -31.68992 -31.44675 -30.44736 -28.92468 -26.62791 -26.10901 -25.10714 -24.13674 -23.19945 -21.40257 -20.66362 -20.08281 -19.94401 -18.93920 -18.13888 -17.17252 -17.07236 -16.61465 -16.04515 -15.91631 -15.33764 -14.86276 -14.61392 -14.42361 -14.40529 -14.12693 -13.90932 -13.81311 -13.55144 -13.29917 -13.18099 -13.00316 -12.90950 -12.49271 -12.38319 -12.15888 -12.04071 -11.85050 -11.72868 -11.36351 -11.24526 -11.15912 -11.08760 -10.86943 -10.64443 -10.60183 -10.51863 -10.41208 -10.08257 -10.05241 -9.78813 -9.68858 -9.44931 -8.90036 -8.69000 -6.95277 -5.77692 -3.07262 2.34411 2.53949 2.74202 3.09525 3.43004 3.47392 3.48658 4.03919 4.17002 4.29481 4.36766 4.40164 4.49461 4.55251 4.64008 4.71317 4.79899 4.83316 4.92009 5.01622 5.07160 5.14577 5.20941 5.34961 5.36152 5.43773 5.43972 5.47287 5.53421 5.55602 5.61172 5.70498 5.73753 5.74773 5.80200 5.90621 5.91918 6.00648 6.06578 6.12684 6.13865 6.35506 6.41566 6.48976 6.66956 6.79260 6.96127 7.51640 7.67429 7.94843 8.07506 8.40497 9.51739 10.08489 10.42702 11.44825 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.002407 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.980563 B =11631.358046 C =12186.822702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.531 3.469 7 O -0.537 6.537 8 C -0.181 4.181 9 C 0.149 3.851 10 H 0.117 0.883 11 C -0.133 4.133 12 C -0.135 4.135 13 C -0.112 4.112 14 C -0.171 4.171 15 C 0.520 3.480 16 O -0.556 6.556 17 N -0.719 5.719 18 C 0.114 3.886 19 C -0.102 4.102 20 H 0.084 0.916 21 C 0.165 3.835 22 N -0.733 5.733 23 C -0.243 4.243 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.402 0.598 47 H 0.089 0.911 48 H 0.075 0.925 49 H 0.021 0.979 50 H 0.023 0.977 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 -2.585 -21.797 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.353 5.353 6 C 0.319 3.681 7 O -0.414 6.414 8 C -0.220 4.220 9 C 0.044 3.956 10 H 0.134 0.866 11 C -0.172 4.172 12 C -0.172 4.172 13 C -0.150 4.150 14 C -0.210 4.210 15 C 0.307 3.693 16 O -0.434 6.434 17 N -0.372 5.372 18 C -0.008 4.008 19 C -0.121 4.121 20 H 0.102 0.898 21 C 0.037 3.963 22 N -0.377 5.377 23 C -0.374 4.374 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.129 0.871 45 H 0.115 0.885 46 H 0.239 0.761 47 H 0.108 0.892 48 H 0.093 0.907 49 H 0.039 0.961 50 H 0.041 0.959 51 H 0.218 0.782 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.935 -2.939 -21.984 23.557 hybrid contribution 0.646 0.110 0.823 1.052 sum -7.290 -2.829 -21.162 22.560 Atomic orbital electron populations 1.21837 0.94093 1.01951 1.02016 1.22095 0.96384 0.99835 0.93750 0.89374 1.22252 0.95259 0.87603 0.96918 1.48856 1.53452 1.14579 1.18424 1.19996 0.80256 0.80543 0.87259 1.90736 1.40460 1.42471 1.67753 1.22962 1.04981 0.99008 0.95046 1.21159 1.01830 0.93588 0.78982 0.86551 1.21777 0.93715 0.98192 1.03467 1.21340 0.97226 1.01663 0.96952 1.21221 0.99324 0.97811 0.96629 1.22689 0.94874 1.00048 1.03433 1.20569 0.84671 0.77441 0.86660 1.90751 1.79072 1.58769 1.14854 1.46135 1.23200 1.60480 1.07337 1.22528 0.96867 1.00196 0.81164 1.22512 0.97064 0.97867 0.94677 0.89785 1.20627 0.96562 0.92738 0.86398 1.42360 1.79213 1.05938 1.10196 1.19152 1.36148 0.91215 0.90865 0.91246 1.24748 1.02288 0.95488 0.98320 1.69647 1.54194 1.04556 1.29591 0.86274 0.78618 0.78368 0.82941 1.21279 1.21685 1.21260 0.92631 0.91786 0.92708 0.91426 0.91033 0.88211 0.85306 0.90853 0.89588 0.91033 0.91000 0.90386 0.91504 0.87133 0.88510 0.76149 0.89229 0.90716 0.96135 0.95911 0.78214 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.90 37.16 0.33 -0.92 16 2 C -0.10 -1.03 3.17 -89.25 -0.28 -1.31 16 3 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 4 C 0.10 0.91 6.42 -2.98 -0.02 0.89 16 5 N -0.62 -7.44 3.29 -169.98 -0.56 -8.00 16 6 C 0.53 6.47 7.88 -10.99 -0.09 6.39 16 7 O -0.54 -8.64 15.59 5.55 0.09 -8.55 16 8 C -0.18 -1.44 2.37 -27.88 -0.07 -1.51 16 9 C 0.15 1.20 3.11 -67.56 -0.21 0.99 16 10 H 0.12 1.09 6.90 -51.93 -0.36 0.73 16 11 C -0.13 -0.99 5.56 -27.36 -0.15 -1.14 16 12 C -0.13 -0.85 5.18 -27.98 -0.15 -1.00 16 13 C -0.11 -0.67 5.66 -27.33 -0.15 -0.83 16 14 C -0.17 -1.17 5.52 -27.50 -0.15 -1.32 16 15 C 0.52 5.12 6.67 -11.25 -0.08 5.04 16 16 O -0.56 -7.84 17.92 5.55 0.10 -7.74 16 17 N -0.72 -5.85 5.09 -53.45 -0.27 -6.12 16 18 C 0.11 1.72 6.44 -2.31 -0.01 1.70 16 19 C -0.10 -1.46 2.61 -88.93 -0.23 -1.69 16 20 H 0.08 1.31 7.86 -51.93 -0.41 0.91 16 21 C 0.16 3.04 5.58 -4.04 -0.02 3.02 16 22 N -0.73 -17.88 5.52 -59.91 -0.33 -18.21 16 23 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 24 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 27 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.46 7.08 -51.93 -0.37 0.09 16 36 H 0.10 0.72 7.46 -51.93 -0.39 0.33 16 37 H 0.13 0.82 2.52 -51.93 -0.13 0.69 16 38 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.45 5.56 -51.93 -0.29 0.16 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.47 7.86 -51.93 -0.41 0.06 16 44 H 0.11 0.60 3.65 -51.93 -0.19 0.41 16 45 H 0.10 0.64 8.13 -51.93 -0.42 0.22 16 46 H 0.40 3.00 8.91 -40.82 -0.36 2.64 16 47 H 0.09 1.62 7.85 -51.93 -0.41 1.21 16 48 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 49 H 0.02 0.38 7.99 -51.93 -0.41 -0.03 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 51 H 0.38 9.97 7.67 -40.82 -0.31 9.66 16 52 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -34.45 396.46 -9.46 -43.91 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -8.63 Total: 7.79 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.53 Total: 1.07 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.44 Total: -59.61 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.19 Total: -16.29 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.45 -9.46 -43.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106920598.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.019 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds