Wall clock time and date at job start Tue Mar 31 2020 20:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46930 * 2 1 4 4 C 1.50697 * 109.47260 * 120.00057 * 2 1 3 5 5 O 1.21283 * 119.99461 * 85.01692 * 4 2 1 6 6 N 1.34777 * 120.00294 * 265.29752 * 4 2 1 7 7 C 1.47018 * 125.64614 * 4.95961 * 6 4 2 8 8 C 1.54320 * 107.27318 * 178.90693 * 7 6 4 9 9 C 1.55160 * 102.94023 * 337.80965 * 8 7 6 10 10 H 1.09002 * 110.99991 * 277.38917 * 9 8 7 11 11 N 1.46894 * 111.00707 * 153.57668 * 9 8 7 12 12 C 1.46903 * 111.00098 * 185.40495 * 11 9 8 13 13 C 1.46900 * 111.00099 * 61.45178 * 11 9 8 14 14 C 1.50700 * 109.47375 * 190.00313 * 13 11 9 15 15 O 1.21295 * 119.99728 * 359.97438 * 14 13 11 16 16 N 1.34772 * 120.00323 * 179.97438 * 14 13 11 17 17 C 1.37100 * 120.00265 * 179.97438 * 16 14 13 18 18 H 1.08006 * 120.00025 * 0.02562 * 17 16 14 19 19 C 1.38951 * 120.00207 * 179.97438 * 17 16 14 20 20 N 1.31410 * 120.00044 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00052 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47288 * 90.00260 * 21 19 17 23 23 H 1.48506 * 109.47151 * 210.00339 * 21 19 17 24 24 H 1.48502 * 109.46891 * 330.00158 * 21 19 17 25 25 C 1.47420 * 125.64893 * 184.65736 * 6 4 2 26 26 C 1.52997 * 109.47300 * 240.00324 * 2 1 3 27 27 C 1.53780 * 113.61918 * 159.13677 * 26 2 1 28 28 C 1.53956 * 87.02104 * 220.05006 * 27 26 2 29 29 C 1.53772 * 87.11171 * 25.35977 * 28 27 26 30 30 H 1.08994 * 109.47010 * 184.97289 * 1 2 3 31 31 H 1.08997 * 109.47206 * 304.97417 * 1 2 3 32 32 H 1.09001 * 109.46866 * 64.97350 * 1 2 3 33 33 H 1.09005 * 109.88458 * 298.32269 * 7 6 4 34 34 H 1.08996 * 109.88735 * 59.33057 * 7 6 4 35 35 H 1.08999 * 110.71954 * 96.16638 * 8 7 6 36 36 H 1.08996 * 110.72443 * 219.44194 * 8 7 6 37 37 H 1.08995 * 109.46868 * 60.00157 * 12 11 9 38 38 H 1.08998 * 109.47042 * 179.97438 * 12 11 9 39 39 H 1.08999 * 109.46940 * 299.99540 * 12 11 9 40 40 H 1.09001 * 109.47141 * 310.00064 * 13 11 9 41 41 H 1.08995 * 109.47543 * 70.00236 * 13 11 9 42 42 H 0.96998 * 120.00264 * 359.97438 * 16 14 13 43 43 H 0.96998 * 120.00131 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.36607 * 322.99508 * 25 6 4 45 45 H 1.09000 * 110.37167 * 85.31960 * 25 6 4 46 46 H 1.09004 * 112.84851 * 290.33547 * 26 2 1 47 47 H 1.09000 * 113.61077 * 334.56537 * 27 26 2 48 48 H 1.08994 * 113.61491 * 105.46799 * 27 26 2 49 49 H 1.09003 * 113.53534 * 270.80680 * 28 27 26 50 50 H 1.09001 * 113.74398 * 139.94795 * 28 27 26 51 51 H 1.08999 * 113.61467 * 220.09158 * 29 28 27 52 52 H 1.08999 * 113.61555 * 89.19062 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.1484 -1.9177 1.2286 6 7 2.3472 -0.0048 2.3347 7 6 2.1527 1.4417 2.5116 8 6 2.6298 1.7975 3.9354 9 6 2.5394 0.4400 4.6815 10 1 1.5227 0.2506 5.0260 11 7 3.4895 0.3900 5.8007 12 6 3.4956 -0.9388 6.4270 13 6 3.1946 1.4363 6.7887 14 6 4.3205 1.5159 7.7873 15 8 5.2744 0.7736 7.6861 16 7 4.2674 2.4118 8.7928 17 6 5.2914 2.4838 9.7015 18 1 6.1409 1.8229 9.6114 19 6 5.2370 3.4078 10.7378 20 7 4.2037 4.2123 10.8472 21 14 6.6326 3.5065 11.9756 22 1 7.6511 4.4754 11.4971 23 1 6.1001 3.9552 13.2873 24 1 7.2559 2.1671 12.1264 25 6 2.9379 -0.5566 3.5675 26 6 2.0400 -0.7212 -1.2492 27 6 3.4867 -0.3576 -1.6231 28 6 3.0233 -0.3617 -3.0912 29 6 1.6121 -0.0508 -2.5655 30 1 -0.3633 -1.0237 0.0891 31 1 -0.3633 0.5890 0.8421 32 1 -0.3633 0.4348 -0.9312 33 1 2.7429 1.9879 1.7756 34 1 1.0976 1.6905 2.3986 35 1 3.6574 2.1604 3.9184 36 1 1.9674 2.5331 4.3915 37 1 3.7852 -1.6869 5.6890 38 1 4.2078 -0.9483 7.2521 39 1 2.4989 -1.1673 6.8043 40 1 3.0901 2.3956 6.2819 41 1 2.2661 1.1959 7.3065 42 1 3.5047 3.0056 8.8735 43 1 4.1658 4.8576 11.5704 44 1 2.5262 -1.5441 3.7764 45 1 4.0230 -0.6082 3.4783 46 1 1.8520 -1.7946 -1.2247 47 1 3.7962 0.6246 -1.2658 48 1 4.2080 -1.1407 -1.3896 49 1 3.1055 -1.3371 -3.5708 50 1 3.4533 0.4416 -3.6895 51 1 0.8222 -0.5867 -3.0917 52 1 1.4082 1.0153 -2.4663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190870093.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:24 Heat of formation + Delta-G solvation = -47.221224 kcal Electronic energy + Delta-G solvation = -29628.828047 eV Core-core repulsion = 25628.848263 eV Total energy + Delta-G solvation = -3999.979784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.69251 -39.32514 -38.45391 -37.51747 -35.46937 -33.85542 -33.21373 -31.26725 -30.85608 -29.24326 -27.53490 -26.59277 -25.59077 -25.42744 -24.28597 -23.02431 -22.31116 -20.31989 -19.80196 -19.28050 -19.00484 -17.85906 -17.45034 -16.74199 -16.10725 -15.90972 -15.48558 -15.15744 -14.84497 -14.71701 -14.52411 -14.21678 -13.93414 -13.61514 -13.57549 -13.33510 -13.21976 -12.95032 -12.87729 -12.77894 -12.52092 -12.32337 -12.19221 -11.98368 -11.90566 -11.57370 -11.50683 -11.43528 -11.16224 -11.01674 -10.94181 -10.82147 -10.80600 -10.64423 -10.45819 -10.40384 -10.23046 -9.80945 -9.48948 -8.79598 -8.48596 -8.00595 -7.90659 -6.43178 -3.83875 2.48376 2.74453 3.16876 3.25729 3.31457 3.88573 3.92657 4.04857 4.21042 4.23046 4.32448 4.40235 4.50180 4.52755 4.68513 4.83292 4.84047 4.99791 5.03362 5.06090 5.15327 5.18092 5.27140 5.34718 5.37151 5.38317 5.39731 5.46753 5.58088 5.59438 5.61707 5.65602 5.70000 5.70600 5.78465 5.80935 5.86726 5.88933 5.93107 5.95025 6.06046 6.13344 6.21566 6.26559 6.53826 7.18231 7.33213 7.36793 7.54060 8.02196 8.05013 8.60307 9.16924 9.52890 10.04734 10.74525 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027578 B = 0.001886 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.061736 B =14846.423142 C =14907.195203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.089 0.911 4 C 0.536 3.464 5 O -0.541 6.541 6 N -0.618 5.618 7 C 0.103 3.897 8 C -0.128 4.128 9 C 0.069 3.931 10 H 0.054 0.946 11 N -0.507 5.507 12 C 0.020 3.980 13 C 0.046 3.954 14 C 0.444 3.556 15 O -0.577 6.577 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.116 3.884 26 C -0.095 4.095 27 C -0.140 4.140 28 C -0.142 4.142 29 C -0.134 4.134 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.015 0.985 40 H 0.090 0.910 41 H 0.048 0.952 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.101 0.899 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.068 0.932 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.110 -3.372 -23.570 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.107 0.893 4 C 0.325 3.675 5 O -0.418 6.418 6 N -0.353 5.353 7 C -0.020 4.020 8 C -0.166 4.166 9 C -0.041 4.041 10 H 0.072 0.928 11 N -0.231 5.231 12 C -0.128 4.128 13 C -0.086 4.086 14 C 0.229 3.771 15 O -0.461 6.461 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.007 4.007 26 C -0.114 4.114 27 C -0.177 4.177 28 C -0.179 4.179 29 C -0.171 4.171 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.034 0.966 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.120 0.880 47 H 0.098 0.902 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.986 -4.337 -23.741 25.753 hybrid contribution -0.658 0.527 1.182 1.452 sum -9.643 -3.809 -22.559 24.828 Atomic orbital electron populations 1.21678 0.92480 1.02943 1.02546 1.21300 0.97736 1.00140 0.92575 0.89289 1.20321 0.76844 0.87177 0.83196 1.90688 1.53868 1.14098 1.83122 1.48492 1.62762 1.09206 1.14820 1.22066 1.00894 0.81018 0.98068 1.22761 1.03695 0.97124 0.92992 1.22736 0.94456 0.95247 0.91644 0.92833 1.61607 1.48054 1.04536 1.08900 1.22578 1.00385 0.88886 1.00942 1.21875 0.97045 0.95982 0.93668 1.19703 0.88859 0.84612 0.83899 1.90493 1.35365 1.44534 1.75671 1.41859 1.21342 1.32722 1.24160 1.19697 1.00306 1.18299 1.04474 0.87902 1.25257 0.98127 0.95969 0.98606 1.69608 1.29548 1.21834 1.33351 0.85861 0.80432 0.78783 0.79236 1.20404 1.20962 1.19433 1.22143 0.99200 0.97037 0.82309 1.22491 0.96244 1.00750 0.91890 1.23012 0.96531 1.01921 0.96265 1.22811 0.96737 1.01917 0.96438 1.22938 0.97172 1.00827 0.96179 0.91858 0.92278 0.91169 0.91113 0.91356 0.88864 0.89797 0.91981 0.88293 0.96603 0.89231 0.93428 0.77522 0.91891 0.90582 0.90043 0.88044 0.90184 0.91346 0.90215 0.91421 0.91368 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.07 37.16 0.34 -0.64 16 2 C -0.10 -0.81 2.08 -91.77 -0.19 -1.00 16 3 H 0.09 0.62 6.81 -51.93 -0.35 0.27 16 4 C 0.54 6.46 6.82 -10.99 -0.07 6.38 16 5 O -0.54 -8.57 16.41 5.56 0.09 -8.48 16 6 N -0.62 -6.99 3.33 -170.67 -0.57 -7.56 16 7 C 0.10 0.88 6.15 -3.07 -0.02 0.86 16 8 C -0.13 -1.29 5.32 -24.90 -0.13 -1.42 16 9 C 0.07 0.86 2.70 -65.68 -0.18 0.68 16 10 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 11 N -0.51 -8.08 4.40 -233.89 -1.03 -9.11 16 12 C 0.02 0.32 9.01 60.07 0.54 0.86 16 13 C 0.05 0.78 5.32 -4.98 -0.03 0.75 16 14 C 0.44 10.17 7.48 -10.99 -0.08 10.09 16 15 O -0.58 -15.17 13.91 5.54 0.08 -15.10 16 16 N -0.56 -13.96 5.29 -10.96 -0.06 -14.01 16 17 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 18 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 21 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.12 1.48 5.39 -2.65 -0.01 1.47 16 26 C -0.10 -0.79 2.86 -89.81 -0.26 -1.05 16 27 C -0.14 -1.14 7.62 -25.83 -0.20 -1.33 16 28 C -0.14 -0.93 8.09 -25.83 -0.21 -1.14 16 29 C -0.13 -0.83 6.66 -25.92 -0.17 -1.00 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.38 7.33 -51.93 -0.38 0.00 16 33 H 0.07 0.51 7.73 -51.93 -0.40 0.11 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 37 H 0.06 0.90 7.16 -51.93 -0.37 0.53 16 38 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 1.34 6.73 -51.93 -0.35 0.99 16 41 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.08 1.04 7.87 -51.93 -0.41 0.63 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.10 1.03 7.69 -51.93 -0.40 0.63 16 47 H 0.08 0.61 7.99 -51.93 -0.41 0.20 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 LS Contribution 409.14 15.07 6.17 6.17 Total: -1.00 -32.22 409.14 -9.65 -41.87 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -9.12 Total: 8.18 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.91 Total: 5.66 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.93 Total: -54.13 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.17 Total: -23.57 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.22 -9.65 -41.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190870093.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.350 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds