Wall clock time and date at job start Tue Mar 31 2020 20:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47072 * 2 1 4 4 C 1.50700 * 109.47128 * 240.00197 * 2 1 3 5 5 O 1.21284 * 119.99802 * 239.99755 * 4 2 1 6 6 N 1.34776 * 120.00311 * 59.99801 * 4 2 1 7 7 C 1.47422 * 125.64498 * 359.97438 * 6 4 2 8 8 C 1.54912 * 104.83500 * 155.91583 * 7 6 4 9 9 C 1.55162 * 101.57717 * 37.00946 * 8 7 6 10 10 H 1.09002 * 110.72059 * 82.86237 * 9 8 7 11 11 N 1.46904 * 110.71777 * 205.95855 * 9 8 7 12 12 C 1.46900 * 110.99872 * 271.15451 * 11 9 8 13 13 C 1.50700 * 109.47094 * 179.97438 * 12 11 9 14 14 O 1.21301 * 119.99887 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00226 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00195 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99958 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00102 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00162 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00188 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47292 * 89.99230 * 20 18 16 22 22 H 1.48497 * 109.47320 * 209.99953 * 20 18 16 23 23 H 1.48506 * 109.46565 * 329.99662 * 20 18 16 24 24 C 1.47018 * 125.65427 * 180.02562 * 6 4 2 25 25 C 1.53000 * 109.47247 * 120.00263 * 2 1 3 26 26 C 1.54266 * 110.02977 * 297.90641 * 25 2 1 27 27 C 1.54969 * 104.16072 * 217.13861 * 26 25 2 28 28 C 1.54884 * 102.77593 * 37.88778 * 27 26 25 29 29 C 1.53879 * 110.03051 * 180.69552 * 25 2 1 30 30 H 1.08999 * 109.47571 * 59.99884 * 1 2 3 31 31 H 1.09006 * 109.47072 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47442 * 299.99795 * 1 2 3 33 33 H 1.09003 * 110.37241 * 37.07952 * 7 6 4 34 34 H 1.08998 * 110.46196 * 274.80100 * 7 6 4 35 35 H 1.08999 * 111.00244 * 278.93675 * 8 7 6 36 36 H 1.08996 * 111.00556 * 155.07846 * 8 7 6 37 37 H 1.00897 * 110.99650 * 147.20225 * 11 9 8 38 38 H 1.08993 * 109.47330 * 300.00361 * 12 11 9 39 39 H 1.09000 * 109.46965 * 60.00477 * 12 11 9 40 40 H 0.96998 * 119.99895 * 0.02562 * 15 13 12 41 41 H 0.96997 * 120.00440 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.88087 * 61.59317 * 24 6 4 43 43 H 1.09003 * 109.87911 * 300.43469 * 24 6 4 44 44 H 1.08995 * 110.01681 * 59.29969 * 25 2 1 45 45 H 1.09005 * 110.48887 * 335.78365 * 26 25 2 46 46 H 1.09003 * 110.48753 * 98.42661 * 26 25 2 47 47 H 1.08997 * 110.71800 * 279.57491 * 27 26 25 48 48 H 1.09000 * 110.76461 * 156.22336 * 27 26 25 49 49 H 1.09002 * 110.48677 * 203.40348 * 28 27 26 50 50 H 1.09005 * 110.48834 * 80.76479 * 28 27 26 51 51 H 1.09001 * 110.02375 * 238.56910 * 29 25 2 52 52 H 1.08997 * 110.03396 * 359.97438 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.8705 0.9317 -2.7336 8 6 1.2940 1.3915 -4.1510 9 6 1.5383 0.0327 -4.8592 10 1 0.6005 -0.3860 -5.2242 11 7 2.5002 0.1855 -5.9590 12 6 1.8164 0.5324 -7.2120 13 6 2.8329 0.6811 -8.3145 14 8 4.0112 0.5139 -8.0797 15 7 2.4328 0.9987 -9.5617 16 6 3.3576 1.1345 -10.5646 17 1 4.4068 0.9865 -10.3553 18 6 2.9452 1.4625 -11.8503 19 7 3.8316 1.5921 -12.8117 20 14 1.1307 1.7192 -12.2122 21 1 0.7814 3.1472 -12.0031 22 1 0.8484 1.3414 -13.6203 23 1 0.3196 0.8727 -11.3005 24 6 2.1257 -0.8434 -3.7328 25 6 2.0400 -0.7213 1.2492 26 6 1.5766 0.0257 2.5169 27 6 2.7747 -0.1019 3.4914 28 6 3.9975 0.0383 2.5511 29 6 3.5786 -0.7136 1.2710 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.0689 1.7176 -2.0049 34 1 -0.1856 0.6624 -2.7220 35 1 2.2092 1.9824 -4.1128 36 1 0.4922 1.9469 -4.6374 37 1 3.0576 -0.6482 -6.0701 38 1 1.1110 -0.2569 -7.4716 39 1 1.2792 1.4722 -7.0845 40 1 1.4906 1.1320 -9.7496 41 1 3.5437 1.8207 -13.7093 42 1 1.7397 -1.8595 -3.8139 43 1 3.2137 -0.8516 -3.7986 44 1 1.6714 -1.7469 1.2644 45 1 1.3785 1.0736 2.2913 46 1 0.6899 -0.4492 2.9369 47 1 2.7726 -1.0764 3.9796 48 1 2.7603 0.7008 4.2287 49 1 4.8767 -0.4272 2.9966 50 1 4.1909 1.0882 2.3308 51 1 3.9566 -1.7356 1.2976 52 1 3.9619 -0.1964 0.3914 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186975807.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:37 Heat of formation + Delta-G solvation = -103.108856 kcal Electronic energy + Delta-G solvation = -29278.510008 eV Core-core repulsion = 25276.106755 eV Total energy + Delta-G solvation = -4002.403254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.54625 -40.35732 -39.46039 -38.26683 -36.25779 -35.66302 -34.29170 -33.74351 -31.57791 -30.16000 -29.64014 -28.52498 -27.73912 -25.84218 -25.03971 -23.53408 -21.65595 -21.44192 -21.32581 -20.98126 -20.26996 -19.92699 -18.16459 -17.68223 -17.41686 -17.03016 -16.94555 -16.51243 -16.22415 -15.90847 -15.70106 -15.44011 -15.03822 -14.76750 -14.55022 -14.41465 -14.29009 -14.23842 -14.10093 -13.80165 -13.49108 -13.47638 -13.22160 -13.05933 -12.86175 -12.54362 -12.40978 -12.30431 -12.13537 -12.00454 -11.96874 -11.89783 -11.86511 -11.78090 -11.54362 -11.50868 -11.44835 -11.27059 -10.70317 -10.44446 -10.24970 -9.69936 -9.39552 -8.40951 -6.02508 1.30909 1.37140 1.46050 1.62384 1.89570 1.96147 2.24092 2.73268 3.15270 3.28878 3.39859 3.56953 3.68193 3.70379 3.74564 3.94983 4.12548 4.14821 4.20404 4.24282 4.30736 4.34876 4.44887 4.45601 4.57891 4.58597 4.64019 4.70879 4.72382 4.76529 4.81110 4.83882 4.85299 4.95983 4.97028 5.03125 5.11266 5.15193 5.23706 5.27789 5.30643 5.32977 5.43061 5.47854 5.53121 5.54508 5.90078 6.03975 6.26249 6.51390 6.59767 6.88274 7.14564 7.39761 7.97025 8.76791 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030926 B = 0.001789 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.173640 B =15643.874560 C =16108.441921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.112 0.888 4 C 0.521 3.479 5 O -0.584 6.584 6 N -0.616 5.616 7 C 0.099 3.901 8 C -0.122 4.122 9 C 0.080 3.920 10 H 0.086 0.914 11 N -0.678 5.678 12 C 0.065 3.935 13 C 0.446 3.554 14 O -0.618 6.618 15 N -0.589 5.589 16 C -0.331 4.331 17 H 0.052 0.948 18 C -0.017 4.017 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.255 1.255 22 H -0.277 1.277 23 H -0.228 1.228 24 C 0.107 3.893 25 C -0.071 4.071 26 C -0.111 4.111 27 C -0.123 4.123 28 C -0.128 4.128 29 C -0.110 4.110 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.344 0.656 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.391 0.609 41 H 0.279 0.721 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.041 0.959 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.063 0.865 31.407 36.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.129 0.871 4 C 0.312 3.688 5 O -0.464 6.464 6 N -0.350 5.350 7 C -0.023 4.023 8 C -0.161 4.161 9 C -0.030 4.030 10 H 0.104 0.896 11 N -0.311 5.311 12 C -0.067 4.067 13 C 0.234 3.766 14 O -0.502 6.502 15 N -0.231 5.231 16 C -0.460 4.460 17 H 0.070 0.930 18 C -0.215 4.215 19 N -0.576 5.576 20 Si 0.787 3.213 21 H -0.180 1.180 22 H -0.202 1.202 23 H -0.152 1.152 24 C -0.017 4.017 25 C -0.090 4.090 26 C -0.148 4.148 27 C -0.161 4.161 28 C -0.165 4.165 29 C -0.148 4.148 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.163 0.837 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.227 0.773 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.099 0.901 49 H 0.079 0.921 50 H 0.088 0.912 51 H 0.060 0.940 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -16.685 0.889 31.636 35.777 hybrid contribution -0.015 -1.126 -1.503 1.878 sum -16.700 -0.237 30.133 34.452 Atomic orbital electron populations 1.21960 0.90835 1.02812 1.04835 1.21456 0.99059 1.00500 0.90240 0.87051 1.21158 0.79188 0.84131 0.84354 1.90693 1.40112 1.28841 1.86799 1.48531 1.51499 1.30402 1.04535 1.22744 0.95492 0.86807 0.97249 1.22928 1.03055 0.96027 0.94045 1.22618 0.94324 0.96507 0.89537 0.89631 1.60162 1.23882 1.43051 1.03999 1.21681 0.93576 1.04180 0.87248 1.21052 0.90273 0.81261 0.83988 1.90563 1.20998 1.55671 1.83000 1.42001 1.08684 1.64320 1.08073 1.19001 0.90688 1.47174 0.89148 0.92956 1.26168 1.05095 0.96071 0.94179 1.69812 1.37067 1.48094 1.02626 0.85329 0.76461 0.80281 0.79197 1.17974 1.20210 1.15160 1.21901 0.99365 0.96856 0.83570 1.21576 0.94718 0.98974 0.93723 1.22458 0.98130 1.00966 0.93286 1.22515 0.94078 1.02065 0.97434 1.22426 0.98513 1.00347 0.95223 1.22063 0.95833 0.99471 0.97428 0.90127 0.93209 0.89059 0.88291 0.88236 0.91357 0.87244 0.83726 0.90108 0.86049 0.77323 0.91152 0.91769 0.93248 0.92361 0.89804 0.90365 0.91827 0.90111 0.92086 0.91195 0.93996 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.80 71.98 0.63 -0.58 16 2 C -0.09 -1.28 1.36 -11.54 -0.02 -1.29 16 3 H 0.11 1.24 7.83 -2.38 -0.02 1.22 16 4 C 0.52 11.74 6.61 87.66 0.58 12.32 16 5 O -0.58 -18.62 15.04 -3.04 -0.05 -18.67 16 6 N -0.62 -11.92 3.32 -811.81 -2.70 -14.61 16 7 C 0.10 1.08 5.13 86.86 0.45 1.53 16 8 C -0.12 -1.77 6.75 31.99 0.22 -1.56 16 9 C 0.08 1.52 3.25 46.10 0.15 1.67 16 10 H 0.09 1.26 7.86 -2.39 -0.02 1.24 16 11 N -0.68 -18.93 5.95 -489.45 -2.91 -21.84 16 12 C 0.07 1.82 6.04 85.56 0.52 2.34 16 13 C 0.45 19.69 7.82 87.66 0.69 20.38 16 14 O -0.62 -34.36 15.78 -3.09 -0.05 -34.41 16 15 N -0.59 -27.16 5.09 -306.98 -1.56 -28.73 16 16 C -0.33 -19.33 10.16 84.04 0.85 -18.47 16 17 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 18 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 19 N -0.94 -56.37 13.96 21.66 0.30 -56.07 16 20 Si 0.97 37.90 27.74 68.60 1.90 39.80 16 21 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 22 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 23 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 24 C 0.11 2.42 6.39 86.73 0.55 2.97 16 25 C -0.07 -1.12 2.12 -10.07 -0.02 -1.14 16 26 C -0.11 -1.06 5.31 31.70 0.17 -0.90 16 27 C -0.12 -1.32 6.91 31.91 0.22 -1.10 16 28 C -0.13 -1.84 6.83 31.67 0.22 -1.63 16 29 C -0.11 -2.19 5.10 31.32 0.16 -2.03 16 30 H 0.08 0.45 4.99 -2.39 -0.01 0.43 16 31 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.09 0.40 7.22 -2.39 -0.02 0.38 16 33 H 0.10 0.73 7.36 -2.39 -0.02 0.71 16 34 H 0.10 0.62 7.07 -2.39 -0.02 0.60 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.34 10.84 8.10 -89.70 -0.73 10.11 16 38 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 39 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.39 14.59 5.76 -92.71 -0.53 14.06 16 41 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.41 7.95 -2.39 -0.02 1.39 16 44 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 45 H 0.08 0.57 7.72 -2.38 -0.02 0.55 16 46 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 51 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.04 0.95 6.95 -2.39 -0.02 0.93 16 Total: -1.00 -84.07 401.96 0.37 -83.70 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -0.40 Total: 38.76 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 5.83 Total: 12.06 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -6.87 Total: -121.25 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -0.09 Total: -53.08 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 1.90 Total: 39.80 kcal Total: -84.07 0.37 -83.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186975807.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.408 kcal (2) G-P(sol) polarization free energy of solvation -84.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds