Wall clock time and date at job start Tue Mar 31 2020 20:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46807 * 2 1 4 4 C 1.50696 * 109.46757 * 119.99575 * 2 1 3 5 5 O 1.21283 * 119.99766 * 84.68367 * 4 2 1 6 6 N 1.34776 * 120.00249 * 264.67561 * 4 2 1 7 7 C 1.47420 * 125.64774 * 175.08901 * 6 4 2 8 8 C 1.54914 * 104.83178 * 155.91831 * 7 6 4 9 9 C 1.55155 * 101.58096 * 37.00758 * 8 7 6 10 10 H 1.09003 * 110.72121 * 82.85973 * 9 8 7 11 11 N 1.46900 * 110.71865 * 205.95786 * 9 8 7 12 12 C 1.46904 * 110.99864 * 271.15389 * 11 9 8 13 13 C 1.50706 * 109.46940 * 180.02562 * 12 11 9 14 14 O 1.21289 * 119.99616 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99936 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00128 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99276 * 359.97438 * 16 15 13 18 18 C 1.38948 * 119.99842 * 180.02562 * 16 15 13 19 19 N 1.31405 * 120.00179 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99704 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46917 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46702 * 119.99728 * 20 18 16 23 23 H 1.48496 * 109.47238 * 240.00063 * 20 18 16 24 24 C 1.47019 * 125.64672 * 355.14281 * 6 4 2 25 25 C 1.52999 * 109.47234 * 240.00027 * 2 1 3 26 26 C 1.54263 * 110.03212 * 177.17034 * 25 2 1 27 27 C 1.54895 * 104.19486 * 217.10470 * 26 25 2 28 28 C 1.54889 * 102.74861 * 37.93693 * 27 26 25 29 29 C 1.53872 * 110.03673 * 59.99890 * 25 2 1 30 30 H 1.09000 * 109.47432 * 294.15258 * 1 2 3 31 31 H 1.09006 * 109.46822 * 54.15208 * 1 2 3 32 32 H 1.09003 * 109.47328 * 174.14776 * 1 2 3 33 33 H 1.09001 * 110.37035 * 37.08346 * 7 6 4 34 34 H 1.08998 * 110.46056 * 274.80253 * 7 6 4 35 35 H 1.08997 * 111.00379 * 278.93301 * 8 7 6 36 36 H 1.09000 * 111.00585 * 155.08254 * 8 7 6 37 37 H 1.00904 * 110.99519 * 147.20528 * 11 9 8 38 38 H 1.08992 * 109.47417 * 300.00267 * 12 11 9 39 39 H 1.09002 * 109.46852 * 60.00500 * 12 11 9 40 40 H 0.97001 * 120.00038 * 0.02562 * 15 13 12 41 41 H 0.97003 * 119.99664 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.88280 * 61.59393 * 24 6 4 43 43 H 1.08999 * 109.88017 * 300.42911 * 24 6 4 44 44 H 1.09004 * 110.01295 * 298.60827 * 25 2 1 45 45 H 1.09005 * 110.48299 * 335.77833 * 26 25 2 46 46 H 1.08993 * 110.49373 * 98.42447 * 26 25 2 47 47 H 1.08999 * 110.75234 * 279.62232 * 27 26 25 48 48 H 1.08993 * 110.75751 * 156.25347 * 27 26 25 49 49 H 1.08994 * 110.48556 * 203.38004 * 28 27 26 50 50 H 1.09000 * 110.59789 * 80.79452 * 28 27 26 51 51 H 1.08999 * 110.03480 * 238.57286 * 29 25 2 52 52 H 1.09003 * 110.02734 * 359.94830 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.1426 -1.9181 1.2309 6 7 2.3590 -0.0034 2.3305 7 6 2.7633 -0.5727 3.6289 8 6 3.5953 0.5430 4.3092 9 6 2.8301 1.8173 3.8645 10 1 1.9720 1.9976 4.5120 11 7 3.7241 2.9829 3.8531 12 6 3.7414 3.6460 5.1638 13 6 4.6667 4.8345 5.1133 14 8 5.2535 5.1029 4.0863 15 7 4.8420 5.5990 6.2093 16 6 5.6833 6.6805 6.1633 17 1 6.2058 6.9195 5.2488 18 6 5.8645 7.4684 7.2934 19 7 5.2291 7.1771 8.4061 20 14 7.0114 8.9416 7.2308 21 1 7.6002 9.0530 5.8721 22 1 6.2479 10.1767 7.5417 23 1 8.0972 8.7664 8.2286 24 6 2.3702 1.4630 2.4347 25 6 2.0401 -0.7212 -1.2492 26 6 3.5810 -0.6671 -1.2986 27 6 3.9070 -0.4939 -2.8029 28 6 2.7855 0.4578 -3.2883 29 6 1.5343 -0.0060 -2.5143 30 1 -0.3634 0.4205 0.9377 31 1 -0.3633 0.6019 -0.8331 32 1 -0.3634 -1.0223 -0.1048 33 1 3.3736 -1.4633 3.4792 34 1 1.8859 -0.8116 4.2299 35 1 4.6187 0.5509 3.9342 36 1 3.5792 0.4361 5.3939 37 1 3.4649 3.6302 3.1237 38 1 2.7349 3.9800 5.4154 39 1 4.0914 2.9445 5.9212 40 1 4.3730 5.3840 7.0307 41 1 5.3559 7.7270 9.1951 42 1 1.3682 1.8547 2.2598 43 1 3.0660 1.8810 1.7072 44 1 1.7021 -1.7575 -1.2458 45 1 3.9512 0.1844 -0.7275 46 1 4.0077 -1.5959 -0.9203 47 1 3.8534 -1.4506 -3.3223 48 1 4.8869 -0.0355 -2.9355 49 1 2.6317 0.3499 -4.3619 50 1 3.0259 1.4917 -3.0403 51 1 0.9516 -0.6954 -3.1253 52 1 0.9247 0.8544 -2.2382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186975808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:44 Heat of formation + Delta-G solvation = -88.810867 kcal Electronic energy + Delta-G solvation = -29479.954263 eV Core-core repulsion = 25478.171017 eV Total energy + Delta-G solvation = -4001.783246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64324 -38.91018 -38.20815 -37.40443 -34.71298 -33.83542 -33.60887 -31.28662 -30.73476 -29.10479 -28.98077 -27.83311 -26.13360 -24.90123 -23.92750 -22.72922 -20.89041 -20.70347 -20.07131 -19.37840 -18.98439 -17.94111 -17.55217 -16.74466 -16.31505 -15.77444 -15.52898 -15.26965 -15.08282 -14.81038 -14.54183 -14.12754 -13.73811 -13.65551 -13.61373 -13.49600 -13.43491 -13.11482 -12.97870 -12.67067 -12.43070 -12.29745 -11.80925 -11.75205 -11.65376 -11.48737 -11.41249 -11.28589 -11.25743 -11.23460 -11.11815 -10.92756 -10.88636 -10.81852 -10.60106 -10.37082 -10.26106 -9.83130 -9.55887 -8.82827 -8.53292 -8.19890 -8.00509 -6.45547 -3.86450 2.47685 2.74869 3.13806 3.24812 3.31872 3.85372 3.94541 4.14108 4.24653 4.27815 4.33017 4.38285 4.48618 4.70585 4.79853 4.88711 4.97096 5.03609 5.07034 5.13296 5.18509 5.19837 5.27066 5.32944 5.35129 5.37638 5.42904 5.46105 5.49734 5.52776 5.60894 5.63028 5.67376 5.69945 5.75121 5.76659 5.82125 5.88719 5.90491 6.02279 6.07289 6.08225 6.14345 6.21793 6.24076 7.09049 7.31921 7.51339 7.52021 8.00855 8.02335 8.56675 9.14066 9.49883 10.00808 10.72148 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016968 B = 0.002027 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.809642 B =13812.870325 C =14766.673955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.090 0.910 4 C 0.537 3.463 5 O -0.542 6.542 6 N -0.616 5.616 7 C 0.104 3.896 8 C -0.123 4.123 9 C 0.074 3.926 10 H 0.061 0.939 11 N -0.656 5.656 12 C 0.051 3.949 13 C 0.440 3.560 14 O -0.583 6.583 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.099 3.901 25 C -0.075 4.075 26 C -0.122 4.122 27 C -0.125 4.125 28 C -0.126 4.126 29 C -0.121 4.121 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.352 0.648 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.064 0.936 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 -15.061 -15.241 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.108 0.892 4 C 0.326 3.674 5 O -0.418 6.418 6 N -0.350 5.350 7 C -0.018 4.018 8 C -0.162 4.162 9 C -0.036 4.036 10 H 0.079 0.921 11 N -0.290 5.290 12 C -0.081 4.081 13 C 0.225 3.775 14 O -0.467 6.467 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.024 4.024 25 C -0.094 4.094 26 C -0.160 4.160 27 C -0.162 4.162 28 C -0.163 4.163 29 C -0.158 4.158 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.172 0.828 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.032 -15.827 -15.695 24.443 hybrid contribution -0.612 1.190 0.839 1.580 sum -10.644 -14.636 -14.856 23.414 Atomic orbital electron populations 1.21755 0.92581 1.03008 1.02473 1.21444 0.97609 1.00495 0.92720 0.89159 1.20327 0.76679 0.87210 0.83160 1.90679 1.53995 1.14193 1.82982 1.48448 1.67663 1.07100 1.11802 1.22269 0.98535 0.97627 0.83398 1.22892 1.00223 0.92403 1.00700 1.22547 0.94048 0.92496 0.94554 0.92122 1.60158 1.52842 1.10141 1.05815 1.21724 0.98335 0.96187 0.91890 1.19764 0.86906 0.85610 0.85177 1.90529 1.51855 1.72988 1.31359 1.41870 1.41088 1.25553 1.11451 1.19750 1.21006 1.03222 0.98873 0.87845 1.25271 0.98307 0.99544 0.94847 1.69616 1.42677 1.40205 1.01743 0.85799 0.79540 0.80445 0.78565 1.19195 1.20759 1.20715 1.22170 1.01291 0.80668 0.98294 1.21672 0.95582 0.99936 0.92205 1.22449 0.94863 1.02083 0.96558 1.22483 0.98513 0.99465 0.95745 1.22369 0.95016 0.99491 0.99452 1.22259 0.97763 1.00095 0.95710 0.92365 0.91056 0.91791 0.90263 0.91583 0.89250 0.89928 0.82807 0.93652 0.89457 0.77453 0.91890 0.91282 0.90056 0.89907 0.91660 0.91428 0.91603 0.91554 0.91837 0.91520 0.91707 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.81 37.16 0.33 -0.73 16 2 C -0.10 -0.91 1.73 -91.77 -0.16 -1.07 16 3 H 0.09 0.74 6.90 -51.93 -0.36 0.39 16 4 C 0.54 6.40 6.24 -10.99 -0.07 6.33 16 5 O -0.54 -8.23 16.48 5.56 0.09 -8.14 16 6 N -0.62 -6.75 3.33 -170.53 -0.57 -7.32 16 7 C 0.10 1.10 6.93 -2.53 -0.02 1.08 16 8 C -0.12 -1.31 6.75 -24.58 -0.17 -1.48 16 9 C 0.07 0.81 3.25 -65.88 -0.21 0.60 16 10 H 0.06 0.61 7.86 -51.93 -0.41 0.20 16 11 N -0.66 -9.49 5.95 -106.05 -0.63 -10.13 16 12 C 0.05 0.83 6.04 -4.97 -0.03 0.80 16 13 C 0.44 9.96 7.82 -10.98 -0.09 9.87 16 14 O -0.58 -15.31 15.78 5.55 0.09 -15.22 16 15 N -0.56 -13.87 5.29 -10.96 -0.06 -13.92 16 16 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 20 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.10 0.97 5.51 -3.07 -0.02 0.95 16 25 C -0.08 -0.67 2.19 -89.51 -0.20 -0.87 16 26 C -0.12 -1.17 5.75 -25.07 -0.14 -1.31 16 27 C -0.12 -1.00 6.91 -24.74 -0.17 -1.17 16 28 C -0.13 -0.90 6.83 -25.07 -0.17 -1.07 16 29 C -0.12 -0.86 5.97 -25.62 -0.15 -1.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.42 6.66 -51.93 -0.35 0.07 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.90 7.99 -51.93 -0.42 0.48 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.35 5.17 8.09 -39.29 -0.32 4.85 16 38 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 44 H 0.08 0.85 7.83 -51.93 -0.41 0.44 16 45 H 0.06 0.66 7.84 -51.93 -0.41 0.26 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.07 0.44 6.34 -51.93 -0.33 0.11 16 LS Contribution 411.18 15.07 6.20 6.20 Total: -1.00 -32.07 411.18 -9.82 -41.89 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -9.14 Total: 11.24 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.51 Total: 3.08 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.53 Total: -54.75 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.36 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.07 -9.82 -41.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186975808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.918 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds