Wall clock time and date at job start Tue Mar 31 2020 19:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.28976 * 2 1 4 4 C 1.54010 * 110.32313 * 237.86414 * 2 1 3 5 5 N 1.47488 * 107.08130 * 242.41397 * 4 2 1 6 6 C 1.34777 * 127.03022 * 154.51983 * 5 4 2 7 7 O 1.21288 * 119.99593 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00369 * 0.02562 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 6 11 11 C 1.53006 * 110.21450 * 300.69765 * 10 9 8 12 12 C 1.54484 * 110.24401 * 178.77263 * 10 9 8 13 13 C 1.54625 * 101.76360 * 215.58045 * 12 10 9 14 14 C 1.51282 * 104.19437 * 24.79999 * 13 12 10 15 15 O 1.21288 * 124.94038 * 163.77757 * 14 13 12 16 16 N 1.34558 * 110.14111 * 343.66933 * 14 13 12 17 17 C 1.48119 * 105.93239 * 334.78015 * 5 4 2 18 18 C 1.54590 * 103.42274 * 39.02723 * 17 5 4 19 19 H 1.09001 * 110.57931 * 81.16485 * 18 17 5 20 20 C 1.53006 * 110.83348 * 204.44510 * 18 17 5 21 21 N 1.46497 * 109.46921 * 288.56271 * 20 18 17 22 22 C 1.36934 * 120.00147 * 180.02562 * 21 20 18 23 23 H 1.08007 * 119.99696 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00212 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99450 * 179.97438 * 24 22 21 26 26 Si 1.86793 * 119.99983 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.47163 * 90.00330 * 26 24 22 28 28 H 1.48503 * 109.47260 * 209.99939 * 26 24 22 29 29 H 1.48496 * 109.47051 * 330.00242 * 26 24 22 30 30 H 1.09002 * 109.47225 * 180.68138 * 1 2 3 31 31 H 1.09006 * 109.47235 * 300.68001 * 1 2 3 32 32 H 1.09003 * 109.47339 * 60.68246 * 1 2 3 33 33 H 1.09003 * 109.91134 * 123.05431 * 4 2 1 34 34 H 1.08993 * 109.91499 * 1.77696 * 4 2 1 35 35 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 36 36 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 37 37 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 38 38 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 39 39 H 1.08999 * 109.46766 * 60.00548 * 11 10 9 40 40 H 1.09005 * 109.46803 * 180.02562 * 11 10 9 41 41 H 1.09001 * 109.47019 * 300.00401 * 11 10 9 42 42 H 1.09004 * 110.96753 * 333.70178 * 12 10 9 43 43 H 1.09000 * 110.97284 * 97.42400 * 12 10 9 44 44 H 1.09004 * 110.48477 * 143.47557 * 13 12 10 45 45 H 1.08996 * 110.48991 * 265.98481 * 13 12 10 46 46 H 0.97002 * 124.43725 * 179.64506 * 16 14 13 47 47 H 1.09003 * 110.65937 * 157.50670 * 17 5 4 48 48 H 1.09001 * 110.66114 * 280.62611 * 17 5 4 49 49 H 1.09006 * 109.46781 * 48.55914 * 20 18 17 50 50 H 1.08993 * 109.47083 * 168.55871 * 20 18 17 51 51 H 0.97005 * 120.00078 * 359.97438 * 21 20 18 52 52 H 0.97007 * 119.99387 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2230 5 7 2.8276 -1.9218 -0.7103 6 6 3.0611 -3.0874 -1.3454 7 8 3.7089 -3.9558 -0.8002 8 6 2.5175 -3.3116 -2.7329 9 6 2.9221 -4.7043 -3.2203 10 6 2.3707 -4.9317 -4.6293 11 6 0.8455 -4.8103 -4.6260 12 6 2.7952 -6.3222 -5.1515 13 6 3.0151 -6.0403 -6.6558 14 6 3.3227 -4.5603 -6.7148 15 8 3.8255 -3.9925 -7.6613 16 7 2.9552 -3.9645 -5.5657 17 6 3.2788 -1.5398 0.6478 18 6 2.0671 -0.7736 1.2263 19 1 1.3174 -1.4700 1.6020 20 6 2.5095 0.1939 2.3259 21 7 2.9004 -0.5655 3.5162 22 6 3.3344 0.0922 4.6360 23 1 3.3890 1.1709 4.6416 24 6 3.7042 -0.6273 5.7641 25 7 4.1219 0.0051 6.8402 26 14 3.6091 -2.4928 5.7547 27 1 4.9002 -3.0519 5.2794 28 1 3.3345 -2.9814 7.1298 29 1 2.5172 -2.9282 4.8473 30 1 -0.3634 -1.0276 0.0122 31 1 -0.3634 0.5244 0.8839 32 1 -0.3634 0.5032 -0.8961 33 1 2.7180 -0.1227 -1.8103 34 1 1.2333 -1.1157 -1.8359 35 1 2.9228 -2.5580 -3.4081 36 1 1.4304 -3.2353 -2.7139 37 1 2.5165 -5.4577 -2.5450 38 1 4.0093 -4.7809 -3.2393 39 1 0.5611 -3.8137 -4.2883 40 1 0.4658 -4.9747 -5.6345 41 1 0.4231 -5.5564 -3.9530 42 1 3.7196 -6.6515 -4.6770 43 1 2.0009 -7.0538 -5.0032 44 1 3.8573 -6.6203 -7.0335 45 1 2.1122 -6.2673 -7.2225 46 1 3.0632 -3.0187 -5.3791 47 1 3.4934 -2.4259 1.2452 48 1 4.1522 -0.8899 0.5942 49 1 3.3584 0.7802 1.9740 50 1 1.6852 0.8618 2.5755 51 1 2.8510 -1.5343 3.5113 52 1 4.3800 -0.4978 7.6286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107103085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:27 Heat of formation + Delta-G solvation = -70.184901 kcal Electronic energy + Delta-G solvation = -29725.721037 eV Core-core repulsion = 25724.745473 eV Total energy + Delta-G solvation = -4000.975564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16608 -40.19657 -38.29370 -37.49390 -34.88793 -33.52353 -32.89691 -31.83377 -31.59140 -30.16949 -29.30217 -26.94306 -26.42162 -25.53583 -23.69634 -22.73641 -21.29011 -21.18280 -20.53745 -20.13297 -19.19080 -17.80461 -17.48933 -16.84565 -16.61766 -16.24253 -15.73427 -15.44686 -15.00346 -14.57376 -14.52496 -14.32712 -14.13188 -13.88021 -13.76636 -13.50905 -13.35540 -13.19154 -13.05185 -12.84164 -12.75451 -12.65706 -12.48347 -12.23645 -12.18930 -11.93993 -11.56407 -11.53171 -11.45432 -11.35419 -11.14215 -10.96110 -10.68455 -10.57546 -10.43600 -10.25799 -10.13670 -9.90937 -9.60395 -9.57984 -8.92436 -8.75421 -7.26174 -5.78522 -3.14541 2.21082 2.50360 2.81307 2.90225 3.37984 3.41721 3.46180 3.77656 3.91362 4.09686 4.27975 4.41949 4.43364 4.51878 4.58487 4.59987 4.72023 4.75511 4.75842 4.94769 4.98952 5.07673 5.14555 5.21279 5.27900 5.30859 5.34383 5.35665 5.37783 5.43762 5.51230 5.52781 5.60239 5.64364 5.65690 5.68203 5.81190 5.87644 5.94427 6.01088 6.05114 6.13169 6.32358 6.39629 6.57416 6.61260 6.67824 7.46072 7.85274 7.96455 8.04521 8.40245 9.18780 9.91372 10.10348 11.39688 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.002237 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.473083 B =12511.747578 C =13307.417189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.105 3.895 5 N -0.622 5.622 6 C 0.528 3.472 7 O -0.540 6.540 8 C -0.138 4.138 9 C -0.106 4.106 10 C 0.155 3.845 11 C -0.160 4.160 12 C -0.124 4.124 13 C -0.156 4.156 14 C 0.520 3.480 15 O -0.538 6.538 16 N -0.722 5.722 17 C 0.111 3.889 18 C -0.107 4.107 19 H 0.082 0.918 20 C 0.169 3.831 21 N -0.756 5.756 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.933 5.933 26 Si 0.883 3.117 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.408 0.592 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.030 0.970 50 H 0.032 0.968 51 H 0.361 0.639 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 -9.470 -27.700 30.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.108 0.892 4 C -0.019 4.019 5 N -0.356 5.356 6 C 0.317 3.683 7 O -0.417 6.417 8 C -0.178 4.178 9 C -0.144 4.144 10 C 0.068 3.932 11 C -0.219 4.219 12 C -0.162 4.162 13 C -0.197 4.197 14 C 0.306 3.694 15 O -0.414 6.414 16 N -0.378 5.378 17 C -0.011 4.011 18 C -0.126 4.126 19 H 0.101 0.899 20 C 0.042 3.958 21 N -0.402 5.402 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.581 5.581 26 Si 0.714 3.286 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.247 0.753 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.048 0.952 50 H 0.050 0.950 51 H 0.194 0.806 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.914 -9.668 -27.842 30.791 hybrid contribution -0.062 -0.722 0.362 0.810 sum -8.976 -10.391 -27.480 30.720 Atomic orbital electron populations 1.21841 0.94047 1.01897 1.02128 1.22083 0.96432 0.99898 0.93541 0.89157 1.22240 0.95317 0.87466 0.96853 1.48905 1.53676 1.14801 1.18213 1.20221 0.80208 0.80342 0.87539 1.90739 1.40471 1.42524 1.68004 1.21717 1.02787 0.99336 0.93989 1.21697 1.02577 0.96356 0.93805 1.21109 0.93638 0.88923 0.89489 1.22264 0.93641 1.03151 1.02807 1.22712 1.03586 0.95609 0.94246 1.22355 1.04829 0.94300 0.98172 1.20938 0.76432 0.90212 0.81787 1.90771 1.43946 1.71210 1.35517 1.46482 1.62919 1.11529 1.16916 1.22534 0.97078 0.99908 0.81597 1.22573 0.97081 0.97945 0.95025 0.89919 1.20607 0.97212 0.92573 0.85444 1.42726 1.80885 1.04539 1.12047 1.19032 1.35917 0.93167 0.89408 0.89191 1.24674 1.01129 0.97318 0.95949 1.69706 1.50429 1.34366 1.03597 0.86569 0.77994 0.87272 0.76815 1.20939 1.21689 1.20375 0.92726 0.91707 0.92632 0.91411 0.90901 0.89406 0.88485 0.89247 0.90124 0.91650 0.91957 0.90738 0.89425 0.88819 0.87989 0.87801 0.75294 0.89805 0.90436 0.95201 0.95047 0.80639 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.89 37.16 0.33 -0.89 16 2 C -0.10 -0.99 3.17 -89.24 -0.28 -1.27 16 3 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 4 C 0.10 0.90 6.42 -2.97 -0.02 0.88 16 5 N -0.62 -7.38 3.29 -169.98 -0.56 -7.94 16 6 C 0.53 6.43 7.89 -10.99 -0.09 6.35 16 7 O -0.54 -8.91 16.19 5.55 0.09 -8.82 16 8 C -0.14 -0.99 4.28 -27.89 -0.12 -1.10 16 9 C -0.11 -0.72 3.70 -26.73 -0.10 -0.82 16 10 C 0.16 0.77 0.87 -130.90 -0.11 0.66 16 11 C -0.16 -0.61 8.41 37.16 0.31 -0.30 16 12 C -0.12 -0.51 6.21 -25.10 -0.16 -0.66 16 13 C -0.16 -0.82 6.86 -26.74 -0.18 -1.00 16 14 C 0.52 4.59 8.43 -10.80 -0.09 4.50 16 15 O -0.54 -7.23 18.03 5.55 0.10 -7.13 16 16 N -0.72 -4.71 5.40 -46.58 -0.25 -4.96 16 17 C 0.11 1.62 6.44 -2.32 -0.01 1.60 16 18 C -0.11 -1.48 2.61 -88.93 -0.23 -1.71 16 19 H 0.08 1.23 7.86 -51.93 -0.41 0.82 16 20 C 0.17 3.03 5.58 -4.04 -0.02 3.00 16 21 N -0.76 -17.55 5.32 -59.91 -0.32 -17.87 16 22 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 23 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 24 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 25 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 26 Si 0.88 22.37 27.73 -169.99 -4.71 17.65 16 27 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.28 -6.63 6.52 56.52 0.37 -6.27 16 30 H 0.05 0.48 8.13 -51.93 -0.42 0.05 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.46 7.08 -51.93 -0.37 0.10 16 35 H 0.09 0.50 6.89 -51.93 -0.36 0.14 16 36 H 0.10 0.52 6.25 -51.93 -0.32 0.19 16 37 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.06 0.24 6.49 -51.93 -0.34 -0.10 16 40 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.09 0.38 7.91 -51.93 -0.41 -0.03 16 43 H 0.09 0.23 7.89 -51.93 -0.41 -0.18 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.41 2.44 7.69 -40.82 -0.31 2.12 16 47 H 0.08 1.44 7.85 -51.93 -0.41 1.03 16 48 H 0.08 1.15 7.93 -51.93 -0.41 0.74 16 49 H 0.03 0.54 7.99 -51.93 -0.41 0.13 16 50 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.36 8.32 5.53 -40.82 -0.23 8.10 16 52 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 407.47 15.07 6.14 6.14 Total: -1.00 -36.70 407.47 -8.81 -45.50 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -9.03 Total: 3.74 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.03 Total: 2.24 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.36 Total: -59.32 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.19 Total: -15.95 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.70 -8.81 -45.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107103085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.682 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds