Wall clock time and date at job start Tue Mar 31 2020 19:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.28544 * 2 1 4 4 C 1.54003 * 110.32537 * 237.86803 * 2 1 3 5 5 N 1.47484 * 107.08114 * 242.31294 * 4 2 1 6 6 C 1.34780 * 127.03501 * 154.52273 * 5 4 2 7 7 O 1.21285 * 120.00038 * 180.02562 * 6 5 4 8 8 C 1.50697 * 119.99895 * 0.02562 * 6 5 4 9 9 C 1.53002 * 109.47217 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.59618 * 330.99991 * 9 8 6 11 11 C 1.52984 * 109.74262 * 91.41638 * 9 8 6 12 12 C 1.51770 * 110.87998 * 33.37366 * 11 9 8 13 13 C 1.51767 * 113.82703 * 66.98210 * 12 11 9 14 14 C 1.53056 * 110.76603 * 293.21974 * 13 12 11 15 15 C 1.51428 * 108.49284 * 84.89056 * 14 13 12 16 16 O 1.21283 * 119.88992 * 108.77897 * 15 14 13 17 17 N 1.33370 * 120.21662 * 288.76198 * 15 14 13 18 18 C 1.48117 * 105.93142 * 334.77556 * 5 4 2 19 19 C 1.54596 * 103.42208 * 39.02921 * 18 5 4 20 20 H 1.09004 * 110.73283 * 81.23719 * 19 18 5 21 21 C 1.52997 * 110.83413 * 204.44363 * 19 18 5 22 22 N 1.46502 * 109.47236 * 288.56010 * 21 19 18 23 23 C 1.36934 * 120.00234 * 180.02562 * 22 21 19 24 24 H 1.08000 * 120.00001 * 359.97438 * 23 22 21 25 25 C 1.38814 * 119.99958 * 180.02562 * 23 22 21 26 26 N 1.31614 * 120.00110 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99512 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47255 * 60.00028 * 27 25 23 29 29 H 1.48503 * 109.46529 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47290 * 299.99555 * 27 25 23 31 31 H 1.09004 * 109.47243 * 180.67501 * 1 2 3 32 32 H 1.08990 * 109.47179 * 300.67798 * 1 2 3 33 33 H 1.09000 * 109.47138 * 60.67922 * 1 2 3 34 34 H 1.08993 * 109.91284 * 122.95058 * 4 2 1 35 35 H 1.09002 * 109.91408 * 1.67128 * 4 2 1 36 36 H 1.08996 * 109.47442 * 60.00353 * 8 6 5 37 37 H 1.09003 * 109.46934 * 300.00002 * 8 6 5 38 38 H 1.09004 * 109.19273 * 153.73568 * 11 9 8 39 39 H 1.09002 * 109.19628 * 273.06055 * 11 9 8 40 40 H 1.09002 * 108.61573 * 188.11707 * 12 11 9 41 41 H 1.09003 * 108.61835 * 305.88044 * 12 11 9 42 42 H 1.09003 * 109.23590 * 172.87294 * 13 12 11 43 43 H 1.09004 * 109.19174 * 53.53950 * 13 12 11 44 44 H 1.09002 * 109.63052 * 325.19143 * 14 13 12 45 45 H 1.08993 * 109.63627 * 204.59909 * 14 13 12 46 46 H 0.96997 * 119.78380 * 179.72239 * 17 15 14 47 47 H 1.09000 * 110.65835 * 157.51003 * 18 5 4 48 48 H 1.09000 * 110.66779 * 280.62658 * 18 5 4 49 49 H 1.09001 * 109.47038 * 48.55866 * 21 19 18 50 50 H 1.09001 * 109.47189 * 168.56276 * 21 19 18 51 51 H 0.97001 * 119.99709 * 0.02562 * 22 21 19 52 52 H 0.97001 * 119.99930 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8297 -1.9203 -0.7103 6 6 3.0645 -3.0859 -1.3449 7 8 3.7140 -3.9531 -0.7998 8 6 2.5201 -3.3117 -2.7319 9 6 2.9264 -4.7041 -3.2188 10 1 3.8690 -4.9933 -2.7541 11 6 1.8406 -5.7172 -2.8514 12 6 0.4652 -5.0776 -2.8999 13 6 0.0247 -4.6759 -4.2956 14 6 0.8990 -3.5414 -4.8351 15 6 2.1409 -4.1456 -5.4560 16 8 2.2809 -4.1346 -6.6607 17 7 3.0814 -4.6896 -4.6825 18 6 3.2816 -1.5368 0.6471 19 6 2.0693 -0.7720 1.2262 20 1 1.3198 -1.4670 1.6050 21 6 2.5113 0.1967 2.3249 22 7 2.9042 -0.5614 3.5154 23 6 3.3383 0.0977 4.6344 24 1 3.3914 1.1763 4.6393 25 6 3.7111 -0.6207 5.7622 26 7 3.6469 -1.9353 5.7561 27 14 4.3039 0.2785 7.2885 28 1 3.2327 1.1833 7.7774 29 1 4.6381 -0.7090 8.3461 30 1 5.5116 1.0757 6.9556 31 1 -0.3634 -1.0276 0.0121 32 1 -0.3633 0.5243 0.8838 33 1 -0.3633 0.5032 -0.8960 34 1 2.7166 -0.1221 -1.8111 35 1 1.2333 -1.1172 -1.8350 36 1 2.9238 -2.5579 -3.4078 37 1 1.4329 -3.2370 -2.7120 38 1 1.8741 -6.5493 -3.5548 39 1 2.0257 -6.0916 -1.8445 40 1 -0.2609 -5.7827 -2.4953 41 1 0.4721 -4.1891 -2.2685 42 1 -1.0133 -4.3448 -4.2633 43 1 0.1053 -5.5374 -4.9586 44 1 1.1836 -2.8782 -4.0181 45 1 0.3475 -2.9812 -5.5900 46 1 3.8725 -5.0785 -5.0871 47 1 3.4980 -2.4222 1.2448 48 1 4.1541 -0.8857 0.5925 49 1 3.3590 0.7840 1.9720 50 1 1.6861 0.8636 2.5749 51 1 2.8569 -1.5302 3.5108 52 1 3.9071 -2.4373 6.5443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106920598.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:00 Heat of formation + Delta-G solvation = -71.339159 kcal Electronic energy + Delta-G solvation = -30631.612612 eV Core-core repulsion = 26630.586996 eV Total energy + Delta-G solvation = -4001.025616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.12574 -40.87919 -39.25963 -38.03639 -36.43781 -34.93585 -34.17670 -33.01519 -32.36198 -31.37182 -30.20159 -27.46734 -27.14149 -26.20785 -25.02332 -24.61836 -22.64241 -21.40003 -21.08629 -20.73656 -19.77753 -19.13934 -18.77652 -17.87778 -17.55715 -17.07806 -16.77646 -16.47021 -16.19082 -15.72576 -15.42610 -15.16444 -15.10353 -15.00720 -14.86122 -14.66084 -14.52917 -14.14795 -13.94854 -13.68706 -13.61059 -13.33432 -13.13289 -12.98932 -12.87400 -12.72625 -12.61725 -12.40590 -12.36161 -12.15876 -11.93948 -11.83390 -11.71156 -11.63446 -11.48082 -11.42069 -11.24918 -10.93091 -10.88681 -10.65966 -10.19412 -9.69321 -8.98958 -7.94029 -5.23061 1.47352 1.50428 1.56541 1.56644 1.62660 1.85300 2.34736 2.56634 3.33509 3.39718 3.47749 3.56236 3.62418 3.71510 3.81243 3.87103 3.89212 4.08036 4.13765 4.25088 4.29254 4.34340 4.43166 4.44651 4.47249 4.56944 4.61516 4.61774 4.73709 4.79722 4.84153 4.89736 4.90850 4.94557 4.99069 5.09880 5.10551 5.12198 5.23364 5.24602 5.26958 5.30427 5.40763 5.41660 5.50255 5.59780 5.80195 6.26372 6.27662 6.58495 7.11253 7.22045 7.33860 8.10777 8.32063 9.29354 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.002407 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.980563 B =11631.358046 C =12186.822702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.098 0.902 4 C 0.100 3.900 5 N -0.618 5.618 6 C 0.527 3.473 7 O -0.585 6.585 8 C -0.168 4.168 9 C 0.153 3.847 10 H 0.101 0.899 11 C -0.132 4.132 12 C -0.133 4.133 13 C -0.107 4.107 14 C -0.166 4.166 15 C 0.516 3.484 16 O -0.604 6.604 17 N -0.711 5.711 18 C 0.117 3.883 19 C -0.092 4.092 20 H 0.069 0.931 21 C 0.163 3.837 22 N -0.748 5.748 23 C -0.244 4.244 24 H 0.078 0.922 25 C -0.078 4.078 26 N -0.971 5.971 27 Si 0.973 3.027 28 H -0.275 1.275 29 H -0.298 1.298 30 H -0.278 1.278 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.155 0.845 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.129 0.871 45 H 0.104 0.896 46 H 0.403 0.597 47 H 0.046 0.954 48 H 0.067 0.933 49 H 0.025 0.975 50 H 0.030 0.970 51 H 0.372 0.628 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.085 -0.505 -23.511 25.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.116 0.884 4 C -0.021 4.021 5 N -0.351 5.351 6 C 0.317 3.683 7 O -0.466 6.466 8 C -0.206 4.206 9 C 0.048 3.952 10 H 0.119 0.881 11 C -0.171 4.171 12 C -0.170 4.170 13 C -0.145 4.145 14 C -0.205 4.205 15 C 0.304 3.696 16 O -0.486 6.486 17 N -0.361 5.361 18 C -0.006 4.006 19 C -0.112 4.112 20 H 0.087 0.913 21 C 0.037 3.963 22 N -0.390 5.390 23 C -0.376 4.376 24 H 0.096 0.904 25 C -0.270 4.270 26 N -0.622 5.622 27 Si 0.802 3.198 28 H -0.201 1.201 29 H -0.224 1.224 30 H -0.204 1.204 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.137 0.863 37 H 0.172 0.828 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.119 0.881 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.123 0.877 46 H 0.240 0.760 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.043 0.957 50 H 0.047 0.953 51 H 0.203 0.797 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.792 -0.799 -23.724 25.677 hybrid contribution 1.246 -0.538 1.332 1.902 sum -8.545 -1.336 -22.392 24.004 Atomic orbital electron populations 1.21833 0.92561 1.02249 1.02965 1.22096 0.97576 0.99799 0.91708 0.88356 1.22546 0.96484 0.86507 0.96586 1.48908 1.53482 1.15613 1.17068 1.20744 0.79439 0.79747 0.88402 1.90724 1.42635 1.44093 1.69153 1.23006 1.06207 0.99201 0.92223 1.21074 1.01467 0.94074 0.78594 0.88147 1.21747 0.94509 0.98217 1.02596 1.21339 0.96266 1.01967 0.97446 1.21215 1.00372 0.97160 0.95750 1.22738 0.93389 1.00378 1.04000 1.21161 0.85438 0.76881 0.86090 1.90733 1.80138 1.60792 1.16903 1.46126 1.23070 1.59709 1.07243 1.22225 0.97180 0.98310 0.82889 1.22320 0.96368 0.97211 0.95299 0.91294 1.20809 0.96606 0.93280 0.85606 1.42622 1.79217 1.05704 1.11457 1.19612 1.34498 0.91781 0.91682 0.90378 1.25590 1.03597 0.96240 1.01569 1.69821 1.56178 1.06126 1.30064 0.85217 0.78422 0.77099 0.79064 1.20146 1.22448 1.20395 0.92629 0.93160 0.89530 0.89224 0.87311 0.86324 0.82812 0.90793 0.91008 0.90350 0.90390 0.88106 0.92636 0.85318 0.87720 0.76003 0.93509 0.91452 0.95696 0.95255 0.79697 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.90 71.98 0.64 -1.27 16 2 C -0.09 -1.59 3.17 -9.90 -0.03 -1.62 16 3 H 0.10 1.55 7.85 -2.39 -0.02 1.53 16 4 C 0.10 1.35 6.42 86.53 0.56 1.91 16 5 N -0.62 -13.93 3.29 -810.09 -2.67 -16.60 16 6 C 0.53 12.33 7.88 87.66 0.69 13.02 16 7 O -0.59 -19.49 15.59 -3.05 -0.05 -19.53 16 8 C -0.17 -2.24 2.37 29.85 0.07 -2.17 16 9 C 0.15 2.30 3.11 44.85 0.14 2.44 16 10 H 0.10 1.91 6.90 -2.39 -0.02 1.90 16 11 C -0.13 -1.84 5.56 30.18 0.17 -1.67 16 12 C -0.13 -1.33 5.18 29.78 0.15 -1.17 16 13 C -0.11 -0.94 5.66 30.21 0.17 -0.77 16 14 C -0.17 -1.69 5.52 30.10 0.17 -1.52 16 15 C 0.52 9.25 6.67 88.11 0.59 9.84 16 16 O -0.60 -16.54 17.92 -3.04 -0.05 -16.59 16 17 N -0.71 -10.76 5.09 -442.18 -2.25 -13.01 16 18 C 0.12 3.61 6.44 86.61 0.56 4.16 16 19 C -0.09 -2.61 2.61 -9.70 -0.03 -2.64 16 20 H 0.07 2.18 7.86 -2.38 -0.02 2.16 16 21 C 0.16 5.99 5.58 86.38 0.48 6.48 16 22 N -0.75 -37.31 5.52 -343.45 -1.90 -39.21 16 23 C -0.24 -13.48 9.99 84.03 0.84 -12.64 16 24 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 25 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 26 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 27 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 28 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 29 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 30 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 0.73 7.08 -2.39 -0.02 0.71 16 36 H 0.12 1.23 7.46 -2.39 -0.02 1.21 16 37 H 0.16 1.30 2.52 -2.39 -0.01 1.29 16 38 H 0.07 1.01 8.05 -2.38 -0.02 0.99 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.69 5.56 -2.39 -0.01 0.68 16 42 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.05 0.65 7.86 -2.39 -0.02 0.63 16 44 H 0.13 0.77 3.65 -2.39 -0.01 0.76 16 45 H 0.10 0.98 8.13 -2.39 -0.02 0.96 16 46 H 0.40 5.88 8.91 -92.71 -0.83 5.05 16 47 H 0.05 1.83 7.85 -2.39 -0.02 1.81 16 48 H 0.07 2.14 7.93 -2.39 -0.02 2.12 16 49 H 0.03 0.91 7.99 -2.39 -0.02 0.89 16 50 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.37 20.18 7.67 -92.71 -0.71 19.47 16 52 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -78.96 396.46 0.43 -78.53 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.60 Total: 29.86 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.63 Total: 8.36 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -6.53 Total: -128.74 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.10 Total: -36.13 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -78.96 0.43 -78.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106920598.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.190 kcal (2) G-P(sol) polarization free energy of solvation -78.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds