Wall clock time and date at job start Tue Mar 31 2020 20:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47072 * 2 1 4 4 C 1.50700 * 109.47128 * 240.00197 * 2 1 3 5 5 O 1.21284 * 119.99802 * 239.99755 * 4 2 1 6 6 N 1.34776 * 120.00311 * 59.99801 * 4 2 1 7 7 C 1.47422 * 125.64498 * 359.97438 * 6 4 2 8 8 C 1.54912 * 104.83500 * 155.91583 * 7 6 4 9 9 C 1.55162 * 101.57717 * 37.00946 * 8 7 6 10 10 H 1.09002 * 110.72059 * 82.86237 * 9 8 7 11 11 N 1.46904 * 110.71777 * 205.95855 * 9 8 7 12 12 C 1.46900 * 110.99872 * 271.15451 * 11 9 8 13 13 C 1.50700 * 109.47094 * 179.97438 * 12 11 9 14 14 O 1.21301 * 119.99887 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00226 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00195 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99958 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00102 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00162 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00188 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47292 * 89.99230 * 20 18 16 22 22 H 1.48497 * 109.47320 * 209.99953 * 20 18 16 23 23 H 1.48506 * 109.46565 * 329.99662 * 20 18 16 24 24 C 1.47018 * 125.65427 * 180.02562 * 6 4 2 25 25 C 1.53000 * 109.47247 * 120.00263 * 2 1 3 26 26 C 1.54266 * 110.02977 * 297.90641 * 25 2 1 27 27 C 1.54969 * 104.16072 * 217.13861 * 26 25 2 28 28 C 1.54884 * 102.77593 * 37.88778 * 27 26 25 29 29 C 1.53879 * 110.03051 * 180.69552 * 25 2 1 30 30 H 1.08999 * 109.47571 * 59.99884 * 1 2 3 31 31 H 1.09006 * 109.47072 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47442 * 299.99795 * 1 2 3 33 33 H 1.09003 * 110.37241 * 37.07952 * 7 6 4 34 34 H 1.08998 * 110.46196 * 274.80100 * 7 6 4 35 35 H 1.08999 * 111.00244 * 278.93675 * 8 7 6 36 36 H 1.08996 * 111.00556 * 155.07846 * 8 7 6 37 37 H 1.00897 * 110.99650 * 147.20225 * 11 9 8 38 38 H 1.08993 * 109.47330 * 300.00361 * 12 11 9 39 39 H 1.09000 * 109.46965 * 60.00477 * 12 11 9 40 40 H 0.96998 * 119.99895 * 0.02562 * 15 13 12 41 41 H 0.96997 * 120.00440 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.88087 * 61.59317 * 24 6 4 43 43 H 1.09003 * 109.87911 * 300.43469 * 24 6 4 44 44 H 1.08995 * 110.01681 * 59.29969 * 25 2 1 45 45 H 1.09005 * 110.48887 * 335.78365 * 26 25 2 46 46 H 1.09003 * 110.48753 * 98.42661 * 26 25 2 47 47 H 1.08997 * 110.71800 * 279.57491 * 27 26 25 48 48 H 1.09000 * 110.76461 * 156.22336 * 27 26 25 49 49 H 1.09002 * 110.48677 * 203.40348 * 28 27 26 50 50 H 1.09005 * 110.48834 * 80.76479 * 28 27 26 51 51 H 1.09001 * 110.02375 * 238.56910 * 29 25 2 52 52 H 1.08997 * 110.03396 * 359.97438 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.8705 0.9317 -2.7336 8 6 1.2940 1.3915 -4.1510 9 6 1.5383 0.0327 -4.8592 10 1 0.6005 -0.3860 -5.2242 11 7 2.5002 0.1855 -5.9590 12 6 1.8164 0.5324 -7.2120 13 6 2.8329 0.6811 -8.3145 14 8 4.0112 0.5139 -8.0797 15 7 2.4328 0.9987 -9.5617 16 6 3.3576 1.1345 -10.5646 17 1 4.4068 0.9865 -10.3553 18 6 2.9452 1.4625 -11.8503 19 7 3.8316 1.5921 -12.8117 20 14 1.1307 1.7192 -12.2122 21 1 0.7814 3.1472 -12.0031 22 1 0.8484 1.3414 -13.6203 23 1 0.3196 0.8727 -11.3005 24 6 2.1257 -0.8434 -3.7328 25 6 2.0400 -0.7213 1.2492 26 6 1.5766 0.0257 2.5169 27 6 2.7747 -0.1019 3.4914 28 6 3.9975 0.0383 2.5511 29 6 3.5786 -0.7136 1.2710 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.0689 1.7176 -2.0049 34 1 -0.1856 0.6624 -2.7220 35 1 2.2092 1.9824 -4.1128 36 1 0.4922 1.9469 -4.6374 37 1 3.0576 -0.6482 -6.0701 38 1 1.1110 -0.2569 -7.4716 39 1 1.2792 1.4722 -7.0845 40 1 1.4906 1.1320 -9.7496 41 1 3.5437 1.8207 -13.7093 42 1 1.7397 -1.8595 -3.8139 43 1 3.2137 -0.8516 -3.7986 44 1 1.6714 -1.7469 1.2644 45 1 1.3785 1.0736 2.2913 46 1 0.6899 -0.4492 2.9369 47 1 2.7726 -1.0764 3.9796 48 1 2.7603 0.7008 4.2287 49 1 4.8767 -0.4272 2.9966 50 1 4.1909 1.0882 2.3308 51 1 3.9566 -1.7356 1.2976 52 1 3.9619 -0.1964 0.3914 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186975807.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:38 Heat of formation + Delta-G solvation = -77.949379 kcal Electronic energy + Delta-G solvation = -29277.419012 eV Core-core repulsion = 25276.106755 eV Total energy + Delta-G solvation = -4001.312257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74966 -38.99685 -38.32932 -37.37892 -34.95139 -33.96401 -33.55829 -31.69426 -30.69590 -29.25749 -29.03811 -27.83372 -26.35202 -24.82333 -23.64357 -22.87161 -20.93409 -20.76652 -20.29571 -19.42020 -19.19835 -18.38244 -17.31651 -16.60055 -16.30245 -16.06431 -15.55546 -15.41744 -15.26726 -14.92768 -14.56912 -14.10614 -13.95954 -13.77216 -13.61611 -13.50174 -13.32786 -13.15906 -12.84379 -12.58770 -12.54519 -12.49700 -12.13433 -11.91450 -11.87636 -11.55907 -11.40098 -11.34964 -11.31228 -11.27322 -11.20215 -11.02359 -10.95122 -10.89461 -10.62032 -10.58463 -9.99794 -9.83813 -9.59900 -8.86177 -8.63556 -8.28267 -8.19910 -6.33069 -3.84769 2.46527 2.69468 2.99853 3.04529 3.13021 3.70507 3.99208 4.02561 4.08248 4.21759 4.29583 4.39017 4.39986 4.59732 4.72899 4.76555 4.78974 4.91221 4.96643 5.03688 5.13756 5.18405 5.21256 5.26552 5.27883 5.31058 5.34213 5.40091 5.45846 5.49358 5.50302 5.60463 5.62059 5.66471 5.67350 5.73354 5.75629 5.76266 5.86154 5.87671 5.98277 6.02170 6.10074 6.14108 6.17920 7.00895 7.28794 7.45504 7.55616 7.98817 8.12127 8.57147 8.92741 9.39880 9.79680 10.80001 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030926 B = 0.001789 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.173640 B =15643.874560 C =16108.441921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 H 0.096 0.904 4 C 0.531 3.469 5 O -0.535 6.535 6 N -0.615 5.615 7 C 0.098 3.902 8 C -0.125 4.125 9 C 0.074 3.926 10 H 0.060 0.940 11 N -0.657 5.657 12 C 0.049 3.951 13 C 0.449 3.551 14 O -0.564 6.564 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.880 5.880 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.107 3.893 25 C -0.071 4.071 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.129 4.129 29 C -0.109 4.109 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.355 0.645 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.370 0.630 41 H 0.274 0.726 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.063 0.937 51 H 0.067 0.933 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.669 -0.895 29.578 32.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 H 0.114 0.886 4 C 0.320 3.680 5 O -0.411 6.411 6 N -0.350 5.350 7 C -0.025 4.025 8 C -0.164 4.164 9 C -0.037 4.037 10 H 0.078 0.922 11 N -0.290 5.290 12 C -0.084 4.084 13 C 0.234 3.766 14 O -0.445 6.445 15 N -0.229 5.229 16 C -0.435 4.435 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.520 5.520 20 Si 0.707 3.293 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.016 4.016 25 C -0.090 4.090 26 C -0.157 4.157 27 C -0.163 4.163 28 C -0.167 4.167 29 C -0.147 4.147 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.175 0.825 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.085 0.915 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.248 -0.897 29.778 31.844 hybrid contribution -1.901 -0.520 -0.962 2.193 sum -13.148 -1.417 28.816 31.705 Atomic orbital electron populations 1.21954 0.93049 1.02905 1.03076 1.21427 0.97427 1.00608 0.92580 0.88589 1.20383 0.79947 0.84524 0.83176 1.90716 1.37877 1.26463 1.86041 1.48400 1.51566 1.29736 1.05290 1.22487 0.94683 0.87568 0.97737 1.22913 1.03084 0.97278 0.93114 1.22553 0.94633 0.95290 0.91216 0.92216 1.60144 1.22442 1.43098 1.03347 1.21751 0.95623 1.01305 0.89702 1.19676 0.89570 0.84171 0.83144 1.90581 1.17823 1.54153 1.81988 1.42196 1.08541 1.63635 1.08542 1.19436 0.92266 1.44919 0.86829 0.86266 1.25043 0.98127 0.97573 0.95415 1.69619 1.33487 1.47115 1.01813 0.86664 0.84774 0.79032 0.78847 1.19589 1.20181 1.19556 1.22017 1.01101 0.96354 0.82136 1.21591 0.95997 0.99365 0.92034 1.22472 0.97946 1.00336 0.94897 1.22502 0.94839 1.01533 0.97395 1.22430 0.97784 1.00435 0.96006 1.22103 0.94416 1.00974 0.97165 0.91509 0.92172 0.91241 0.90354 0.91097 0.89101 0.89932 0.82468 0.93561 0.89370 0.79699 0.91588 0.91446 0.90111 0.90488 0.91427 0.91640 0.91574 0.91735 0.91861 0.91864 0.91453 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.80 37.16 0.33 -0.57 16 2 C -0.10 -0.78 1.36 -91.77 -0.13 -0.90 16 3 H 0.10 0.67 7.83 -51.93 -0.41 0.26 16 4 C 0.53 6.00 6.61 -10.99 -0.07 5.93 16 5 O -0.53 -8.00 15.04 5.55 0.08 -7.91 16 6 N -0.62 -6.33 3.32 -170.52 -0.57 -6.89 16 7 C 0.10 0.73 5.13 -2.53 -0.01 0.71 16 8 C -0.13 -1.13 6.75 -24.58 -0.17 -1.30 16 9 C 0.07 0.80 3.25 -65.88 -0.21 0.58 16 10 H 0.06 0.58 7.86 -51.93 -0.41 0.17 16 11 N -0.66 -9.55 5.95 -106.05 -0.63 -10.18 16 12 C 0.05 0.76 6.04 -4.98 -0.03 0.73 16 13 C 0.45 9.94 7.82 -10.99 -0.09 9.85 16 14 O -0.56 -14.98 15.78 5.54 0.09 -14.89 16 15 N -0.59 -13.78 5.09 -10.96 -0.06 -13.84 16 16 C -0.31 -8.58 10.16 -14.94 -0.15 -8.74 16 17 H 0.12 3.84 7.39 -52.48 -0.39 3.46 16 18 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 19 N -0.88 -25.58 13.96 55.50 0.77 -24.80 16 20 Si 0.88 19.07 27.74 -169.99 -4.71 14.35 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 24 C 0.11 1.22 6.39 -3.07 -0.02 1.20 16 25 C -0.07 -0.58 2.12 -89.50 -0.19 -0.77 16 26 C -0.12 -0.72 5.31 -25.03 -0.13 -0.86 16 27 C -0.13 -0.78 6.91 -24.70 -0.17 -0.95 16 28 C -0.13 -0.96 6.83 -25.08 -0.17 -1.13 16 29 C -0.11 -1.02 5.10 -25.61 -0.13 -1.16 16 30 H 0.07 0.34 4.99 -51.93 -0.26 0.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.31 7.22 -51.93 -0.38 -0.06 16 33 H 0.08 0.46 7.36 -51.93 -0.38 0.08 16 34 H 0.07 0.42 7.07 -51.93 -0.37 0.05 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.35 5.48 8.10 -39.29 -0.32 5.16 16 38 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.07 7.95 -51.93 -0.41 0.66 16 44 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 45 H 0.07 0.37 7.72 -51.93 -0.40 -0.04 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 52 H 0.06 0.67 6.95 -51.93 -0.36 0.31 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -33.95 401.96 -9.38 -43.33 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -8.97 Total: 11.09 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.44 Total: 3.68 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.48 Total: -55.71 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.17 Total: -22.80 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.95 -9.38 -43.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186975807.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.615 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds