Wall clock time and date at job start Tue Mar 31 2020 20:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46807 * 2 1 4 4 C 1.50696 * 109.46757 * 119.99575 * 2 1 3 5 5 O 1.21283 * 119.99766 * 84.68367 * 4 2 1 6 6 N 1.34776 * 120.00249 * 264.67561 * 4 2 1 7 7 C 1.47420 * 125.64774 * 175.08901 * 6 4 2 8 8 C 1.54914 * 104.83178 * 155.91831 * 7 6 4 9 9 C 1.55155 * 101.58096 * 37.00758 * 8 7 6 10 10 H 1.09003 * 110.72121 * 82.85973 * 9 8 7 11 11 N 1.46900 * 110.71865 * 205.95786 * 9 8 7 12 12 C 1.46904 * 110.99864 * 271.15389 * 11 9 8 13 13 C 1.50706 * 109.46940 * 180.02562 * 12 11 9 14 14 O 1.21289 * 119.99616 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99936 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00128 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99276 * 359.97438 * 16 15 13 18 18 C 1.38948 * 119.99842 * 180.02562 * 16 15 13 19 19 N 1.31405 * 120.00179 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99704 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46917 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46702 * 119.99728 * 20 18 16 23 23 H 1.48496 * 109.47238 * 240.00063 * 20 18 16 24 24 C 1.47019 * 125.64672 * 355.14281 * 6 4 2 25 25 C 1.52999 * 109.47234 * 240.00027 * 2 1 3 26 26 C 1.54263 * 110.03212 * 177.17034 * 25 2 1 27 27 C 1.54895 * 104.19486 * 217.10470 * 26 25 2 28 28 C 1.54889 * 102.74861 * 37.93693 * 27 26 25 29 29 C 1.53872 * 110.03673 * 59.99890 * 25 2 1 30 30 H 1.09000 * 109.47432 * 294.15258 * 1 2 3 31 31 H 1.09006 * 109.46822 * 54.15208 * 1 2 3 32 32 H 1.09003 * 109.47328 * 174.14776 * 1 2 3 33 33 H 1.09001 * 110.37035 * 37.08346 * 7 6 4 34 34 H 1.08998 * 110.46056 * 274.80253 * 7 6 4 35 35 H 1.08997 * 111.00379 * 278.93301 * 8 7 6 36 36 H 1.09000 * 111.00585 * 155.08254 * 8 7 6 37 37 H 1.00904 * 110.99519 * 147.20528 * 11 9 8 38 38 H 1.08992 * 109.47417 * 300.00267 * 12 11 9 39 39 H 1.09002 * 109.46852 * 60.00500 * 12 11 9 40 40 H 0.97001 * 120.00038 * 0.02562 * 15 13 12 41 41 H 0.97003 * 119.99664 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.88280 * 61.59393 * 24 6 4 43 43 H 1.08999 * 109.88017 * 300.42911 * 24 6 4 44 44 H 1.09004 * 110.01295 * 298.60827 * 25 2 1 45 45 H 1.09005 * 110.48299 * 335.77833 * 26 25 2 46 46 H 1.08993 * 110.49373 * 98.42447 * 26 25 2 47 47 H 1.08999 * 110.75234 * 279.62232 * 27 26 25 48 48 H 1.08993 * 110.75751 * 156.25347 * 27 26 25 49 49 H 1.08994 * 110.48556 * 203.38004 * 28 27 26 50 50 H 1.09000 * 110.59789 * 80.79452 * 28 27 26 51 51 H 1.08999 * 110.03480 * 238.57286 * 29 25 2 52 52 H 1.09003 * 110.02734 * 359.94830 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.1426 -1.9181 1.2309 6 7 2.3590 -0.0034 2.3305 7 6 2.7633 -0.5727 3.6289 8 6 3.5953 0.5430 4.3092 9 6 2.8301 1.8173 3.8645 10 1 1.9720 1.9976 4.5120 11 7 3.7241 2.9829 3.8531 12 6 3.7414 3.6460 5.1638 13 6 4.6667 4.8345 5.1133 14 8 5.2535 5.1029 4.0863 15 7 4.8420 5.5990 6.2093 16 6 5.6833 6.6805 6.1633 17 1 6.2058 6.9195 5.2488 18 6 5.8645 7.4684 7.2934 19 7 5.2291 7.1771 8.4061 20 14 7.0114 8.9416 7.2308 21 1 7.6002 9.0530 5.8721 22 1 6.2479 10.1767 7.5417 23 1 8.0972 8.7664 8.2286 24 6 2.3702 1.4630 2.4347 25 6 2.0401 -0.7212 -1.2492 26 6 3.5810 -0.6671 -1.2986 27 6 3.9070 -0.4939 -2.8029 28 6 2.7855 0.4578 -3.2883 29 6 1.5343 -0.0060 -2.5143 30 1 -0.3634 0.4205 0.9377 31 1 -0.3633 0.6019 -0.8331 32 1 -0.3634 -1.0223 -0.1048 33 1 3.3736 -1.4633 3.4792 34 1 1.8859 -0.8116 4.2299 35 1 4.6187 0.5509 3.9342 36 1 3.5792 0.4361 5.3939 37 1 3.4649 3.6302 3.1237 38 1 2.7349 3.9800 5.4154 39 1 4.0914 2.9445 5.9212 40 1 4.3730 5.3840 7.0307 41 1 5.3559 7.7270 9.1951 42 1 1.3682 1.8547 2.2598 43 1 3.0660 1.8810 1.7072 44 1 1.7021 -1.7575 -1.2458 45 1 3.9512 0.1844 -0.7275 46 1 4.0077 -1.5959 -0.9203 47 1 3.8534 -1.4506 -3.3223 48 1 4.8869 -0.0355 -2.9355 49 1 2.6317 0.3499 -4.3619 50 1 3.0259 1.4917 -3.0403 51 1 0.9516 -0.6954 -3.1253 52 1 0.9247 0.8544 -2.2382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186975808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:43 Heat of formation + Delta-G solvation = -110.096251 kcal Electronic energy + Delta-G solvation = -29480.877266 eV Core-core repulsion = 25478.171017 eV Total energy + Delta-G solvation = -4002.706250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51135 -40.20905 -39.43751 -38.38100 -36.16627 -35.48715 -34.35218 -33.24968 -31.68949 -30.07546 -29.70293 -28.46478 -27.68227 -25.82077 -25.44327 -23.52095 -21.66513 -21.51162 -21.14302 -20.75801 -19.94333 -19.76748 -18.40991 -17.81303 -17.63081 -16.84493 -16.67069 -16.38565 -16.18418 -16.00126 -15.77319 -15.54622 -15.18457 -14.78540 -14.44522 -14.28045 -14.19218 -14.10073 -13.90059 -13.80795 -13.49681 -13.47268 -13.16407 -13.11728 -12.84461 -12.54654 -12.43207 -12.38684 -12.15757 -12.12395 -12.09541 -11.91947 -11.88609 -11.82582 -11.56781 -11.51186 -11.49918 -11.24195 -10.75282 -10.32401 -9.99909 -9.72657 -9.36014 -8.45798 -5.94003 1.37431 1.43126 1.56771 1.57073 1.89689 2.07504 2.30102 2.87849 3.22126 3.35631 3.45271 3.55442 3.59695 3.67621 3.75368 3.94519 4.13780 4.20119 4.23617 4.26111 4.32602 4.35681 4.42027 4.52809 4.54035 4.60877 4.65015 4.66312 4.70776 4.76225 4.78849 4.79479 4.82764 4.85117 4.91656 4.97319 5.03628 5.09682 5.18175 5.20583 5.26423 5.31647 5.35545 5.42746 5.49077 5.51367 5.89529 6.10427 6.36751 6.46807 6.61551 7.10279 7.14421 7.58475 8.13610 8.71695 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016968 B = 0.002027 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.809642 B =13812.870325 C =14766.673955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 H 0.102 0.898 4 C 0.531 3.469 5 O -0.583 6.583 6 N -0.617 5.617 7 C 0.104 3.896 8 C -0.119 4.119 9 C 0.078 3.922 10 H 0.083 0.917 11 N -0.671 5.671 12 C 0.067 3.933 13 C 0.438 3.562 14 O -0.623 6.623 15 N -0.574 5.574 16 C -0.331 4.331 17 H 0.078 0.922 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.991 3.009 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.273 1.273 24 C 0.102 3.898 25 C -0.073 4.073 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.115 4.115 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.350 0.650 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.397 0.603 41 H 0.277 0.723 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.044 0.956 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.067 0.933 51 H 0.072 0.928 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.567 -14.326 -15.433 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 H 0.120 0.880 4 C 0.322 3.678 5 O -0.463 6.463 6 N -0.351 5.351 7 C -0.018 4.018 8 C -0.158 4.158 9 C -0.032 4.032 10 H 0.100 0.900 11 N -0.304 5.304 12 C -0.065 4.065 13 C 0.226 3.774 14 O -0.510 6.510 15 N -0.212 5.212 16 C -0.461 4.461 17 H 0.096 0.904 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.815 3.185 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.021 4.021 25 C -0.092 4.092 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.161 4.161 29 C -0.153 4.153 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.170 0.830 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.231 0.769 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.091 0.909 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.589 -15.092 -15.865 24.775 hybrid contribution -0.104 0.885 0.889 1.259 sum -11.692 -14.207 -14.977 23.724 Atomic orbital electron populations 1.21760 0.91057 1.02926 1.03671 1.21496 0.98755 1.00481 0.91123 0.87983 1.20897 0.76062 0.86881 0.83968 1.90657 1.55874 1.16038 1.83716 1.48553 1.66976 1.07752 1.11783 1.22288 0.98915 0.97079 0.83541 1.22837 0.98978 0.92422 1.01514 1.22585 0.94038 0.90819 0.95719 0.89951 1.60104 1.54719 1.10777 1.04838 1.21569 0.97856 0.93707 0.93384 1.20901 0.86469 0.86298 0.83762 1.90500 1.53474 1.74273 1.32720 1.41943 1.41280 1.25612 1.12324 1.19675 1.22616 1.05198 0.98562 0.90373 1.26010 0.99403 1.01655 0.94251 1.69669 1.43259 1.41078 1.02097 0.84898 0.77863 0.77526 0.78231 1.19815 1.19597 1.19787 1.22212 1.02634 0.79738 0.97492 1.21636 0.94874 0.99310 0.93398 1.22423 0.95610 1.00489 0.97623 1.22491 0.99129 1.00036 0.94504 1.22374 0.94409 0.99135 1.00194 1.22244 0.97909 1.00519 0.94616 0.91880 0.88880 0.92766 0.91715 0.90049 0.91400 0.88461 0.83003 0.90851 0.87788 0.76923 0.91351 0.88668 0.90528 0.91708 0.92469 0.93704 0.91352 0.91485 0.90591 0.91396 0.90889 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.81 71.98 0.63 -1.13 16 2 C -0.10 -1.64 1.73 -11.54 -0.02 -1.66 16 3 H 0.10 1.48 6.90 -2.39 -0.02 1.46 16 4 C 0.53 12.51 6.24 87.66 0.55 13.05 16 5 O -0.58 -18.24 16.48 -3.04 -0.05 -18.29 16 6 N -0.62 -12.89 3.33 -811.82 -2.70 -15.59 16 7 C 0.10 2.10 6.93 86.86 0.60 2.70 16 8 C -0.12 -2.35 6.75 31.99 0.22 -2.14 16 9 C 0.08 1.51 3.25 46.10 0.15 1.66 16 10 H 0.08 1.32 7.86 -2.39 -0.02 1.30 16 11 N -0.67 -18.24 5.95 -489.43 -2.91 -21.15 16 12 C 0.07 2.04 6.04 85.56 0.52 2.56 16 13 C 0.44 19.72 7.82 87.66 0.69 20.41 16 14 O -0.62 -33.15 15.78 -3.06 -0.05 -33.20 16 15 N -0.57 -28.38 5.29 -306.99 -1.62 -30.01 16 16 C -0.33 -18.38 9.68 84.04 0.81 -17.56 16 17 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 18 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 19 N -0.92 -48.66 13.05 21.66 0.28 -48.38 16 20 Si 0.99 42.25 29.55 68.60 2.03 44.28 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 C 0.10 1.77 5.51 86.73 0.48 2.25 16 25 C -0.07 -1.27 2.19 -10.07 -0.02 -1.30 16 26 C -0.12 -2.44 5.75 31.67 0.18 -2.25 16 27 C -0.12 -1.94 6.91 31.89 0.22 -1.72 16 28 C -0.12 -1.56 6.83 31.67 0.22 -1.34 16 29 C -0.12 -1.42 5.97 31.32 0.19 -1.23 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 0.80 6.66 -2.38 -0.02 0.78 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 1.49 7.99 -2.39 -0.02 1.47 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.35 9.77 8.09 -89.69 -0.73 9.05 16 38 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 39 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.40 18.53 7.90 -92.71 -0.73 17.80 16 41 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.43 7.72 -2.39 -0.02 1.41 16 44 H 0.06 1.37 7.83 -2.39 -0.02 1.35 16 45 H 0.06 1.19 7.84 -2.38 -0.02 1.17 16 46 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.08 0.80 6.34 -2.39 -0.02 0.78 16 Total: -1.00 -70.84 411.18 0.31 -70.53 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: -0.54 Total: 39.74 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 5.87 Total: 12.06 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -6.95 Total: -115.12 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -0.10 Total: -51.49 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -70.84 0.31 -70.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186975808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.562 kcal (2) G-P(sol) polarization free energy of solvation -70.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds