Wall clock time and date at job start Tue Mar 31 2020 19:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21287 * 119.99846 * 2 1 4 4 N 1.34773 * 120.00049 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.62899 * 180.02562 * 4 2 1 6 6 C 1.53188 * 108.77648 * 126.37301 * 5 4 2 7 7 C 1.53041 * 109.31567 * 54.63298 * 6 5 4 8 8 C 1.50694 * 109.46366 * 178.61311 * 7 6 5 9 9 O 1.21287 * 119.99734 * 26.43197 * 8 7 6 10 10 N 1.34775 * 120.00241 * 206.42446 * 8 7 6 11 11 C 1.47482 * 127.03389 * 185.29955 * 10 8 7 12 12 C 1.54005 * 107.08570 * 154.51985 * 11 10 8 13 13 H 1.08995 * 110.32881 * 120.19800 * 12 11 10 14 14 C 1.53002 * 110.32638 * 242.31445 * 12 11 10 15 15 N 1.46510 * 109.46867 * 293.54246 * 14 12 11 16 16 C 1.36934 * 119.99886 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00062 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99775 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00354 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99721 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47173 * 90.00303 * 20 18 16 22 22 H 1.48506 * 109.46830 * 209.99532 * 20 18 16 23 23 H 1.48490 * 109.47368 * 330.00076 * 20 18 16 24 24 C 1.54620 * 105.04494 * 1.30226 * 12 11 10 25 25 H 1.08996 * 110.74245 * 263.51764 * 24 12 11 26 26 C 1.52997 * 110.73816 * 140.36499 * 24 12 11 27 27 C 1.48114 * 127.03126 * 4.98485 * 10 8 7 28 28 C 1.53042 * 109.53727 * 298.64021 * 7 6 5 29 29 C 1.46924 * 120.63178 * 359.97438 * 4 2 1 30 30 H 1.09003 * 109.47491 * 240.00368 * 1 2 3 31 31 H 1.08998 * 109.47357 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.47212 * 120.00312 * 1 2 3 33 33 H 1.08999 * 109.58756 * 6.58041 * 5 4 2 34 34 H 1.09006 * 109.70369 * 246.22902 * 5 4 2 35 35 H 1.08996 * 109.49758 * 174.58488 * 6 5 4 36 36 H 1.08999 * 109.49857 * 294.68204 * 6 5 4 37 37 H 1.09004 * 109.46023 * 58.65237 * 7 6 5 38 38 H 1.08998 * 109.91745 * 273.87730 * 11 10 8 39 39 H 1.09000 * 109.91500 * 35.16065 * 11 10 8 40 40 H 1.08995 * 109.47318 * 53.54122 * 14 12 11 41 41 H 1.09003 * 109.47092 * 173.54367 * 14 12 11 42 42 H 0.96995 * 119.99910 * 0.02562 * 15 14 12 43 43 H 0.96995 * 119.99971 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.47149 * 60.00818 * 26 24 12 45 45 H 1.09008 * 109.46844 * 180.02562 * 26 24 12 46 46 H 1.08993 * 109.47460 * 300.00580 * 26 24 12 47 47 H 1.08997 * 110.66603 * 337.76479 * 27 10 8 48 48 H 1.08999 * 110.66553 * 100.88918 * 27 10 8 49 49 H 1.09002 * 109.49251 * 301.41084 * 28 7 6 50 50 H 1.08999 * 109.52721 * 181.33712 * 28 7 6 51 51 H 1.09005 * 109.58663 * 353.41885 * 29 4 2 52 52 H 1.09003 * 109.58642 * 113.83676 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6500 -1.1833 0.0011 6 6 4.1332 -2.0485 1.1693 7 6 3.4895 -3.4336 1.0734 8 6 3.9888 -4.2986 2.2019 9 8 4.3656 -3.7886 3.2358 10 7 4.0166 -5.6388 2.0623 11 6 4.3686 -6.6322 3.0940 12 6 3.6644 -7.9481 2.7139 13 1 4.3979 -8.7400 2.5626 14 6 2.6662 -8.3500 3.8016 15 7 3.3911 -8.6856 5.0298 16 6 2.7018 -9.0773 6.1462 17 1 1.6238 -9.1385 6.1216 18 6 3.3886 -9.3948 7.3100 19 7 4.7023 -9.3197 7.3403 20 14 2.4482 -9.9285 8.8333 21 1 2.2849 -11.4044 8.8224 22 1 3.2013 -9.5229 10.0473 23 1 1.1112 -9.2826 8.8413 24 6 2.9255 -7.6403 1.3910 25 1 1.8832 -7.3849 1.5815 26 6 3.0238 -8.8247 0.4275 27 6 3.6937 -6.4155 0.8432 28 6 1.9680 -3.2987 1.1692 29 6 1.4603 -2.4476 0.0017 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3634 -0.5139 -0.8900 33 1 4.0266 -0.1672 0.1187 34 1 4.0134 -1.6012 -0.9378 35 1 5.2177 -2.1475 1.1244 36 1 3.8488 -1.5796 2.1113 37 1 3.7540 -3.8919 0.1204 38 1 5.4482 -6.7811 3.1131 39 1 4.0206 -6.2933 4.0697 40 1 1.9869 -7.5201 3.9959 41 1 2.0952 -9.2167 3.4683 42 1 4.3592 -8.6303 5.0520 43 1 5.1822 -9.5419 8.1534 44 1 2.5725 -9.7046 0.8860 45 1 2.4974 -8.5858 -0.4967 46 1 4.0717 -9.0273 0.2064 47 1 3.0608 -5.8340 0.1730 48 1 4.6051 -6.7314 0.3357 49 1 1.7041 -2.8179 2.1112 50 1 1.5111 -4.2872 1.1247 51 1 0.3921 -2.2656 0.1197 52 1 1.6424 -2.9702 -0.9374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106965982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:58 Heat of formation + Delta-G solvation = -67.618088 kcal Electronic energy + Delta-G solvation = -30231.055254 eV Core-core repulsion = 26230.190996 eV Total energy + Delta-G solvation = -4000.864258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.82002 -39.92693 -38.29563 -37.07319 -34.66765 -33.47234 -32.82666 -31.87244 -31.42499 -29.82727 -29.12274 -26.77606 -26.23509 -25.01758 -23.64800 -23.27968 -21.77680 -21.13989 -19.94983 -19.48999 -18.97631 -17.54331 -17.24335 -16.84640 -16.27382 -16.07113 -15.82860 -15.30401 -14.89120 -14.59800 -14.45201 -14.22476 -13.96329 -13.65486 -13.63549 -13.46133 -13.33432 -13.00122 -12.93158 -12.75440 -12.68122 -12.53454 -12.47469 -12.12403 -11.92660 -11.77862 -11.61931 -11.47896 -11.17406 -11.05675 -11.02052 -10.87513 -10.62171 -10.52673 -10.34642 -10.13956 -10.00280 -9.71670 -9.66317 -9.03445 -8.88761 -8.58670 -6.93523 -5.76567 -3.05739 2.29095 2.60100 2.65137 2.97368 3.43701 3.48765 3.50838 4.12947 4.24682 4.32657 4.45848 4.47832 4.57999 4.62607 4.76543 4.79176 4.84173 4.87439 4.94322 4.97601 5.05096 5.10727 5.26277 5.28032 5.31664 5.35405 5.42627 5.44654 5.47692 5.49398 5.57452 5.64663 5.67709 5.72898 5.76608 5.95043 6.01210 6.04594 6.12541 6.14066 6.16282 6.26124 6.40296 6.44263 6.69112 6.83355 7.01913 7.61386 7.69264 7.82537 8.21809 8.41909 9.53185 10.09830 10.44181 11.46227 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.002444 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.394581 B =11453.012546 C =12138.706525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.614 5.614 5 C 0.112 3.888 6 C -0.117 4.117 7 C -0.100 4.100 8 C 0.532 3.468 9 O -0.534 6.534 10 N -0.619 5.619 11 C 0.111 3.889 12 C -0.103 4.103 13 H 0.086 0.914 14 C 0.164 3.836 15 N -0.732 5.732 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.100 4.100 25 H 0.083 0.917 26 C -0.140 4.140 27 C 0.103 3.897 28 C -0.126 4.126 29 C 0.110 3.890 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.018 0.982 41 H 0.021 0.979 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.700 11.109 -23.504 26.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.302 3.698 3 O -0.426 6.426 4 N -0.349 5.349 5 C -0.010 4.010 6 C -0.156 4.156 7 C -0.122 4.122 8 C 0.320 3.680 9 O -0.410 6.410 10 N -0.353 5.353 11 C -0.011 4.011 12 C -0.122 4.122 13 H 0.104 0.896 14 C 0.036 3.964 15 N -0.377 5.377 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C -0.120 4.120 25 H 0.102 0.898 26 C -0.197 4.197 27 C -0.020 4.020 28 C -0.164 4.164 29 C -0.013 4.013 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.036 0.964 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.103 0.897 51 H 0.110 0.890 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.300 12.034 -22.799 26.538 hybrid contribution -0.109 -0.657 0.966 1.173 sum -6.409 11.377 -21.833 25.440 Atomic orbital electron populations 1.21957 0.91741 1.05532 1.04213 1.20836 0.90696 0.82966 0.75281 1.90718 1.70804 1.31054 1.49981 1.48186 1.07074 1.06069 1.73566 1.21624 0.79255 1.02119 0.98051 1.21785 1.00777 0.93298 0.99719 1.21252 0.96730 0.96132 0.98055 1.20152 0.78191 0.80719 0.88927 1.90748 1.47617 1.72459 1.30165 1.48870 1.67796 1.04841 1.13791 1.22170 0.99192 0.86994 0.92734 1.22391 0.98517 0.96516 0.94777 0.89575 1.20685 0.92865 0.96715 0.86143 1.42366 1.06198 1.81355 1.07761 1.19193 0.91135 1.37344 0.89509 0.91252 1.24744 0.95563 1.02483 0.98105 1.69654 1.05471 1.55108 1.27834 0.86194 0.78737 0.78268 0.83010 1.21723 1.21745 1.20776 1.22220 0.99979 0.94592 0.95164 0.89822 1.21729 1.02016 0.97679 0.98313 1.22590 0.99366 0.92426 0.87650 1.21872 0.93529 1.01173 0.99860 1.21770 0.97064 0.83811 0.98621 0.89188 0.88989 0.89357 0.88588 0.91342 0.90166 0.90066 0.89066 0.91874 0.89240 0.96400 0.96081 0.78246 0.93472 0.91734 0.92695 0.92427 0.90485 0.90906 0.90359 0.89750 0.88987 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.97 8.67 36.00 0.31 -0.66 16 2 C 0.51 4.96 7.81 -10.99 -0.09 4.87 16 3 O -0.55 -7.70 16.50 5.55 0.09 -7.61 16 4 N -0.61 -4.98 2.97 -172.80 -0.51 -5.49 16 5 C 0.11 0.95 6.43 -3.71 -0.02 0.92 16 6 C -0.12 -1.15 4.88 -26.61 -0.13 -1.28 16 7 C -0.10 -0.92 1.85 -91.73 -0.17 -1.09 16 8 C 0.53 7.45 6.98 -10.99 -0.08 7.38 16 9 O -0.53 -10.12 16.53 5.55 0.09 -10.02 16 10 N -0.62 -8.15 3.29 -169.98 -0.56 -8.71 16 11 C 0.11 1.80 6.30 -2.98 -0.02 1.78 16 12 C -0.10 -1.51 2.64 -89.24 -0.24 -1.75 16 13 H 0.09 1.28 7.85 -51.93 -0.41 0.88 16 14 C 0.16 3.14 5.35 -4.04 -0.02 3.12 16 15 N -0.73 -18.29 5.33 -59.90 -0.32 -18.61 16 16 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 17 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 20 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.10 -1.04 3.19 -88.93 -0.28 -1.32 16 25 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 26 C -0.14 -1.20 9.17 37.16 0.34 -0.85 16 27 C 0.10 0.94 6.21 -2.31 -0.01 0.92 16 28 C -0.13 -0.95 5.34 -26.64 -0.14 -1.09 16 29 C 0.11 0.59 6.34 -3.74 -0.02 0.56 16 30 H 0.09 0.39 7.69 -51.93 -0.40 -0.01 16 31 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.09 0.29 7.94 -51.93 -0.41 -0.12 16 33 H 0.10 0.97 7.00 -51.93 -0.36 0.60 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.00 7.91 -51.93 -0.41 0.59 16 37 H 0.09 0.63 6.99 -51.93 -0.36 0.27 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.82 7.53 -51.93 -0.39 1.43 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.38 10.09 7.51 -40.82 -0.31 9.79 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 46 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 47 H 0.08 0.49 6.85 -51.93 -0.36 0.14 16 48 H 0.07 0.60 8.02 -51.93 -0.42 0.19 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 51 H 0.09 0.32 5.93 -51.93 -0.31 0.01 16 52 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 408.04 15.07 6.15 6.15 Total: -1.00 -36.56 408.04 -9.34 -45.90 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -9.16 Total: 4.35 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.82 Total: 4.16 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.67 Total: -60.48 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.18 Total: -17.64 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.56 -9.34 -45.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106965982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.722 kcal (2) G-P(sol) polarization free energy of solvation -36.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds