Wall clock time and date at job start Tue Mar 31 2020 19:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.65880 * 2 1 4 4 C 1.54597 * 110.98469 * 236.84594 * 2 1 3 5 5 N 1.48119 * 103.42186 * 204.37266 * 4 2 1 6 6 C 1.34776 * 127.03650 * 219.28515 * 5 4 2 7 7 O 1.21282 * 120.00173 * 179.68659 * 6 5 4 8 8 C 1.50697 * 119.99801 * 359.68713 * 6 5 4 9 9 N 1.46496 * 109.47273 * 179.97438 * 8 6 5 10 10 C 1.47203 * 119.78710 * 89.99723 * 9 8 6 11 11 C 1.52985 * 108.66115 * 108.04434 * 10 9 8 12 12 C 1.51786 * 110.88485 * 86.46970 * 11 10 9 13 13 C 1.51788 * 113.80875 * 292.99503 * 12 11 10 14 14 C 1.52980 * 110.75539 * 66.79229 * 13 12 11 15 15 C 1.33367 * 119.79038 * 269.97713 * 9 8 6 16 16 O 1.21280 * 119.89101 * 0.28377 * 15 9 8 17 17 C 1.47491 * 105.93193 * 39.02409 * 5 4 2 18 18 C 1.53999 * 107.08098 * 334.77915 * 17 5 4 19 19 H 1.09003 * 110.32736 * 120.20031 * 18 17 5 20 20 C 1.53005 * 110.32751 * 242.30748 * 18 17 5 21 21 N 1.46500 * 109.47132 * 293.55075 * 20 18 17 22 22 C 1.36932 * 119.99885 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00101 * 359.97438 * 22 21 20 24 24 C 1.38819 * 120.00179 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00226 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99612 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47183 * 89.99933 * 26 24 22 28 28 H 1.48507 * 109.46822 * 209.99995 * 26 24 22 29 29 H 1.48504 * 109.47151 * 329.99692 * 26 24 22 30 30 H 1.09004 * 109.46669 * 296.80899 * 1 2 3 31 31 H 1.08992 * 109.46741 * 56.80152 * 1 2 3 32 32 H 1.08992 * 109.46996 * 176.80896 * 1 2 3 33 33 H 1.08996 * 110.61880 * 85.86589 * 4 2 1 34 34 H 1.08995 * 110.54765 * 322.85199 * 4 2 1 35 35 H 1.08997 * 109.47454 * 59.99955 * 8 6 5 36 36 H 1.09000 * 109.47271 * 299.99714 * 8 6 5 37 37 H 1.09000 * 109.60315 * 348.29008 * 10 9 8 38 38 H 1.09001 * 109.60716 * 227.79831 * 10 9 8 39 39 H 1.08996 * 109.19816 * 326.10725 * 11 10 9 40 40 H 1.09004 * 109.19696 * 206.82764 * 11 10 9 41 41 H 1.09000 * 108.60923 * 54.11465 * 12 11 10 42 42 H 1.08996 * 108.61323 * 171.87130 * 12 11 10 43 43 H 1.09001 * 109.22554 * 187.12943 * 13 12 11 44 44 H 1.08996 * 109.22113 * 306.48282 * 13 12 11 45 45 H 1.08997 * 109.60469 * 155.39738 * 14 13 12 46 46 H 1.09003 * 109.79645 * 34.91833 * 14 13 12 47 47 H 1.09001 * 109.91223 * 94.13979 * 17 5 4 48 48 H 1.09000 * 109.91481 * 215.41886 * 17 5 4 49 49 H 1.09006 * 109.46453 * 53.54755 * 20 18 17 50 50 H 1.08990 * 109.47223 * 173.54839 * 20 18 17 51 51 H 0.96999 * 120.00291 * 0.02562 * 21 20 18 52 52 H 0.97003 * 120.00339 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0837 -0.7894 -1.2084 5 7 3.4321 -1.2057 -0.7586 6 6 4.5593 -1.2406 -1.4966 7 8 5.6026 -1.6002 -0.9936 8 6 4.5232 -0.8328 -2.9469 9 7 5.8645 -0.9572 -3.5227 10 6 6.2792 -2.2260 -4.1430 11 6 6.3372 -2.0335 -5.6596 12 6 7.6887 -1.4888 -6.0847 13 6 7.9580 -0.0745 -5.6039 14 6 8.0880 -0.0354 -4.0802 15 6 6.7018 0.0801 -3.4819 16 8 6.3517 1.1195 -2.9642 17 6 3.2903 -1.5681 0.6641 18 6 2.0776 -0.7916 1.2100 19 1 1.3222 -1.4830 1.5834 20 6 2.5155 0.1658 2.3202 21 7 2.9827 -0.6059 3.4745 22 6 3.4278 0.0414 4.5960 23 1 3.4348 1.1209 4.6295 24 6 3.8701 -0.6898 5.6900 25 7 4.2983 -0.0676 6.7678 26 14 3.8586 -2.5569 5.6318 27 1 5.1554 -3.0434 5.0963 28 1 3.6559 -3.0936 7.0015 29 1 2.7552 -3.0179 4.7512 30 1 -0.3633 0.4635 0.9173 31 1 -0.3632 0.5627 -0.8599 32 1 -0.3633 -1.0260 -0.0572 33 1 2.1525 -0.1480 -2.0870 34 1 1.4611 -1.6601 -1.4143 35 1 4.1890 0.2017 -3.0253 36 1 3.8333 -1.4795 -3.4891 37 1 5.5565 -3.0051 -3.9006 38 1 7.2643 -2.5095 -3.7724 39 1 5.5578 -1.3343 -5.9622 40 1 6.1672 -2.9924 -6.1494 41 1 8.4667 -2.1438 -5.6925 42 1 7.7426 -1.5026 -7.1732 43 1 8.8834 0.2870 -6.0525 44 1 7.1353 0.5714 -5.9103 45 1 8.6868 0.8267 -3.7862 46 1 8.5645 -0.9498 -3.7267 47 1 3.1178 -2.6403 0.7586 48 1 4.1895 -1.2845 1.2109 49 1 3.3240 0.7995 1.9554 50 1 1.6715 0.7884 2.6169 51 1 2.9775 -1.5754 3.4440 52 1 4.6070 -0.5786 7.5324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106961014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:35 Heat of formation + Delta-G solvation = -58.885259 kcal Electronic energy + Delta-G solvation = -30413.935847 eV Core-core repulsion = 26413.450272 eV Total energy + Delta-G solvation = -4000.485574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.89913 -39.82437 -37.88957 -36.97591 -34.86203 -34.79773 -32.90316 -31.54702 -31.42669 -30.04726 -28.83788 -26.63827 -26.28891 -25.21968 -24.15581 -22.93748 -21.19314 -21.00336 -20.19896 -19.60614 -18.79581 -17.70513 -17.55171 -17.23063 -16.81662 -16.05141 -15.61814 -15.00063 -14.64461 -14.57207 -14.48193 -14.32023 -14.19169 -13.89871 -13.76734 -13.74235 -13.19271 -13.08640 -12.88070 -12.74558 -12.58797 -12.51119 -12.24034 -12.06340 -11.86511 -11.78786 -11.54318 -11.42093 -11.28941 -11.18916 -11.06295 -10.95317 -10.67558 -10.54081 -10.28278 -10.11848 -10.06773 -9.87303 -9.54390 -8.92737 -8.86013 -8.64264 -7.19725 -5.72396 -3.08024 2.36251 2.62311 2.64866 3.11916 3.40097 3.44189 3.48613 4.11189 4.31307 4.34829 4.36564 4.42901 4.46745 4.63294 4.70655 4.76944 4.82916 4.88440 4.95645 5.02554 5.08264 5.12357 5.22615 5.27981 5.29682 5.35853 5.39576 5.44204 5.48286 5.56213 5.57147 5.64205 5.65269 5.67531 5.73847 5.81931 5.83933 5.87956 6.03408 6.05855 6.10740 6.17582 6.29928 6.38603 6.65661 6.79910 7.12481 7.54596 7.99867 8.03366 8.18248 8.46308 9.25054 9.97327 10.16683 11.46140 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.002748 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.326900 B =10186.877081 C =11117.961954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.087 0.913 4 C 0.102 3.898 5 N -0.619 5.619 6 C 0.513 3.487 7 O -0.529 6.529 8 C 0.100 3.900 9 N -0.592 5.592 10 C 0.114 3.886 11 C -0.140 4.140 12 C -0.123 4.123 13 C -0.112 4.112 14 C -0.137 4.137 15 C 0.522 3.478 16 O -0.543 6.543 17 C 0.109 3.891 18 C -0.107 4.107 19 H 0.086 0.914 20 C 0.167 3.833 21 N -0.756 5.756 22 C -0.243 4.243 23 H 0.090 0.910 24 C 0.004 3.996 25 N -0.934 5.934 26 Si 0.883 3.117 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.061 0.939 48 H 0.089 0.911 49 H 0.028 0.972 50 H 0.031 0.969 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 -5.527 -32.203 32.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.021 4.021 5 N -0.354 5.354 6 C 0.300 3.700 7 O -0.404 6.404 8 C -0.027 4.027 9 N -0.324 5.324 10 C -0.009 4.009 11 C -0.178 4.178 12 C -0.160 4.160 13 C -0.150 4.150 14 C -0.177 4.177 15 C 0.310 3.690 16 O -0.420 6.420 17 C -0.014 4.014 18 C -0.126 4.126 19 H 0.104 0.896 20 C 0.039 3.961 21 N -0.401 5.401 22 C -0.373 4.373 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.714 3.286 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.110 0.890 47 H 0.080 0.920 48 H 0.107 0.893 49 H 0.046 0.954 50 H 0.049 0.951 51 H 0.193 0.807 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.947 -4.994 -31.570 31.976 hybrid contribution -0.030 -1.461 0.274 1.486 sum -0.977 -6.454 -31.296 31.970 Atomic orbital electron populations 1.21729 0.93690 1.01947 1.02337 1.22224 0.96108 0.99984 0.93656 0.89470 1.22604 0.83139 0.98548 0.97784 1.48824 1.08155 1.66307 1.12149 1.20744 0.82427 0.78152 0.88648 1.90730 1.29628 1.47197 1.72862 1.21286 0.85558 1.04840 0.91014 1.47421 1.13825 1.13598 1.57570 1.21845 1.02021 0.84976 0.92041 1.21826 0.98304 1.02116 0.95556 1.21186 0.97335 0.96304 1.01224 1.21211 1.02843 0.97433 0.93506 1.21971 0.93892 1.05239 0.96562 1.20556 0.87200 0.82867 0.78351 1.90739 1.77197 1.29209 1.44811 1.22187 1.00284 0.98447 0.80445 1.22438 0.96526 0.98079 0.95579 0.89584 1.20680 0.96772 0.92659 0.85945 1.42711 1.78886 1.04236 1.14309 1.19051 1.34496 0.93189 0.90549 0.89229 1.24668 1.01071 0.97287 0.96112 1.69701 1.49198 1.34265 1.05078 0.86559 0.77896 0.87425 0.76749 1.20988 1.21716 1.20357 0.91640 0.92538 0.92489 0.90379 0.90737 0.86904 0.87704 0.89726 0.90127 0.91123 0.90398 0.91639 0.91609 0.90571 0.91564 0.88368 0.89040 0.92026 0.89276 0.95365 0.95137 0.80725 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.17 37.16 0.34 -0.91 16 2 C -0.10 -1.12 3.19 -88.93 -0.28 -1.41 16 3 H 0.09 1.07 7.87 -51.93 -0.41 0.66 16 4 C 0.10 0.99 6.38 -2.31 -0.01 0.97 16 5 N -0.62 -8.53 3.29 -169.98 -0.56 -9.09 16 6 C 0.51 7.69 7.96 -10.99 -0.09 7.60 16 7 O -0.53 -10.33 16.77 5.56 0.09 -10.23 16 8 C 0.10 1.05 4.73 -5.20 -0.02 1.03 16 9 N -0.59 -6.34 1.94 -174.60 -0.34 -6.68 16 10 C 0.11 0.82 5.88 -3.67 -0.02 0.80 16 11 C -0.14 -0.68 5.73 -27.35 -0.16 -0.84 16 12 C -0.12 -0.58 5.27 -27.96 -0.15 -0.73 16 13 C -0.11 -0.70 5.66 -27.36 -0.15 -0.85 16 14 C -0.14 -1.23 5.56 -27.54 -0.15 -1.38 16 15 C 0.52 6.74 6.79 -11.26 -0.08 6.66 16 16 O -0.54 -9.46 16.60 5.56 0.09 -9.37 16 17 C 0.11 1.75 6.31 -2.98 -0.02 1.73 16 18 C -0.11 -1.59 2.64 -89.25 -0.24 -1.83 16 19 H 0.09 1.23 7.85 -51.93 -0.41 0.82 16 20 C 0.17 3.29 5.35 -4.04 -0.02 3.27 16 21 N -0.76 -18.51 5.13 -59.91 -0.31 -18.82 16 22 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 23 H 0.09 2.82 8.06 -52.48 -0.42 2.40 16 24 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 25 N -0.93 -30.28 13.97 55.49 0.78 -29.50 16 26 Si 0.88 22.85 27.73 -169.99 -4.71 18.14 16 27 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 29 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.47 8.11 -51.93 -0.42 0.04 16 33 H 0.08 0.58 7.23 -51.93 -0.38 0.20 16 34 H 0.07 0.58 8.02 -51.93 -0.42 0.17 16 35 H 0.11 1.23 7.14 -51.93 -0.37 0.86 16 36 H 0.10 0.69 8.03 -51.93 -0.42 0.28 16 37 H 0.08 0.54 7.92 -51.93 -0.41 0.13 16 38 H 0.08 0.60 6.72 -51.93 -0.35 0.25 16 39 H 0.07 0.38 8.05 -51.93 -0.42 -0.04 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.06 0.28 7.89 -51.93 -0.41 -0.13 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.47 7.86 -51.93 -0.41 0.06 16 45 H 0.10 0.91 8.13 -51.93 -0.42 0.49 16 46 H 0.09 0.73 6.79 -51.93 -0.35 0.37 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.09 1.81 7.48 -51.93 -0.39 1.42 16 49 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.36 8.58 5.37 -40.82 -0.22 8.36 16 52 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 404.75 15.07 6.10 6.10 Total: -1.00 -39.00 404.75 -9.34 -48.34 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -9.17 Total: 4.27 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.31 Total: 6.85 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: -0.43 Total: -64.09 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.19 Total: -19.60 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.14 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.00 -9.34 -48.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106961014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.548 kcal (2) G-P(sol) polarization free energy of solvation -38.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds