Wall clock time and date at job start Tue Mar 31 2020 20:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.51161 * 2 1 4 4 C 1.53099 * 109.50696 * 239.91333 * 2 1 3 5 5 N 1.47015 * 109.26261 * 183.17622 * 4 2 1 6 6 C 1.46898 * 111.00136 * 182.39165 * 5 4 2 7 7 C 1.47012 * 110.75319 * 58.61021 * 5 4 2 8 8 C 1.53098 * 109.26088 * 301.38965 * 7 5 4 9 9 H 1.08994 * 109.50876 * 296.87034 * 8 7 5 10 10 C 1.50698 * 109.50624 * 176.77761 * 8 7 5 11 11 O 1.21284 * 120.00683 * 245.00073 * 10 8 7 12 12 N 1.34783 * 119.99525 * 65.00203 * 10 8 7 13 13 C 1.46508 * 119.99615 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46737 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47021 * 179.97438 * 14 13 12 16 16 C 1.29456 * 117.68949 * 94.99438 * 15 14 13 17 17 C 1.50325 * 123.64644 * 180.85672 * 16 15 14 18 18 N 1.47001 * 109.16924 * 349.02942 * 17 16 15 19 19 C 1.36937 * 121.37592 * 222.96826 * 18 17 16 20 20 H 1.08001 * 120.00175 * 155.95715 * 19 18 17 21 21 C 1.38809 * 119.99892 * 335.95345 * 19 18 17 22 22 N 1.31614 * 120.00451 * 344.53165 * 21 19 18 23 23 Si 1.86810 * 119.99961 * 164.52569 * 21 19 18 24 24 H 1.48500 * 109.46847 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47159 * 120.00290 * 23 21 19 26 26 H 1.48498 * 109.47053 * 240.00516 * 23 21 19 27 27 C 1.47341 * 117.25140 * 42.94435 * 18 17 16 28 28 C 1.50093 * 117.67575 * 275.00986 * 15 14 13 29 29 O 1.43017 * 109.54317 * 120.10868 * 2 1 3 30 30 H 1.08989 * 109.47236 * 180.08814 * 1 2 3 31 31 H 1.09002 * 109.46925 * 300.08877 * 1 2 3 32 32 H 1.09001 * 109.47165 * 60.08269 * 1 2 3 33 33 H 1.08999 * 109.50747 * 63.24101 * 4 2 1 34 34 H 1.09001 * 109.50686 * 303.10819 * 4 2 1 35 35 H 1.08986 * 109.47199 * 292.40855 * 6 5 4 36 36 H 1.08999 * 109.46840 * 52.41295 * 6 5 4 37 37 H 1.09005 * 109.46961 * 172.40383 * 6 5 4 38 38 H 1.08997 * 109.50974 * 181.45279 * 7 5 4 39 39 H 1.09000 * 109.53743 * 61.34618 * 7 5 4 40 40 H 0.96991 * 120.00233 * 359.97438 * 12 10 8 41 41 H 1.08994 * 109.47231 * 59.99749 * 13 12 10 42 42 H 1.09003 * 109.46810 * 299.99926 * 13 12 10 43 43 H 1.08999 * 109.47127 * 59.99729 * 14 13 12 44 44 H 1.08999 * 109.47095 * 299.99956 * 14 13 12 45 45 H 1.07992 * 118.17987 * 0.89064 * 16 15 14 46 46 H 1.09005 * 109.52370 * 229.12262 * 17 16 15 47 47 H 1.09004 * 109.51830 * 108.93817 * 17 16 15 48 48 H 0.96998 * 120.00776 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.77754 * 57.80967 * 27 18 17 50 50 H 1.08991 * 109.78009 * 178.56214 * 27 18 17 51 51 H 1.09004 * 109.37776 * 40.73396 * 28 15 14 52 52 H 1.08998 * 109.31543 * 281.26623 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5093 -0.7872 -1.2053 6 6 4.0446 -1.4252 -2.4155 7 6 3.9649 -1.4870 0.0047 8 6 3.4344 -0.7559 1.2408 9 1 3.8543 0.2493 1.2773 10 6 3.8315 -1.5126 2.4820 11 8 2.9801 -2.0164 3.1837 12 7 5.1330 -1.6295 2.8124 13 6 5.5190 -2.3647 4.0195 14 6 7.0422 -2.3466 4.1622 15 6 7.4394 -3.1024 5.4041 16 6 7.7624 -4.3490 5.2721 17 6 8.1610 -5.2323 6.4214 18 7 8.3735 -4.4030 7.6164 19 6 9.4406 -4.6122 8.4488 20 1 9.8086 -3.8072 9.0677 21 6 10.0491 -5.8588 8.4972 22 7 9.4375 -6.9097 7.9934 23 14 11.7362 -6.0450 9.2773 24 1 12.2043 -4.7230 9.7658 25 1 11.6524 -6.9922 10.4178 26 1 12.6929 -6.5676 8.2690 27 6 7.3914 -3.3371 7.8813 28 6 7.4320 -2.3563 6.7064 29 8 2.0084 -0.6761 1.1659 30 1 -0.3633 -1.0276 0.0016 31 1 -0.3633 0.5152 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.7267 -0.1791 -2.1391 34 1 1.6337 -1.7341 -1.2763 35 1 3.7633 -2.4781 -2.4258 36 1 3.6364 -0.9313 -3.2973 37 1 5.1312 -1.3391 -2.4212 38 1 5.0545 -1.5000 0.0292 39 1 3.5887 -2.5100 -0.0025 40 1 5.8139 -1.2269 2.2512 41 1 5.1730 -3.3955 3.9433 42 1 5.0670 -1.8933 4.8922 43 1 7.3878 -1.3157 4.2385 44 1 7.4945 -2.8177 3.2895 45 1 7.7452 -4.7782 4.2813 46 1 9.0833 -5.7579 6.1740 47 1 7.3693 -5.9558 6.6162 48 1 9.8629 -7.7808 8.0268 49 1 6.3939 -3.7679 7.9679 50 1 7.6502 -2.8181 8.8041 51 1 6.5562 -1.7085 6.7471 52 1 8.3321 -1.7458 6.7773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160479485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:51 Heat of formation + Delta-G solvation = -61.367852 kcal Electronic energy + Delta-G solvation = -29268.695364 eV Core-core repulsion = 25268.102137 eV Total energy + Delta-G solvation = -4000.593228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.50667 -40.04016 -39.38858 -36.95601 -36.60666 -35.16990 -34.04611 -33.12988 -31.53604 -30.95577 -29.71193 -28.03247 -27.24497 -26.00010 -24.60588 -23.88953 -23.49183 -22.48306 -21.86458 -21.38305 -19.46403 -18.40066 -18.03809 -17.53050 -17.13509 -17.07498 -16.83726 -16.48074 -16.27458 -15.92892 -15.72925 -15.50654 -15.34394 -15.17177 -14.86868 -14.71215 -14.28102 -13.96030 -13.87403 -13.63927 -13.37866 -13.33672 -13.20657 -13.09073 -12.87913 -12.82914 -12.80750 -12.72074 -12.60578 -12.36350 -12.22237 -12.12852 -11.89356 -11.76112 -11.66894 -11.23606 -10.86742 -10.71347 -10.69820 -10.18728 -9.54540 -9.48504 -8.75651 -7.88420 -5.30737 1.38621 1.43652 1.46145 1.46916 1.58193 1.80044 2.50614 2.66679 2.93217 3.28267 3.57479 3.65056 3.68935 3.77999 3.93253 3.97367 4.04754 4.11627 4.12877 4.21393 4.29437 4.32341 4.50254 4.55050 4.55382 4.57199 4.59668 4.67566 4.69319 4.70724 4.83442 4.87186 4.91248 4.98008 5.00789 5.02910 5.07843 5.18276 5.24031 5.24236 5.34268 5.41984 5.50532 5.60863 5.75673 5.85769 5.88210 6.04561 6.28959 6.33386 6.49058 7.12800 7.14988 7.82860 8.37802 9.20342 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027622 B = 0.001809 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.454487 B =15474.669558 C =15956.679911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.081 3.919 3 H 0.080 0.920 4 C 0.021 3.979 5 N -0.542 5.542 6 C 0.022 3.978 7 C 0.033 3.967 8 C 0.084 3.916 9 H 0.116 0.884 10 C 0.516 3.484 11 O -0.572 6.572 12 N -0.706 5.706 13 C 0.133 3.867 14 C -0.077 4.077 15 C -0.120 4.120 16 C -0.175 4.175 17 C 0.206 3.794 18 N -0.615 5.615 19 C -0.256 4.256 20 H 0.072 0.928 21 C -0.059 4.059 22 N -0.942 5.942 23 Si 0.972 3.028 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.290 1.290 27 C 0.134 3.866 28 C -0.087 4.087 29 O -0.389 6.389 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.032 0.968 35 H 0.023 0.977 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.030 0.970 40 H 0.420 0.580 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.055 0.945 47 H 0.001 0.999 48 H 0.249 0.751 49 H 0.015 0.985 50 H 0.059 0.941 51 H 0.086 0.914 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.914 18.259 -24.743 32.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.098 0.902 4 C -0.107 4.107 5 N -0.266 5.266 6 C -0.125 4.125 7 C -0.096 4.096 8 C 0.023 3.977 9 H 0.134 0.866 10 C 0.301 3.699 11 O -0.451 6.451 12 N -0.360 5.360 13 C 0.009 3.991 14 C -0.115 4.115 15 C -0.121 4.121 16 C -0.194 4.194 17 C 0.081 3.919 18 N -0.339 5.339 19 C -0.386 4.386 20 H 0.090 0.910 21 C -0.253 4.253 22 N -0.589 5.589 23 Si 0.800 3.200 24 H -0.189 1.189 25 H -0.220 1.220 26 H -0.216 1.216 27 C 0.009 3.991 28 C -0.126 4.126 29 O -0.308 6.308 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.048 0.952 40 H 0.258 0.742 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.132 0.868 46 H 0.074 0.926 47 H 0.018 0.982 48 H 0.058 0.942 49 H 0.034 0.966 50 H 0.078 0.922 51 H 0.104 0.896 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.399 18.162 -24.077 32.608 hybrid contribution 0.813 -1.663 0.402 1.894 sum -11.587 16.499 -23.675 31.097 Atomic orbital electron populations 1.21769 0.91473 1.02832 1.03871 1.22485 0.96013 0.95877 0.83214 0.90221 1.22938 0.87615 1.00135 1.00031 1.62281 1.09288 1.52484 1.02559 1.22484 1.01760 0.96748 0.91521 1.22670 1.02534 0.95109 0.89280 1.21939 0.83613 1.00451 0.91740 0.86641 1.20600 0.82782 0.80042 0.86451 1.90734 1.51472 1.48731 1.54118 1.45758 1.06798 1.55910 1.27550 1.21211 0.95310 0.95812 0.86758 1.20803 0.92944 1.01959 0.95762 1.20606 1.00906 0.94646 0.95952 1.22825 1.00958 0.96324 0.99280 1.19358 0.97758 0.90654 0.84163 1.44433 1.27040 1.37109 1.25330 1.19583 1.05797 0.94545 1.18649 0.91038 1.25815 1.03045 0.94839 1.01599 1.70204 1.38161 0.98692 1.51873 0.85134 0.79803 0.77800 0.77295 1.18899 1.22041 1.21642 1.21156 0.91252 0.89781 0.96915 1.20743 1.01960 0.97363 0.92529 1.88108 1.19171 1.79102 1.44398 0.92850 0.91947 0.87955 0.86969 0.94927 0.95807 0.89573 0.89739 0.86519 0.95186 0.74229 0.93281 0.92259 0.88536 0.89468 0.86796 0.92649 0.98163 0.94164 0.96645 0.92250 0.89603 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.57 71.98 0.69 -1.01 16 2 C 0.08 1.20 3.42 30.63 0.10 1.30 16 3 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 4 C 0.02 0.25 4.94 86.31 0.43 0.68 16 5 N -0.54 -6.53 4.99 -921.46 -4.59 -11.13 16 6 C 0.02 0.19 9.63 127.69 1.23 1.42 16 7 C 0.03 0.47 4.90 86.31 0.42 0.89 16 8 C 0.08 1.52 3.22 29.88 0.10 1.62 16 9 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 10 C 0.52 12.50 7.18 87.66 0.63 13.13 16 11 O -0.57 -20.51 16.51 15.92 0.26 -20.25 16 12 N -0.71 -12.72 5.52 -463.04 -2.56 -15.27 16 13 C 0.13 3.09 5.66 86.38 0.49 3.58 16 14 C -0.08 -1.64 5.32 29.85 0.16 -1.48 16 15 C -0.12 -3.84 5.11 -15.10 -0.08 -3.92 16 16 C -0.17 -6.69 9.47 27.10 0.26 -6.43 16 17 C 0.21 10.41 5.23 85.42 0.45 10.86 16 18 N -0.62 -32.05 3.01 -703.39 -2.12 -34.17 16 19 C -0.26 -14.41 9.71 84.03 0.82 -13.59 16 20 H 0.07 3.89 7.88 -2.91 -0.02 3.86 16 21 C -0.06 -3.34 5.01 84.86 0.43 -2.92 16 22 N -0.94 -57.19 11.08 21.65 0.24 -56.95 16 23 Si 0.97 45.63 29.58 68.60 2.03 47.66 16 24 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 27 C 0.13 5.71 6.57 86.25 0.57 6.27 16 28 C -0.09 -2.88 5.96 29.69 0.18 -2.70 16 29 O -0.39 -8.97 9.65 -130.02 -1.25 -10.22 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.11 0.82 8.11 -2.39 -0.02 0.80 16 34 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.09 0.50 8.08 -2.39 -0.02 0.48 16 37 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.12 1.05 8.01 -2.39 -0.02 1.03 16 39 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.42 4.15 8.34 -92.71 -0.77 3.37 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.55 8.09 -2.39 -0.02 1.53 16 43 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 44 H 0.09 1.60 7.78 -2.39 -0.02 1.58 16 45 H 0.11 3.78 7.73 -2.91 -0.02 3.75 16 46 H 0.06 3.13 6.41 -2.38 -0.02 3.11 16 47 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 48 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 49 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 50 H 0.06 2.43 7.96 -2.39 -0.02 2.41 16 51 H 0.09 2.33 8.09 -2.38 -0.02 2.31 16 52 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -78.16 411.28 -1.02 -79.18 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.11 Total: 13.45 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 6.86 Total: 7.70 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -9.03 Total: -117.52 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.99 Total: -30.47 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -78.16 -1.02 -79.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160479485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.815 kcal (2) G-P(sol) polarization free energy of solvation -78.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds