Wall clock time and date at job start Tue Mar 31 2020 20:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47725 * 2 1 4 4 C 1.50709 * 109.46979 * 239.99775 * 2 1 3 5 5 O 1.21282 * 120.00103 * 248.83948 * 4 2 1 6 6 N 1.34776 * 119.99903 * 68.84325 * 4 2 1 7 7 C 1.47021 * 125.64758 * 4.25522 * 6 4 2 8 8 C 1.54328 * 107.27126 * 178.91593 * 7 6 4 9 9 C 1.55156 * 102.94041 * 337.80670 * 8 7 6 10 10 H 1.08995 * 111.00497 * 277.38928 * 9 8 7 11 11 N 1.46900 * 111.00327 * 153.57250 * 9 8 7 12 12 C 1.46907 * 110.99658 * 60.87121 * 11 9 8 13 13 C 1.46897 * 111.00128 * 184.82633 * 11 9 8 14 14 C 1.50700 * 109.47295 * 170.00286 * 13 11 9 15 15 O 1.21293 * 119.99793 * 359.97438 * 14 13 11 16 16 N 1.34774 * 120.00400 * 179.97438 * 14 13 11 17 17 C 1.37091 * 120.00118 * 180.27401 * 16 14 13 18 18 H 1.08000 * 120.00109 * 359.72431 * 17 16 14 19 19 C 1.38959 * 119.99907 * 179.72729 * 17 16 14 20 20 N 1.31413 * 119.99908 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99894 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47324 * 90.00254 * 21 19 17 23 23 H 1.48502 * 109.47201 * 209.99982 * 21 19 17 24 24 H 1.48501 * 109.47132 * 330.00149 * 21 19 17 25 25 C 1.47420 * 125.64924 * 184.22369 * 6 4 2 26 26 C 1.53001 * 109.47359 * 120.00034 * 2 1 3 27 27 C 1.53778 * 113.61316 * 279.13578 * 26 2 1 28 28 C 1.53953 * 87.01992 * 220.04541 * 27 26 2 29 29 C 1.53781 * 113.61640 * 181.52731 * 26 2 1 30 30 H 1.09001 * 109.46676 * 306.20403 * 1 2 3 31 31 H 1.08999 * 109.46972 * 66.20212 * 1 2 3 32 32 H 1.09004 * 109.47216 * 186.20474 * 1 2 3 33 33 H 1.09003 * 109.88573 * 59.50123 * 7 6 4 34 34 H 1.08996 * 110.01163 * 298.40650 * 7 6 4 35 35 H 1.08998 * 110.71984 * 219.44367 * 8 7 6 36 36 H 1.09001 * 110.86469 * 96.23956 * 8 7 6 37 37 H 1.09004 * 109.46550 * 189.00254 * 12 11 9 38 38 H 1.08997 * 109.46859 * 308.99991 * 12 11 9 39 39 H 1.08996 * 109.46950 * 69.00399 * 12 11 9 40 40 H 1.08999 * 109.47253 * 50.00031 * 13 11 9 41 41 H 1.08999 * 109.46912 * 290.00002 * 13 11 9 42 42 H 0.97001 * 119.99424 * 0.02562 * 16 14 13 43 43 H 0.97000 * 119.99753 * 179.97438 * 20 19 17 44 44 H 1.08998 * 110.36216 * 85.31330 * 25 6 4 45 45 H 1.09001 * 110.36983 * 322.99163 * 25 6 4 46 46 H 1.09006 * 112.84843 * 50.32855 * 26 2 1 47 47 H 1.08994 * 113.61588 * 334.56768 * 27 26 2 48 48 H 1.09001 * 113.61364 * 105.46615 * 27 26 2 49 49 H 1.09001 * 113.53859 * 270.81423 * 28 27 26 50 50 H 1.08995 * 113.74221 * 139.94378 * 28 27 26 51 51 H 1.09004 * 113.61248 * 254.52719 * 29 26 2 52 52 H 1.08999 * 113.61471 * 25.43129 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.5919 -1.7815 -1.1264 6 7 1.8597 -0.1557 -2.4466 7 6 1.2813 1.1702 -2.7093 8 6 1.3100 1.3882 -4.2368 9 6 2.4203 0.4113 -4.7064 10 1 3.4083 0.8549 -4.5841 11 7 2.2015 -0.0046 -6.0982 12 6 2.2287 1.1520 -7.0036 13 6 3.1855 -1.0160 -6.5063 14 6 2.7874 -1.5950 -7.8395 15 8 1.7825 -1.2039 -8.3948 16 7 3.5479 -2.5474 -8.4148 17 6 3.1888 -3.0701 -9.6302 18 1 2.2940 -2.7218 -10.1246 19 6 3.9760 -4.0480 -10.2259 20 7 3.6320 -4.5486 -11.3913 21 14 5.5239 -4.6498 -9.3710 22 1 5.1902 -5.8029 -8.4968 23 1 6.5192 -5.0723 -10.3890 24 1 6.0931 -3.5528 -8.5477 25 6 2.2202 -0.7776 -3.7337 26 6 2.0400 -0.7213 1.2492 27 6 2.0345 0.1559 2.5123 28 6 3.3856 -0.4900 2.8693 29 6 3.5734 -0.7444 1.3644 30 1 -0.3633 0.6070 0.8293 31 1 -0.3633 0.4147 -0.9403 32 1 -0.3634 -1.0217 0.1111 33 1 1.8752 1.9385 -2.2140 34 1 0.2533 1.2067 -2.3488 35 1 1.5766 2.4180 -4.4745 36 1 0.3513 1.1263 -4.6844 37 1 1.9078 0.8422 -7.9983 38 1 1.5559 1.9230 -6.6284 39 1 3.2427 1.5485 -7.0561 40 1 3.2203 -1.8106 -5.7609 41 1 4.1688 -0.5532 -6.5902 42 1 4.3514 -2.8605 -7.9704 43 1 4.1817 -5.2310 -11.8073 44 1 1.4133 -1.4218 -4.0828 45 1 3.1449 -1.3462 -3.6345 46 1 1.5765 -1.6973 1.3934 47 1 2.1025 1.2233 2.3030 48 1 1.2342 -0.0893 3.2106 49 1 3.2900 -1.4025 3.4577 50 1 4.1094 0.2094 3.2875 51 1 4.0137 -1.7153 1.1372 52 1 4.0630 0.0766 0.8405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190870092.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:19 Heat of formation + Delta-G solvation = -36.242782 kcal Electronic energy + Delta-G solvation = -29893.976280 eV Core-core repulsion = 25894.472557 eV Total energy + Delta-G solvation = -3999.503723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74846 -39.36851 -38.49954 -37.53008 -35.56508 -33.90125 -33.34801 -31.67573 -30.90190 -29.05094 -28.04604 -26.40729 -25.67886 -25.04434 -24.50569 -23.04949 -22.23327 -20.31586 -19.86321 -19.38754 -19.16711 -18.23495 -17.38956 -16.90764 -16.03087 -15.82961 -15.37055 -15.29325 -15.00487 -14.88666 -14.55017 -14.43083 -14.09978 -13.74650 -13.33438 -13.16474 -13.10155 -13.07990 -12.86427 -12.73780 -12.47800 -12.45111 -12.31038 -12.09862 -11.97961 -11.77536 -11.60041 -11.49262 -11.37316 -11.12040 -11.02611 -10.87977 -10.82086 -10.63367 -10.58086 -10.38948 -9.96712 -9.77028 -9.53232 -8.80293 -8.61586 -8.17661 -8.01265 -6.30252 -3.81476 2.49371 2.71857 3.04140 3.09139 3.16861 3.73742 3.84817 4.02492 4.11648 4.24410 4.32009 4.35951 4.43743 4.57421 4.64940 4.73361 4.81318 4.86215 4.99272 5.00591 5.04677 5.12238 5.22105 5.24866 5.37142 5.39665 5.42876 5.46159 5.48905 5.57352 5.59070 5.60914 5.62501 5.71926 5.76015 5.79093 5.81638 5.83957 5.89711 5.92216 5.98126 6.01273 6.10217 6.21851 6.47267 7.07261 7.22628 7.35383 7.59138 8.02542 8.15299 8.60987 8.96105 9.43437 9.84103 10.82770 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015959 B = 0.002339 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.052282 B =11966.323771 C =13193.391680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.092 0.908 4 C 0.533 3.467 5 O -0.534 6.534 6 N -0.619 5.619 7 C 0.100 3.900 8 C -0.123 4.123 9 C 0.068 3.932 10 H 0.054 0.946 11 N -0.506 5.506 12 C 0.022 3.978 13 C 0.039 3.961 14 C 0.454 3.546 15 O -0.559 6.559 16 N -0.591 5.591 17 C -0.304 4.304 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.112 3.888 26 C -0.089 4.089 27 C -0.135 4.135 28 C -0.145 4.145 29 C -0.129 4.129 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.065 0.935 51 H 0.072 0.928 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 14.402 27.073 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.110 0.890 4 C 0.321 3.679 5 O -0.410 6.410 6 N -0.354 5.354 7 C -0.023 4.023 8 C -0.161 4.161 9 C -0.042 4.042 10 H 0.072 0.928 11 N -0.231 5.231 12 C -0.126 4.126 13 C -0.092 4.092 14 C 0.240 3.760 15 O -0.441 6.441 16 N -0.230 5.230 17 C -0.432 4.432 18 H 0.138 0.862 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.705 3.295 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.011 4.011 26 C -0.107 4.107 27 C -0.173 4.173 28 C -0.182 4.182 29 C -0.166 4.166 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.108 0.892 41 H 0.068 0.932 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.113 0.887 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.610 13.683 26.609 30.035 hybrid contribution 2.157 -0.189 0.462 2.214 sum -0.453 13.494 27.071 30.252 Atomic orbital electron populations 1.21811 0.92735 1.03059 1.02710 1.21321 0.97632 1.00196 0.92577 0.88976 1.20350 0.78805 0.85623 0.83093 1.90709 1.42276 1.22146 1.85839 1.48443 1.62455 1.18644 1.05823 1.22148 0.98781 0.84518 0.96851 1.22712 1.00700 0.99575 0.93161 1.22782 0.97410 0.94839 0.89123 0.92785 1.61622 1.49308 1.12155 0.99988 1.22573 0.98970 0.91473 0.99560 1.21977 0.93542 0.95936 0.97752 1.19569 0.86054 0.83353 0.87062 1.90518 1.26619 1.62018 1.64961 1.42210 1.24036 1.36385 1.20387 1.19417 1.11224 1.18542 0.94053 0.86242 1.25038 0.98260 0.96880 0.95990 1.69622 1.38945 1.28122 1.15435 0.86685 0.83313 0.79648 0.79832 1.19543 1.20198 1.19539 1.22254 1.01835 0.95431 0.81587 1.22373 0.96858 0.99204 0.92290 1.23003 0.97853 0.99219 0.97205 1.22860 0.97448 1.00873 0.97035 1.22837 0.95840 1.02447 0.95520 0.91346 0.91744 0.91927 0.91513 0.90774 0.90056 0.88915 0.88225 0.91918 0.96475 0.89204 0.93209 0.79722 0.91627 0.89894 0.90473 0.88692 0.90188 0.91442 0.90259 0.91604 0.90900 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.09 37.16 0.34 -0.63 16 2 C -0.10 -0.77 1.85 -91.77 -0.17 -0.94 16 3 H 0.09 0.60 7.81 -51.93 -0.41 0.20 16 4 C 0.53 6.25 6.83 -10.98 -0.08 6.17 16 5 O -0.53 -8.31 15.56 5.56 0.09 -8.23 16 6 N -0.62 -6.68 3.33 -170.52 -0.57 -7.25 16 7 C 0.10 0.77 6.12 -3.06 -0.02 0.75 16 8 C -0.12 -1.08 5.28 -24.89 -0.13 -1.22 16 9 C 0.07 0.79 2.71 -65.57 -0.18 0.61 16 10 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 11 N -0.51 -7.66 4.40 -233.75 -1.03 -8.69 16 12 C 0.02 0.32 9.08 60.07 0.55 0.86 16 13 C 0.04 0.66 5.33 -4.98 -0.03 0.63 16 14 C 0.45 10.22 7.54 -10.99 -0.08 10.14 16 15 O -0.56 -14.61 13.88 5.55 0.08 -14.53 16 16 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 17 C -0.30 -8.59 10.16 -14.93 -0.15 -8.74 16 18 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 19 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 20 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 21 Si 0.88 19.62 27.74 -169.99 -4.71 14.91 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 25 C 0.11 1.40 5.41 -2.53 -0.01 1.39 16 26 C -0.09 -0.73 2.61 -89.81 -0.23 -0.97 16 27 C -0.14 -0.85 7.63 -25.83 -0.20 -1.04 16 28 C -0.14 -1.00 8.09 -25.83 -0.21 -1.21 16 29 C -0.13 -1.15 6.48 -25.92 -0.17 -1.32 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.41 5.52 -51.93 -0.29 0.12 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.07 0.47 5.89 -51.93 -0.31 0.16 16 35 H 0.08 0.58 7.90 -51.93 -0.41 0.17 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.83 5.99 -51.93 -0.31 1.52 16 38 H 0.06 0.74 6.75 -51.93 -0.35 0.39 16 39 H 0.02 0.23 8.08 -51.93 -0.42 -0.19 16 40 H 0.09 1.37 6.74 -51.93 -0.35 1.02 16 41 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 42 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.08 1.04 7.64 -51.93 -0.40 0.64 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.08 0.43 7.99 -51.93 -0.41 0.02 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 52 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 401.83 15.07 6.06 6.06 Total: -1.00 -33.74 401.83 -9.17 -42.91 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -8.93 Total: 8.54 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.87 Total: 5.52 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.88 Total: -55.18 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.16 Total: -22.76 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.74 -9.17 -42.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190870092.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.666 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds