Wall clock time and date at job start Tue Mar 31 2020 19:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21287 * 119.99846 * 2 1 4 4 N 1.34773 * 120.00049 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.62899 * 180.02562 * 4 2 1 6 6 C 1.53188 * 108.77648 * 126.37301 * 5 4 2 7 7 C 1.53041 * 109.31567 * 54.63298 * 6 5 4 8 8 C 1.50694 * 109.46366 * 178.61311 * 7 6 5 9 9 O 1.21287 * 119.99734 * 26.43197 * 8 7 6 10 10 N 1.34775 * 120.00241 * 206.42446 * 8 7 6 11 11 C 1.47482 * 127.03389 * 185.29955 * 10 8 7 12 12 C 1.54005 * 107.08570 * 154.51985 * 11 10 8 13 13 H 1.08995 * 110.32881 * 120.19800 * 12 11 10 14 14 C 1.53002 * 110.32638 * 242.31445 * 12 11 10 15 15 N 1.46510 * 109.46867 * 293.54246 * 14 12 11 16 16 C 1.36934 * 119.99886 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00062 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99775 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00354 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99721 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47173 * 90.00303 * 20 18 16 22 22 H 1.48506 * 109.46830 * 209.99532 * 20 18 16 23 23 H 1.48490 * 109.47368 * 330.00076 * 20 18 16 24 24 C 1.54620 * 105.04494 * 1.30226 * 12 11 10 25 25 H 1.08996 * 110.74245 * 263.51764 * 24 12 11 26 26 C 1.52997 * 110.73816 * 140.36499 * 24 12 11 27 27 C 1.48114 * 127.03126 * 4.98485 * 10 8 7 28 28 C 1.53042 * 109.53727 * 298.64021 * 7 6 5 29 29 C 1.46924 * 120.63178 * 359.97438 * 4 2 1 30 30 H 1.09003 * 109.47491 * 240.00368 * 1 2 3 31 31 H 1.08998 * 109.47357 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.47212 * 120.00312 * 1 2 3 33 33 H 1.08999 * 109.58756 * 6.58041 * 5 4 2 34 34 H 1.09006 * 109.70369 * 246.22902 * 5 4 2 35 35 H 1.08996 * 109.49758 * 174.58488 * 6 5 4 36 36 H 1.08999 * 109.49857 * 294.68204 * 6 5 4 37 37 H 1.09004 * 109.46023 * 58.65237 * 7 6 5 38 38 H 1.08998 * 109.91745 * 273.87730 * 11 10 8 39 39 H 1.09000 * 109.91500 * 35.16065 * 11 10 8 40 40 H 1.08995 * 109.47318 * 53.54122 * 14 12 11 41 41 H 1.09003 * 109.47092 * 173.54367 * 14 12 11 42 42 H 0.96995 * 119.99910 * 0.02562 * 15 14 12 43 43 H 0.96995 * 119.99971 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.47149 * 60.00818 * 26 24 12 45 45 H 1.09008 * 109.46844 * 180.02562 * 26 24 12 46 46 H 1.08993 * 109.47460 * 300.00580 * 26 24 12 47 47 H 1.08997 * 110.66603 * 337.76479 * 27 10 8 48 48 H 1.08999 * 110.66553 * 100.88918 * 27 10 8 49 49 H 1.09002 * 109.49251 * 301.41084 * 28 7 6 50 50 H 1.08999 * 109.52721 * 181.33712 * 28 7 6 51 51 H 1.09005 * 109.58663 * 353.41885 * 29 4 2 52 52 H 1.09003 * 109.58642 * 113.83676 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6500 -1.1833 0.0011 6 6 4.1332 -2.0485 1.1693 7 6 3.4895 -3.4336 1.0734 8 6 3.9888 -4.2986 2.2019 9 8 4.3656 -3.7886 3.2358 10 7 4.0166 -5.6388 2.0623 11 6 4.3686 -6.6322 3.0940 12 6 3.6644 -7.9481 2.7139 13 1 4.3979 -8.7400 2.5626 14 6 2.6662 -8.3500 3.8016 15 7 3.3911 -8.6856 5.0298 16 6 2.7018 -9.0773 6.1462 17 1 1.6238 -9.1385 6.1216 18 6 3.3886 -9.3948 7.3100 19 7 4.7023 -9.3197 7.3403 20 14 2.4482 -9.9285 8.8333 21 1 2.2849 -11.4044 8.8224 22 1 3.2013 -9.5229 10.0473 23 1 1.1112 -9.2826 8.8413 24 6 2.9255 -7.6403 1.3910 25 1 1.8832 -7.3849 1.5815 26 6 3.0238 -8.8247 0.4275 27 6 3.6937 -6.4155 0.8432 28 6 1.9680 -3.2987 1.1692 29 6 1.4603 -2.4476 0.0017 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3634 -0.5139 -0.8900 33 1 4.0266 -0.1672 0.1187 34 1 4.0134 -1.6012 -0.9378 35 1 5.2177 -2.1475 1.1244 36 1 3.8488 -1.5796 2.1113 37 1 3.7540 -3.8919 0.1204 38 1 5.4482 -6.7811 3.1131 39 1 4.0206 -6.2933 4.0697 40 1 1.9869 -7.5201 3.9959 41 1 2.0952 -9.2167 3.4683 42 1 4.3592 -8.6303 5.0520 43 1 5.1822 -9.5419 8.1534 44 1 2.5725 -9.7046 0.8860 45 1 2.4974 -8.5858 -0.4967 46 1 4.0717 -9.0273 0.2064 47 1 3.0608 -5.8340 0.1730 48 1 4.6051 -6.7314 0.3357 49 1 1.7041 -2.8179 2.1112 50 1 1.5111 -4.2872 1.1247 51 1 0.3921 -2.2656 0.1197 52 1 1.6424 -2.9702 -0.9374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106965982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:57 Heat of formation + Delta-G solvation = -93.419644 kcal Electronic energy + Delta-G solvation = -30232.174094 eV Core-core repulsion = 26230.190996 eV Total energy + Delta-G solvation = -4001.983098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69339 -40.82152 -39.35985 -37.97686 -36.45935 -34.43663 -33.92531 -33.06810 -32.49932 -30.70704 -30.28286 -27.85000 -27.15438 -26.26792 -24.96662 -24.26543 -22.80808 -22.18281 -20.98487 -20.42714 -19.79719 -19.19211 -18.24394 -17.94631 -17.23943 -16.85496 -16.69185 -16.48226 -16.35154 -15.81617 -15.42195 -15.22498 -15.15184 -14.96322 -14.85961 -14.34019 -14.15844 -14.00821 -13.97343 -13.61310 -13.53035 -13.33392 -13.15879 -13.05455 -13.02599 -12.92485 -12.77467 -12.72676 -12.50022 -12.24891 -12.17139 -11.96148 -11.93215 -11.75952 -11.68690 -11.46008 -11.33835 -10.98376 -10.93581 -10.75827 -9.73055 -9.70063 -9.02974 -7.98068 -5.27019 1.43958 1.46432 1.54466 1.54668 1.61215 1.91543 2.07516 2.53269 3.34102 3.36778 3.54306 3.57181 3.69438 3.74919 3.79866 3.82572 4.02544 4.16182 4.22173 4.26736 4.29010 4.36829 4.47929 4.49608 4.56698 4.59231 4.61635 4.63664 4.69359 4.72021 4.75484 4.80051 4.80496 4.87856 4.94019 4.96336 5.03251 5.08862 5.13022 5.16442 5.24063 5.27423 5.30925 5.42297 5.46176 5.52556 5.61153 6.24229 6.41195 6.57997 7.12827 7.15713 7.30268 8.06663 8.28462 9.25621 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.002444 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.394581 B =11453.012546 C =12138.706525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.502 3.498 3 O -0.605 6.605 4 N -0.614 5.614 5 C 0.117 3.883 6 C -0.112 4.112 7 C -0.087 4.087 8 C 0.523 3.477 9 O -0.599 6.599 10 N -0.617 5.617 11 C 0.115 3.885 12 C -0.093 4.093 13 H 0.085 0.915 14 C 0.164 3.836 15 N -0.747 5.747 16 C -0.245 4.245 17 H 0.076 0.924 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.282 1.282 22 H -0.298 1.298 23 H -0.270 1.270 24 C -0.089 4.089 25 H 0.088 0.912 26 C -0.135 4.135 27 C 0.103 3.897 28 C -0.123 4.123 29 C 0.112 3.888 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.134 0.866 38 H 0.053 0.947 39 H 0.036 0.964 40 H 0.009 0.991 41 H 0.031 0.969 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.050 0.950 45 H 0.087 0.913 46 H 0.061 0.939 47 H 0.122 0.878 48 H 0.092 0.908 49 H 0.047 0.953 50 H 0.105 0.895 51 H 0.118 0.882 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 9.914 -27.443 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.293 3.707 3 O -0.487 6.487 4 N -0.347 5.347 5 C -0.006 4.006 6 C -0.151 4.151 7 C -0.108 4.108 8 C 0.314 3.686 9 O -0.480 6.480 10 N -0.349 5.349 11 C -0.009 4.009 12 C -0.112 4.112 13 H 0.103 0.897 14 C 0.038 3.962 15 N -0.389 5.389 16 C -0.377 4.377 17 H 0.094 0.906 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.802 3.198 21 H -0.209 1.209 22 H -0.224 1.224 23 H -0.195 1.195 24 C -0.109 4.109 25 H 0.107 0.893 26 C -0.193 4.193 27 C -0.018 4.018 28 C -0.162 4.162 29 C -0.010 4.010 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.139 0.861 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.151 0.849 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.026 0.974 41 H 0.049 0.951 42 H 0.204 0.796 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.140 0.860 48 H 0.110 0.890 49 H 0.066 0.934 50 H 0.123 0.877 51 H 0.136 0.864 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.909 10.784 -26.811 30.241 hybrid contribution 0.694 -0.298 2.207 2.332 sum -8.216 10.486 -24.604 27.979 Atomic orbital electron populations 1.21980 0.88371 1.05967 1.06384 1.21654 0.92412 0.82490 0.74176 1.90692 1.72179 1.33124 1.52736 1.48350 1.06938 1.06989 1.72420 1.21540 0.80006 1.00558 0.98483 1.21691 1.00748 0.94060 0.98623 1.21303 0.97758 0.94371 0.97400 1.21179 0.77002 0.81091 0.89354 1.90720 1.50456 1.73705 1.33109 1.48985 1.66960 1.04504 1.14464 1.21872 0.98617 0.88713 0.91670 1.22274 0.97818 0.95268 0.95885 0.89650 1.20838 0.93569 0.96409 0.85410 1.42615 1.05926 1.81236 1.09141 1.19626 0.91638 1.35876 0.90551 0.90643 1.25601 0.96473 1.03610 1.01299 1.69820 1.07065 1.56950 1.28294 0.85137 0.77718 0.78061 0.78850 1.20878 1.22438 1.19489 1.22224 0.99688 0.96192 0.92749 0.89333 1.21711 1.02768 0.95972 0.98805 1.22938 1.00947 0.91643 0.86274 1.21906 0.92038 1.02548 0.99718 1.22059 0.98012 0.81976 0.98908 0.87664 0.89645 0.86134 0.91051 0.88192 0.90591 0.93958 0.84867 0.92896 0.94515 0.97353 0.95080 0.79571 0.94032 0.93053 0.89464 0.91975 0.85954 0.89007 0.93443 0.87712 0.86442 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 8.67 71.24 0.62 -0.79 16 2 C 0.50 9.10 7.81 87.66 0.68 9.78 16 3 O -0.61 -17.48 16.50 -3.05 -0.05 -17.53 16 4 N -0.61 -8.50 2.97 -819.00 -2.43 -10.93 16 5 C 0.12 1.83 6.43 86.36 0.56 2.39 16 6 C -0.11 -2.20 4.88 30.67 0.15 -2.05 16 7 C -0.09 -1.40 1.85 -11.51 -0.02 -1.42 16 8 C 0.52 14.62 6.98 87.66 0.61 15.23 16 9 O -0.60 -24.38 16.53 -3.05 -0.05 -24.43 16 10 N -0.62 -15.55 3.29 -810.09 -2.67 -18.22 16 11 C 0.11 3.86 6.30 86.53 0.54 4.41 16 12 C -0.09 -2.69 2.64 -9.90 -0.03 -2.72 16 13 H 0.09 2.51 7.85 -2.39 -0.02 2.49 16 14 C 0.16 6.35 5.35 86.38 0.46 6.81 16 15 N -0.75 -38.49 5.33 -343.43 -1.83 -40.33 16 16 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 19 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 20 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.09 -1.54 3.19 -9.70 -0.03 -1.57 16 25 H 0.09 1.50 7.87 -2.39 -0.02 1.48 16 26 C -0.14 -1.71 9.17 71.98 0.66 -1.05 16 27 C 0.10 1.41 6.21 86.62 0.54 1.95 16 28 C -0.12 -1.48 5.34 30.65 0.16 -1.32 16 29 C 0.11 0.65 6.34 86.34 0.55 1.20 16 30 H 0.10 0.58 7.69 -2.39 -0.02 0.56 16 31 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 32 H 0.12 0.24 7.94 -2.38 -0.02 0.22 16 33 H 0.07 1.50 7.00 -2.39 -0.02 1.48 16 34 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.14 7.91 -2.39 -0.02 1.13 16 37 H 0.13 1.07 6.99 -2.39 -0.02 1.06 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.04 1.61 7.53 -2.39 -0.02 1.59 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.37 20.58 7.51 -92.71 -0.70 19.89 16 43 H 0.25 15.32 8.31 -92.71 -0.77 14.54 16 44 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.06 0.76 8.11 -2.39 -0.02 0.74 16 47 H 0.12 0.67 6.85 -2.39 -0.02 0.65 16 48 H 0.09 1.02 8.02 -2.39 -0.02 1.01 16 49 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 51 H 0.12 0.17 5.93 -2.38 -0.01 0.15 16 52 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -89.04 408.04 2.24 -86.80 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.20 Total: 22.66 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.76 Total: 13.60 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -6.65 Total: -130.30 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.10 Total: -41.96 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -89.04 2.24 -86.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106965982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.616 kcal (2) G-P(sol) polarization free energy of solvation -89.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds