Wall clock time and date at job start Tue Mar 31 2020 19:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.28976 * 2 1 4 4 C 1.54010 * 110.32313 * 237.86414 * 2 1 3 5 5 N 1.47488 * 107.08130 * 242.41397 * 4 2 1 6 6 C 1.34777 * 127.03022 * 154.51983 * 5 4 2 7 7 O 1.21288 * 119.99593 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00369 * 0.02562 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 6 11 11 C 1.53006 * 110.21450 * 300.69765 * 10 9 8 12 12 C 1.54484 * 110.24401 * 178.77263 * 10 9 8 13 13 C 1.54625 * 101.76360 * 215.58045 * 12 10 9 14 14 C 1.51282 * 104.19437 * 24.79999 * 13 12 10 15 15 O 1.21288 * 124.94038 * 163.77757 * 14 13 12 16 16 N 1.34558 * 110.14111 * 343.66933 * 14 13 12 17 17 C 1.48119 * 105.93239 * 334.78015 * 5 4 2 18 18 C 1.54590 * 103.42274 * 39.02723 * 17 5 4 19 19 H 1.09001 * 110.57931 * 81.16485 * 18 17 5 20 20 C 1.53006 * 110.83348 * 204.44510 * 18 17 5 21 21 N 1.46497 * 109.46921 * 288.56271 * 20 18 17 22 22 C 1.36934 * 120.00147 * 180.02562 * 21 20 18 23 23 H 1.08007 * 119.99696 * 359.97438 * 22 21 20 24 24 C 1.38815 * 120.00212 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99450 * 179.97438 * 24 22 21 26 26 Si 1.86793 * 119.99983 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.47163 * 90.00330 * 26 24 22 28 28 H 1.48503 * 109.47260 * 209.99939 * 26 24 22 29 29 H 1.48496 * 109.47051 * 330.00242 * 26 24 22 30 30 H 1.09002 * 109.47225 * 180.68138 * 1 2 3 31 31 H 1.09006 * 109.47235 * 300.68001 * 1 2 3 32 32 H 1.09003 * 109.47339 * 60.68246 * 1 2 3 33 33 H 1.09003 * 109.91134 * 123.05431 * 4 2 1 34 34 H 1.08993 * 109.91499 * 1.77696 * 4 2 1 35 35 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 36 36 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 37 37 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 38 38 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 39 39 H 1.08999 * 109.46766 * 60.00548 * 11 10 9 40 40 H 1.09005 * 109.46803 * 180.02562 * 11 10 9 41 41 H 1.09001 * 109.47019 * 300.00401 * 11 10 9 42 42 H 1.09004 * 110.96753 * 333.70178 * 12 10 9 43 43 H 1.09000 * 110.97284 * 97.42400 * 12 10 9 44 44 H 1.09004 * 110.48477 * 143.47557 * 13 12 10 45 45 H 1.08996 * 110.48991 * 265.98481 * 13 12 10 46 46 H 0.97002 * 124.43725 * 179.64506 * 16 14 13 47 47 H 1.09003 * 110.65937 * 157.50670 * 17 5 4 48 48 H 1.09001 * 110.66114 * 280.62611 * 17 5 4 49 49 H 1.09006 * 109.46781 * 48.55914 * 20 18 17 50 50 H 1.08993 * 109.47083 * 168.55871 * 20 18 17 51 51 H 0.97005 * 120.00078 * 359.97438 * 21 20 18 52 52 H 0.97007 * 119.99387 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2230 5 7 2.8276 -1.9218 -0.7103 6 6 3.0611 -3.0874 -1.3454 7 8 3.7089 -3.9558 -0.8002 8 6 2.5175 -3.3116 -2.7329 9 6 2.9221 -4.7043 -3.2203 10 6 2.3707 -4.9317 -4.6293 11 6 0.8455 -4.8103 -4.6260 12 6 2.7952 -6.3222 -5.1515 13 6 3.0151 -6.0403 -6.6558 14 6 3.3227 -4.5603 -6.7148 15 8 3.8255 -3.9925 -7.6613 16 7 2.9552 -3.9645 -5.5657 17 6 3.2788 -1.5398 0.6478 18 6 2.0671 -0.7736 1.2263 19 1 1.3174 -1.4700 1.6020 20 6 2.5095 0.1939 2.3259 21 7 2.9004 -0.5655 3.5162 22 6 3.3344 0.0922 4.6360 23 1 3.3890 1.1709 4.6416 24 6 3.7042 -0.6273 5.7641 25 7 4.1219 0.0051 6.8402 26 14 3.6091 -2.4928 5.7547 27 1 4.9002 -3.0519 5.2794 28 1 3.3345 -2.9814 7.1298 29 1 2.5172 -2.9282 4.8473 30 1 -0.3634 -1.0276 0.0122 31 1 -0.3634 0.5244 0.8839 32 1 -0.3634 0.5032 -0.8961 33 1 2.7180 -0.1227 -1.8103 34 1 1.2333 -1.1157 -1.8359 35 1 2.9228 -2.5580 -3.4081 36 1 1.4304 -3.2353 -2.7139 37 1 2.5165 -5.4577 -2.5450 38 1 4.0093 -4.7809 -3.2393 39 1 0.5611 -3.8137 -4.2883 40 1 0.4658 -4.9747 -5.6345 41 1 0.4231 -5.5564 -3.9530 42 1 3.7196 -6.6515 -4.6770 43 1 2.0009 -7.0538 -5.0032 44 1 3.8573 -6.6203 -7.0335 45 1 2.1122 -6.2673 -7.2225 46 1 3.0632 -3.0187 -5.3791 47 1 3.4934 -2.4259 1.2452 48 1 4.1522 -0.8899 0.5942 49 1 3.3584 0.7802 1.9740 50 1 1.6852 0.8618 2.5755 51 1 2.8510 -1.5343 3.5113 52 1 4.3800 -0.4978 7.6286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107103085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:26 Heat of formation + Delta-G solvation = -96.955977 kcal Electronic energy + Delta-G solvation = -29726.881918 eV Core-core repulsion = 25724.745473 eV Total energy + Delta-G solvation = -4002.136445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.74403 -41.10917 -39.27345 -38.23826 -36.61565 -34.35692 -33.94806 -33.27342 -32.28989 -31.23588 -30.14335 -27.77087 -27.24002 -26.50677 -24.84232 -23.88174 -22.52981 -21.80124 -21.21535 -21.05389 -20.13396 -19.51174 -18.40437 -17.63232 -17.34310 -17.02312 -16.66620 -16.51239 -16.17904 -15.81706 -15.47052 -15.27563 -15.08503 -14.89958 -14.72668 -14.52256 -14.34586 -14.06249 -13.83817 -13.63727 -13.61574 -13.48733 -13.31668 -13.18659 -13.07128 -12.95597 -12.82652 -12.52622 -12.48718 -12.11807 -12.02218 -11.89031 -11.82319 -11.73755 -11.59754 -11.54544 -11.48570 -11.02080 -10.94423 -10.88633 -10.14073 -9.72394 -9.32085 -8.05842 -5.38492 1.33954 1.37009 1.42994 1.57398 1.59883 1.93158 2.39696 2.44232 3.25572 3.27801 3.34137 3.48776 3.57597 3.65737 3.78555 3.82364 3.95718 4.01268 4.13303 4.24075 4.25603 4.30030 4.33825 4.46354 4.50868 4.56285 4.57590 4.71239 4.77267 4.78837 4.83798 4.87663 4.93185 4.95992 4.98103 5.04431 5.06592 5.13562 5.15254 5.20129 5.22354 5.24302 5.37314 5.44111 5.53965 5.73562 5.89721 6.05239 6.18573 6.57015 7.04868 7.12261 7.25341 7.81823 7.98605 9.15594 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.002237 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.473083 B =12511.747578 C =13307.417189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 H 0.097 0.903 4 C 0.104 3.896 5 N -0.622 5.622 6 C 0.520 3.480 7 O -0.593 6.593 8 C -0.128 4.128 9 C -0.101 4.101 10 C 0.161 3.839 11 C -0.159 4.159 12 C -0.121 4.121 13 C -0.151 4.151 14 C 0.510 3.490 15 O -0.594 6.594 16 N -0.715 5.715 17 C 0.109 3.891 18 C -0.096 4.096 19 H 0.075 0.925 20 C 0.166 3.834 21 N -0.761 5.761 22 C -0.231 4.231 23 H 0.062 0.938 24 C -0.062 4.062 25 N -0.981 5.981 26 Si 0.949 3.051 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.256 1.256 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.123 0.877 46 H 0.410 0.590 47 H 0.050 0.950 48 H 0.069 0.931 49 H 0.030 0.970 50 H 0.035 0.965 51 H 0.363 0.637 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 -10.540 -30.427 34.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.116 0.884 4 C -0.017 4.017 5 N -0.354 5.354 6 C 0.311 3.689 7 O -0.474 6.474 8 C -0.167 4.167 9 C -0.140 4.140 10 C 0.075 3.925 11 C -0.217 4.217 12 C -0.158 4.158 13 C -0.190 4.190 14 C 0.298 3.702 15 O -0.475 6.475 16 N -0.369 5.369 17 C -0.014 4.014 18 C -0.116 4.116 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.406 5.406 22 C -0.362 4.362 23 H 0.080 0.920 24 C -0.254 4.254 25 N -0.632 5.632 26 Si 0.777 3.223 27 H -0.210 1.210 28 H -0.219 1.219 29 H -0.181 1.181 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.136 0.864 44 H 0.122 0.878 45 H 0.141 0.859 46 H 0.249 0.751 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.048 0.952 50 H 0.053 0.947 51 H 0.195 0.805 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.531 -10.717 -30.603 34.415 hybrid contribution 0.755 -0.269 1.221 1.460 sum -10.777 -10.986 -29.383 33.169 Atomic orbital electron populations 1.21827 0.92570 1.02207 1.02951 1.22093 0.97576 0.99818 0.91772 0.88440 1.22485 0.96416 0.86369 0.96459 1.48999 1.53650 1.15797 1.17001 1.21183 0.79311 0.79468 0.88964 1.90716 1.42870 1.44262 1.69556 1.21772 1.04311 0.99932 0.90673 1.21627 1.01240 0.96293 0.94847 1.21169 0.94609 0.88943 0.87816 1.22271 0.91915 1.04031 1.03492 1.22782 1.04308 0.95646 0.93109 1.22385 1.05751 0.91638 0.99259 1.21558 0.75525 0.91725 0.81428 1.90736 1.46608 1.72589 1.37571 1.46557 1.61895 1.11954 1.16519 1.22314 0.97311 0.98431 0.83342 1.22390 0.96599 0.97301 0.95327 0.90621 1.20796 0.97118 0.93262 0.84834 1.42798 1.80661 1.04842 1.12321 1.19051 1.34165 0.92184 0.90770 0.92046 1.25446 1.01954 1.02176 0.95806 1.69871 1.52640 1.36228 1.04468 0.85496 0.78459 0.81419 0.76925 1.21016 1.21897 1.18053 0.92607 0.93031 0.89786 0.89501 0.87408 0.87412 0.85519 0.89605 0.92406 0.90945 0.91542 0.89552 0.89939 0.86366 0.87758 0.85930 0.75096 0.93095 0.91249 0.95173 0.94706 0.80463 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.89 71.98 0.64 -1.21 16 2 C -0.09 -1.55 3.17 -9.90 -0.03 -1.58 16 3 H 0.10 1.53 7.85 -2.39 -0.02 1.51 16 4 C 0.10 1.36 6.42 86.53 0.56 1.91 16 5 N -0.62 -13.47 3.29 -810.07 -2.67 -16.14 16 6 C 0.52 11.81 7.89 87.66 0.69 12.50 16 7 O -0.59 -19.63 16.19 -3.05 -0.05 -19.68 16 8 C -0.13 -1.40 4.28 29.85 0.13 -1.28 16 9 C -0.10 -1.17 3.70 30.59 0.11 -1.06 16 10 C 0.16 1.14 0.87 4.06 0.00 1.14 16 11 C -0.16 -0.55 8.41 71.98 0.61 0.05 16 12 C -0.12 -0.68 6.21 31.65 0.20 -0.48 16 13 C -0.15 -1.26 6.86 30.59 0.21 -1.05 16 14 C 0.51 8.43 8.43 87.88 0.74 9.17 16 15 O -0.59 -16.03 18.03 -3.05 -0.06 -16.08 16 16 N -0.71 -7.84 5.40 -419.78 -2.27 -10.10 16 17 C 0.11 3.15 6.44 86.61 0.56 3.71 16 18 C -0.10 -2.55 2.61 -9.70 -0.03 -2.58 16 19 H 0.08 2.14 7.86 -2.39 -0.02 2.12 16 20 C 0.17 5.87 5.58 86.38 0.48 6.35 16 21 N -0.76 -35.38 5.32 -343.44 -1.83 -37.21 16 22 C -0.23 -13.19 10.47 84.03 0.88 -12.31 16 23 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 24 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 25 N -0.98 -63.44 13.97 21.65 0.30 -63.14 16 26 Si 0.95 46.90 27.73 68.60 1.90 48.80 16 27 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 29 H -0.26 -11.55 6.52 99.48 0.65 -10.90 16 30 H 0.05 0.75 8.13 -2.39 -0.02 0.73 16 31 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.72 7.08 -2.39 -0.02 0.70 16 35 H 0.11 0.80 6.89 -2.39 -0.02 0.79 16 36 H 0.13 0.70 6.25 -2.39 -0.01 0.69 16 37 H 0.09 1.09 8.10 -2.39 -0.02 1.07 16 38 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 39 H 0.07 0.17 6.49 -2.39 -0.02 0.16 16 40 H 0.07 0.23 8.14 -2.38 -0.02 0.21 16 41 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.08 0.58 7.91 -2.38 -0.02 0.56 16 43 H 0.12 0.13 7.89 -2.39 -0.02 0.11 16 44 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.41 3.97 7.69 -92.71 -0.71 3.25 16 47 H 0.05 1.79 7.85 -2.39 -0.02 1.77 16 48 H 0.07 2.08 7.93 -2.39 -0.02 2.06 16 49 H 0.03 1.08 7.99 -2.38 -0.02 1.06 16 50 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.36 16.58 5.53 -92.70 -0.51 16.07 16 52 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 Total: -1.00 -84.83 407.47 1.19 -83.64 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.37 Total: 19.88 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 6.21 Total: 10.04 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -6.46 Total: -126.59 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.10 Total: -35.77 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.90 Total: 48.80 kcal Total: -84.83 1.19 -83.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107103085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.316 kcal (2) G-P(sol) polarization free energy of solvation -84.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds