Wall clock time and date at job start Tue Mar 31 2020 20:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47449 * 2 1 4 4 C 1.50703 * 109.47481 * 240.00075 * 2 1 3 5 5 O 1.21284 * 120.00149 * 274.97280 * 4 2 1 6 6 N 1.34779 * 120.00131 * 94.97115 * 4 2 1 7 7 C 1.47021 * 125.64217 * 4.73178 * 6 4 2 8 8 C 1.54321 * 107.27226 * 180.96693 * 7 6 4 9 9 C 1.55160 * 102.86219 * 22.52993 * 8 7 6 10 10 H 1.08998 * 111.03865 * 82.39116 * 9 8 7 11 11 N 1.46894 * 111.00390 * 206.22953 * 9 8 7 12 12 C 1.46899 * 111.00027 * 168.24262 * 11 9 8 13 13 C 1.46907 * 110.99797 * 292.19033 * 11 9 8 14 14 C 1.50706 * 109.46945 * 169.99896 * 13 11 9 15 15 O 1.21291 * 119.99800 * 0.02562 * 14 13 11 16 16 N 1.34769 * 119.99982 * 179.97438 * 14 13 11 17 17 C 1.37098 * 120.00319 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99621 * 0.02562 * 17 16 14 19 19 C 1.38951 * 120.00336 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99836 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00032 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47354 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47011 * 120.00014 * 21 19 17 24 24 H 1.48503 * 109.47203 * 239.99951 * 21 19 17 25 25 C 1.47417 * 125.64916 * 185.04378 * 6 4 2 26 26 C 1.53002 * 109.47355 * 120.00120 * 2 1 3 27 27 C 1.53786 * 113.61640 * 277.50016 * 26 2 1 28 28 C 1.53778 * 87.07970 * 220.01316 * 27 26 2 29 29 C 1.53776 * 113.61834 * 180.02562 * 26 2 1 30 30 H 1.09001 * 109.46656 * 175.01529 * 1 2 3 31 31 H 1.08998 * 109.47008 * 55.01985 * 1 2 3 32 32 H 1.09000 * 109.47329 * 295.01578 * 1 2 3 33 33 H 1.08993 * 109.88706 * 300.51158 * 7 6 4 34 34 H 1.09000 * 109.88468 * 61.68190 * 7 6 4 35 35 H 1.08992 * 110.92936 * 264.11497 * 8 7 6 36 36 H 1.09005 * 110.74215 * 140.85256 * 8 7 6 37 37 H 1.08998 * 109.47585 * 59.99746 * 12 11 9 38 38 H 1.09004 * 109.47437 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.47354 * 299.99653 * 12 11 9 40 40 H 1.08993 * 109.47246 * 290.00434 * 13 11 9 41 41 H 1.08997 * 109.46503 * 50.00709 * 13 11 9 42 42 H 0.97000 * 120.00166 * 0.02562 * 16 14 13 43 43 H 0.96997 * 119.99843 * 180.02562 * 20 19 17 44 44 H 1.09007 * 110.36451 * 274.67076 * 25 6 4 45 45 H 1.09002 * 110.36642 * 36.88468 * 25 6 4 46 46 H 1.09001 * 112.84694 * 48.80044 * 26 2 1 47 47 H 1.09007 * 113.61027 * 334.56662 * 27 26 2 48 48 H 1.09006 * 113.61296 * 105.46311 * 27 26 2 49 49 H 1.08992 * 113.61438 * 270.87563 * 28 27 26 50 50 H 1.09009 * 113.61072 * 139.98058 * 28 27 26 51 51 H 1.09008 * 113.61198 * 254.53195 * 29 26 2 52 52 H 1.08993 * 113.61646 * 25.34720 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1487 -1.9176 -1.2287 6 7 2.3524 -0.0042 -2.3329 7 6 2.3533 1.4621 -2.4408 8 6 2.7597 1.8149 -3.8871 9 6 2.4070 0.5225 -4.6700 10 1 1.3480 0.4971 -4.9265 11 7 3.2405 0.3913 -5.8724 12 6 3.1104 -0.9490 -6.4595 13 6 2.9119 1.4313 -6.8567 14 6 3.9391 1.4217 -7.9594 15 8 4.8544 0.6265 -7.9287 16 7 3.8400 2.2960 -8.9802 17 6 4.7741 2.2870 -9.9837 18 1 5.5892 1.5789 -9.9564 19 6 4.6722 3.1888 -11.0359 20 7 3.6807 4.0506 -11.0689 21 14 5.9453 3.1769 -12.4028 22 1 6.9519 2.1190 -12.1326 23 1 5.2763 2.9032 -13.7000 24 1 6.6196 4.4987 -12.4627 25 6 2.7533 -0.5741 -3.6320 26 6 2.0400 -0.7213 1.2492 27 6 2.0720 0.1675 2.5039 28 6 3.4107 -0.5054 2.8503 29 6 3.5738 -0.7763 1.3458 30 1 -0.3633 -1.0238 -0.0893 31 1 -0.3633 0.5891 -0.8420 32 1 -0.3634 0.4346 0.9312 33 1 1.3571 1.8500 -2.2286 34 1 3.0747 1.8848 -1.7416 35 1 3.8271 2.0254 -3.9512 36 1 2.1784 2.6600 -4.2562 37 1 2.0706 -1.1261 -6.7340 38 1 3.7374 -1.0187 -7.3484 39 1 3.4265 -1.6966 -5.7320 40 1 1.9256 1.2350 -7.2770 41 1 2.9117 2.4060 -6.3689 42 1 3.1077 2.9317 -9.0050 43 1 3.6093 4.6799 -11.8037 44 1 3.8235 -0.7810 -3.6415 45 1 2.1898 -1.4844 -3.8370 46 1 1.5573 -1.6856 1.4079 47 1 2.1621 1.2312 2.2832 48 1 1.2758 -0.0524 3.2151 49 1 3.3026 -1.4103 3.4481 50 1 4.1540 0.1829 3.2530 51 1 3.9904 -1.7584 1.1218 52 1 4.0743 0.0285 0.8076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190870091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:14 Heat of formation + Delta-G solvation = -46.494291 kcal Electronic energy + Delta-G solvation = -29679.315702 eV Core-core repulsion = 25679.367440 eV Total energy + Delta-G solvation = -3999.948262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.71009 -39.31222 -38.42705 -37.49797 -35.46696 -33.85707 -33.26028 -31.26740 -30.86112 -29.25014 -27.50747 -26.44026 -25.70122 -25.46055 -24.29106 -23.00316 -22.29955 -20.29269 -19.84307 -19.25459 -19.00096 -17.86802 -17.46214 -16.71807 -16.12621 -15.94133 -15.52518 -15.09835 -14.86272 -14.73263 -14.52493 -14.19065 -13.90748 -13.61503 -13.56643 -13.25060 -13.18344 -12.96634 -12.86482 -12.75346 -12.48345 -12.36382 -12.21332 -12.06452 -11.91628 -11.59138 -11.50751 -11.44466 -11.16193 -11.02792 -10.95850 -10.85342 -10.79382 -10.64643 -10.42166 -10.35204 -10.23800 -9.78409 -9.50124 -8.79879 -8.48425 -8.00703 -7.90732 -6.43390 -3.84029 2.48800 2.74123 3.15201 3.26067 3.33245 3.88445 3.92619 4.03417 4.21559 4.24871 4.32247 4.40178 4.50427 4.54606 4.71726 4.82167 4.85212 4.98950 5.00016 5.04711 5.13932 5.17837 5.26717 5.34495 5.38164 5.39698 5.41596 5.45976 5.57327 5.59252 5.60871 5.64651 5.70256 5.74609 5.78596 5.80941 5.86916 5.88668 5.93515 5.95123 6.06757 6.13744 6.19973 6.26639 6.53680 7.18121 7.33120 7.36841 7.54184 8.02848 8.05151 8.60146 9.16908 9.52832 10.04587 10.74409 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028621 B = 0.001891 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.060374 B =14800.090402 C =14866.769667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.536 3.464 5 O -0.539 6.539 6 N -0.619 5.619 7 C 0.103 3.897 8 C -0.126 4.126 9 C 0.069 3.931 10 H 0.055 0.945 11 N -0.507 5.507 12 C 0.019 3.981 13 C 0.046 3.954 14 C 0.444 3.556 15 O -0.576 6.576 16 N -0.564 5.564 17 C -0.297 4.297 18 H 0.104 0.896 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.116 3.884 26 C -0.092 4.092 27 C -0.135 4.135 28 C -0.142 4.142 29 C -0.137 4.137 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.015 0.985 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.069 0.931 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 -2.814 24.425 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.107 0.893 4 C 0.324 3.676 5 O -0.415 6.415 6 N -0.354 5.354 7 C -0.021 4.021 8 C -0.164 4.164 9 C -0.041 4.041 10 H 0.072 0.928 11 N -0.231 5.231 12 C -0.129 4.129 13 C -0.085 4.085 14 C 0.230 3.770 15 O -0.460 6.460 16 N -0.201 5.201 17 C -0.427 4.427 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.006 4.006 26 C -0.110 4.110 27 C -0.172 4.172 28 C -0.179 4.179 29 C -0.175 4.175 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.034 0.966 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.325 -3.844 24.507 25.866 hybrid contribution -0.765 0.554 -1.132 1.474 sum -8.089 -3.290 23.375 24.953 Atomic orbital electron populations 1.21672 0.92479 1.02915 1.02537 1.21328 0.97749 1.00128 0.92594 0.89304 1.20317 0.76827 0.87251 0.83163 1.90694 1.53672 1.14241 1.82909 1.48509 1.67820 1.07444 1.11584 1.22070 1.01300 0.80425 0.98269 1.22739 1.03855 0.97454 0.92395 1.22787 0.95337 0.95084 0.90895 0.92765 1.61632 1.52780 1.03711 1.04957 1.22586 0.99488 0.88843 1.01946 1.21872 0.97165 0.96031 0.93464 1.19699 0.88314 0.84867 0.84161 1.90493 1.35877 1.41167 1.78500 1.41867 1.26458 1.31780 1.20013 1.19749 1.06280 1.17384 0.99295 0.87840 1.25261 0.97876 0.95837 0.99026 1.69619 1.30967 1.20540 1.33218 0.85803 0.80206 0.78210 0.80153 1.19213 1.20800 1.20760 1.22197 1.01275 0.96155 0.81019 1.22434 0.96599 0.99432 0.92563 1.22982 0.97895 0.99178 0.97159 1.22787 0.97638 1.00829 0.96684 1.22913 0.95899 1.02396 0.96282 0.91861 0.92251 0.91227 0.91350 0.91150 0.88871 0.89861 0.96623 0.88302 0.91923 0.93414 0.89291 0.77524 0.91943 0.90103 0.90691 0.88424 0.90035 0.91391 0.90194 0.91441 0.91189 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.17 37.16 0.34 -0.64 16 2 C -0.10 -0.81 2.18 -91.77 -0.20 -1.01 16 3 H 0.09 0.61 6.79 -51.93 -0.35 0.26 16 4 C 0.54 6.39 6.33 -10.98 -0.07 6.32 16 5 O -0.54 -8.45 16.71 5.55 0.09 -8.35 16 6 N -0.62 -6.94 3.33 -170.52 -0.57 -7.51 16 7 C 0.10 0.87 5.95 -3.07 -0.02 0.86 16 8 C -0.13 -1.27 5.62 -24.90 -0.14 -1.41 16 9 C 0.07 0.85 2.71 -65.56 -0.18 0.67 16 10 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 11 N -0.51 -8.07 4.40 -233.74 -1.03 -9.09 16 12 C 0.02 0.31 8.93 60.06 0.54 0.84 16 13 C 0.05 0.78 5.36 -4.97 -0.03 0.76 16 14 C 0.44 10.18 7.47 -10.99 -0.08 10.10 16 15 O -0.58 -15.17 13.91 5.55 0.08 -15.09 16 16 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 17 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 18 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 21 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.12 1.47 5.05 -2.53 -0.01 1.46 16 26 C -0.09 -0.75 2.66 -89.81 -0.24 -0.99 16 27 C -0.13 -0.84 7.63 -25.92 -0.20 -1.04 16 28 C -0.14 -0.96 8.08 -25.94 -0.21 -1.17 16 29 C -0.14 -1.20 7.06 -25.94 -0.18 -1.38 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.51 7.99 -51.93 -0.42 0.10 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 39 H 0.06 0.91 6.96 -51.93 -0.36 0.55 16 40 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.09 1.34 7.01 -51.93 -0.36 0.97 16 42 H 0.39 9.26 7.90 -40.82 -0.32 8.93 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.08 1.14 8.11 -51.92 -0.42 0.72 16 45 H 0.07 1.00 7.98 -51.93 -0.41 0.59 16 46 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 0.45 7.96 -51.93 -0.41 0.03 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 51 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 52 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 410.76 15.07 6.19 6.19 Total: -1.00 -32.22 410.76 -9.72 -41.93 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -9.20 Total: 8.08 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.92 Total: 5.52 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.93 Total: -54.11 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.17 Total: -23.45 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.22 -9.72 -41.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190870091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.562 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds